Wall clock time and date at job start Sat Apr 11 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47154 * 300.00448 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00237 * 3 2 1 7 7 C 1.38810 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00365 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00092 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.46895 * 34.99445 * 10 9 7 12 12 C 1.52994 * 109.47039 * 154.99989 * 10 9 7 13 13 N 1.46498 * 109.47118 * 304.99625 * 12 10 9 14 14 C 1.34777 * 119.99822 * 179.97438 * 13 12 10 15 15 O 1.21712 * 120.00345 * 0.02562 * 14 13 12 16 16 C 1.46598 * 119.99790 * 179.97438 * 14 13 12 17 17 C 1.41160 * 126.56479 * 0.02682 * 16 14 13 18 18 N 1.30516 * 108.27477 * 179.97438 * 17 16 14 19 19 N 1.39993 * 109.37132 * 0.02562 * 18 17 16 20 20 C 1.38452 * 143.85017 * 180.02562 * 19 18 17 21 21 C 1.33077 * 108.42211 * 179.97438 * 20 19 18 22 22 N 1.38059 * 108.13262 * 0.19710 * 21 20 19 23 23 H 0.97002 * 126.15956 * 179.70036 * 22 21 20 24 24 C 1.35012 * 108.27388 * 359.97438 * 19 18 17 25 25 C 1.50703 * 109.46798 * 274.99850 * 10 9 7 26 26 C 1.38238 * 119.99924 * 319.72739 * 25 10 9 27 27 C 1.38234 * 119.99674 * 179.78836 * 26 25 10 28 28 C 1.38239 * 120.00195 * 0.44456 * 27 26 25 29 29 C 1.38236 * 119.99941 * 359.80726 * 28 27 26 30 30 C 1.38234 * 120.00005 * 140.00168 * 25 10 9 31 31 H 0.96996 * 119.99894 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99786 * 0.02562 * 9 7 2 33 33 H 1.09008 * 109.47297 * 184.99659 * 12 10 9 34 34 H 1.09001 * 109.47245 * 64.99924 * 12 10 9 35 35 H 0.96990 * 120.00199 * 0.02562 * 13 12 10 36 36 H 1.08005 * 125.86025 * 359.94527 * 17 16 14 37 37 H 1.08006 * 125.78899 * 359.95637 * 20 19 18 38 38 H 1.07997 * 125.92926 * 180.02562 * 21 20 19 39 39 H 1.07996 * 120.00275 * 359.97438 * 26 25 10 40 40 H 1.08000 * 120.00372 * 180.27370 * 27 26 25 41 41 H 1.08000 * 120.00226 * 179.83255 * 28 27 26 42 42 H 1.07994 * 120.00367 * 180.02562 * 29 28 27 43 43 H 1.08004 * 119.99719 * 359.97438 * 30 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9689 -3.5505 0.5888 12 6 1.1810 -4.7521 0.6091 13 7 0.7345 -4.3355 1.9407 14 6 -0.0554 -5.1473 2.6712 15 8 -0.3973 -6.2268 2.2248 16 6 -0.5017 -4.7306 4.0039 17 6 -0.1903 -3.5168 4.6537 18 7 -0.7731 -3.5165 5.8215 19 7 -1.4815 -4.7125 5.9873 20 6 -2.2888 -5.4220 6.8601 21 6 -2.6099 -6.5802 6.2888 22 7 -2.0089 -6.6278 5.0468 23 1 -2.0669 -7.3577 4.4105 24 6 -1.3175 -5.4594 4.8745 25 6 2.4165 -4.0299 -1.4160 26 6 1.5056 -3.8274 -2.4359 27 6 1.8360 -4.1655 -3.7349 28 6 3.0738 -4.7147 -4.0127 29 6 3.9828 -4.9220 -2.9920 30 6 3.6540 -4.5798 -1.6936 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.7559 -5.6746 0.6908 34 1 0.3134 -4.9200 -0.0291 35 1 1.0066 -3.4751 2.2963 36 1 0.4250 -2.7246 4.2534 37 1 -2.6043 -5.0916 7.8388 38 1 -3.2302 -7.3504 6.7227 39 1 0.5369 -3.4022 -2.2183 40 1 1.1260 -4.0033 -4.5324 41 1 3.3309 -4.9814 -5.0271 42 1 4.9500 -5.3506 -3.2090 43 1 4.3642 -4.7417 -0.8962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713703603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:36 Heat of formation + Delta-G solvation = 117.215538 kcal Electronic energy + Delta-G solvation = -28194.654211 eV Core-core repulsion = 24242.428944 eV Total energy + Delta-G solvation = -3952.225268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.05055 -40.63942 -39.94394 -38.91623 -37.30342 -35.10422 -33.80953 -33.43945 -31.67276 -31.15035 -30.68338 -30.03940 -28.40736 -25.68618 -24.50161 -23.59484 -23.27672 -23.06118 -22.04517 -21.44371 -21.22392 -19.39261 -18.89035 -17.72779 -17.30758 -17.24374 -17.01469 -16.72600 -16.45124 -16.04241 -15.79771 -15.68028 -15.59455 -15.16535 -14.90050 -14.62973 -14.28324 -14.14342 -14.10062 -14.00431 -