Wall clock time and date at job start Sat Apr 11 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47154 * 300.00448 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00237 * 3 2 1 7 7 C 1.38810 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00365 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00092 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.46895 * 34.99445 * 10 9 7 12 12 C 1.52994 * 109.47039 * 154.99989 * 10 9 7 13 13 N 1.46498 * 109.47118 * 304.99625 * 12 10 9 14 14 C 1.34777 * 119.99822 * 179.97438 * 13 12 10 15 15 O 1.21712 * 120.00345 * 0.02562 * 14 13 12 16 16 C 1.46598 * 119.99790 * 179.97438 * 14 13 12 17 17 C 1.41160 * 126.56479 * 0.02682 * 16 14 13 18 18 N 1.30516 * 108.27477 * 179.97438 * 17 16 14 19 19 N 1.39993 * 109.37132 * 0.02562 * 18 17 16 20 20 C 1.38452 * 143.85017 * 180.02562 * 19 18 17 21 21 C 1.33077 * 108.42211 * 179.97438 * 20 19 18 22 22 N 1.38059 * 108.13262 * 0.19710 * 21 20 19 23 23 H 0.97002 * 126.15956 * 179.70036 * 22 21 20 24 24 C 1.35012 * 108.27388 * 359.97438 * 19 18 17 25 25 C 1.50703 * 109.46798 * 274.99850 * 10 9 7 26 26 C 1.38238 * 119.99924 * 319.72739 * 25 10 9 27 27 C 1.38234 * 119.99674 * 179.78836 * 26 25 10 28 28 C 1.38239 * 120.00195 * 0.44456 * 27 26 25 29 29 C 1.38236 * 119.99941 * 359.80726 * 28 27 26 30 30 C 1.38234 * 120.00005 * 140.00168 * 25 10 9 31 31 H 0.96996 * 119.99894 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99786 * 0.02562 * 9 7 2 33 33 H 1.09008 * 109.47297 * 184.99659 * 12 10 9 34 34 H 1.09001 * 109.47245 * 64.99924 * 12 10 9 35 35 H 0.96990 * 120.00199 * 0.02562 * 13 12 10 36 36 H 1.08005 * 125.86025 * 359.94527 * 17 16 14 37 37 H 1.08006 * 125.78899 * 359.95637 * 20 19 18 38 38 H 1.07997 * 125.92926 * 180.02562 * 21 20 19 39 39 H 1.07996 * 120.00275 * 359.97438 * 26 25 10 40 40 H 1.08000 * 120.00372 * 180.27370 * 27 26 25 41 41 H 1.08000 * 120.00226 * 179.83255 * 28 27 26 42 42 H 1.07994 * 120.00367 * 180.02562 * 29 28 27 43 43 H 1.08004 * 119.99719 * 359.97438 * 30 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9689 -3.5505 0.5888 12 6 1.1810 -4.7521 0.6091 13 7 0.7345 -4.3355 1.9407 14 6 -0.0554 -5.1473 2.6712 15 8 -0.3973 -6.2268 2.2248 16 6 -0.5017 -4.7306 4.0039 17 6 -0.1903 -3.5168 4.6537 18 7 -0.7731 -3.5165 5.8215 19 7 -1.4815 -4.7125 5.9873 20 6 -2.2888 -5.4220 6.8601 21 6 -2.6099 -6.5802 6.2888 22 7 -2.0089 -6.6278 5.0468 23 1 -2.0669 -7.3577 4.4105 24 6 -1.3175 -5.4594 4.8745 25 6 2.4165 -4.0299 -1.4160 26 6 1.5056 -3.8274 -2.4359 27 6 1.8360 -4.1655 -3.7349 28 6 3.0738 -4.7147 -4.0127 29 6 3.9828 -4.9220 -2.9920 30 6 3.6540 -4.5798 -1.6936 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.7559 -5.6746 0.6908 34 1 0.3134 -4.9200 -0.0291 35 1 1.0066 -3.4751 2.2963 36 1 0.4250 -2.7246 4.2534 37 1 -2.6043 -5.0916 7.8388 38 1 -3.2302 -7.3504 6.7227 39 1 0.5369 -3.4022 -2.2183 40 1 1.1260 -4.0033 -4.5324 41 1 3.3309 -4.9814 -5.0271 42 1 4.9500 -5.3506 -3.2090 43 1 4.3642 -4.7417 -0.8962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713703603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:37 Heat of formation + Delta-G solvation = 139.824322 kcal Electronic energy + Delta-G solvation = -28193.673821 eV Core-core repulsion = 24242.428944 eV Total energy + Delta-G solvation = -3951.244877 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.11817 -39.28557 -38.67400 -37.86432 -35.77117 -33.43997 -32.75569 -31.91518 -30.37910 -29.67791 -29.53056 -28.95620 -27.03738 -23.92998 -23.06317 -22.57290 -22.18954 -21.84268 -21.08435 -20.17275 -19.88708 -17.97509 -17.24049 -16.45101 -16.24598 -16.14506 -15.95596 -15.28008 -15.09272 -14.77439 -14.58053 -14.31413 -14.12587 -14.04967 -13.45545 -13.27970 -13.22339 -12.87525 -12.79542 -12.67214 -12.63606 -12.24657 -11.90963 -11.08246 -10.95317 -10.91403 -10.77998 -10.66644 -10.60459 -10.41704 -10.07426 -9.76905 -9.51345 -9.21644 -9.04338 -8.56179 -8.37368 -8.15163 -7.62873 -7.08814 -5.82683 -3.13900 1.50779 1.84685 1.89466 1.95739 1.97084 2.44936 2.71571 3.40978 3.48233 3.49481 3.74187 3.84873 4.31161 4.36481 4.54517 4.62033 4.77101 5.11966 5.21493 5.29467 5.37195 5.45575 5.47313 5.52870 5.60084 5.62129 5.66486 5.74407 5.87810 5.95538 6.08233 6.13914 6.34257 6.46434 6.51984 6.53326 6.67980 6.77923 6.92727 6.97759 7.00111 7.07427 7.32684 7.56457 7.68353 7.69644 8.12475 8.33412 8.76793 9.46700 9.97033 10.33813 11.38620 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009884 B = 0.003372 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.298788 B = 8301.122275 C =10572.756273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.005 4.005 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.197 3.803 11 H 0.066 0.934 12 C 0.126 3.874 13 N -0.710 5.710 14 C 0.601 3.399 15 O -0.581 6.581 16 C -0.329 4.329 17 C 0.134 3.866 18 N -0.302 5.302 19 N -0.310 5.310 20 C 0.003 3.997 21 C 0.023 3.977 22 N -0.575 5.575 23 H 0.443 0.557 24 C 0.318 3.682 25 C -0.080 4.080 26 C -0.084 4.084 27 C -0.128 4.128 28 C -0.135 4.135 29 C -0.130 4.130 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.387 0.613 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.409 0.591 36 H 0.205 0.795 37 H 0.191 0.809 38 H 0.203 0.797 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -14.755 8.401 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.354 5.354 10 C 0.086 3.914 11 H 0.084 0.916 12 C 0.001 3.999 13 N -0.360 5.360 14 C 0.390 3.610 15 O -0.463 6.463 16 C -0.349 4.349 17 C -0.050 4.050 18 N -0.124 5.124 19 N -0.079 5.079 20 C -0.124 4.124 21 C -0.105 4.105 22 N -0.187 5.187 23 H 0.285 0.715 24 C 0.082 3.918 25 C -0.083 4.083 26 C -0.102 4.102 27 C -0.146 4.146 28 C -0.154 4.154 29 C -0.148 4.148 30 C -0.139 4.139 31 H 0.065 0.935 32 H 0.222 0.778 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.245 0.755 36 H 0.221 0.779 37 H 0.208 0.792 38 H 0.220 0.780 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.360 -14.597 9.261 17.448 hybrid contribution 0.331 0.748 -1.065 1.342 sum -2.029 -13.849 8.197 16.220 Atomic orbital electron populations 1.69664 1.05031 1.25698 1.57035 1.24705 0.95412 0.97568 1.02479 0.86180 0.78909 0.84272 0.77171 1.20549 1.21961 1.21819 1.19231 0.91032 0.83705 1.43365 0.91047 1.42468 1.05829 0.99223 1.87923 1.19496 0.95111 0.86599 0.90179 0.91641 1.21512 0.98424 0.96952 0.83031 1.45607 1.51083 1.21792 1.17567 1.16827 0.77523 0.83572 0.83057 1.90704 1.59361 1.23240 1.73029 1.18521 1.18346 0.98690 0.99368 1.24166 0.95014 0.95833 0.89956 1.77524 1.16340 0.97663 1.20845 1.47084 1.34921 1.13527 1.12412 1.21558 1.00801 0.91311 0.98710 1.22237 1.02994 0.99665 0.85600 1.41543 1.43432 1.16379 1.17351 0.71509 1.19224 0.96195 0.85285 0.91070 1.20996 0.93514 0.95564 0.98269 1.21010 1.00064 0.97103 0.92007 1.21102 0.96740 0.99972 0.96794 1.20972 0.94567 1.01322 0.98490 1.20978 0.98999 1.01570 0.93299 1.21015 0.96696 0.99876 0.96353 0.93463 0.77799 0.91706 0.91769 0.75483 0.77852 0.79230 0.78004 0.85908 0.86910 0.87151 0.87047 0.86742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.36 13.06 55.49 0.72 -25.64 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 21.61 29.55 -169.99 -5.02 16.58 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.17 9.92 -15.06 -0.15 -6.32 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.71 -15.98 3.81 -54.55 -0.21 -16.18 16 10 C 0.20 3.63 2.64 -69.08 -0.18 3.45 16 11 H 0.07 1.19 7.94 -51.93 -0.41 0.78 16 12 C 0.13 2.16 5.21 -4.05 -0.02 2.14 16 13 N -0.71 -12.02 5.38 -61.64 -0.33 -12.35 16 14 C 0.60 10.61 7.78 -12.89 -0.10 10.51 16 15 O -0.58 -11.45 16.91 5.18 0.09 -11.36 16 16 C -0.33 -5.29 6.15 -104.83 -0.65 -5.94 16 17 C 0.13 2.03 11.48 -17.00 -0.20 1.83 16 18 N -0.30 -4.75 12.61 30.85 0.39 -4.36 16 19 N -0.31 -4.27 4.67 -11.88 -0.06 -4.32 16 20 C 0.00 0.02 11.91 -16.35 -0.19 -0.17 16 21 C 0.02 0.15 11.92 -16.54 -0.20 -0.05 16 22 N -0.57 -5.73 6.24 -11.98 -0.07 -5.81 16 23 H 0.44 3.73 8.96 -40.82 -0.37 3.37 16 24 C 0.32 4.54 8.38 -154.53 -1.29 3.25 16 25 C -0.08 -1.44 4.92 -104.62 -0.51 -1.96 16 26 C -0.08 -1.55 9.32 -39.58 -0.37 -1.92 16 27 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 28 C -0.14 -2.02 10.05 -39.58 -0.40 -2.41 16 29 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 30 C -0.12 -1.95 9.67 -39.58 -0.38 -2.33 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.39 9.43 7.80 -40.82 -0.32 9.12 16 33 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.41 6.83 7.07 -40.82 -0.29 6.54 16 36 H 0.20 2.67 7.49 -52.48 -0.39 2.28 16 37 H 0.19 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.20 0.27 8.06 -52.49 -0.42 -0.15 16 39 H 0.12 2.43 7.73 -52.49 -0.41 2.03 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 41 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.11 1.62 8.04 -52.48 -0.42 1.20 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -34.38 376.24 -9.47 -43.85 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -5.11 Total: 18.89 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -5.54 Total: -4.96 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: 0.44 Total: -68.67 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.38 -9.47 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713703603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.671 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds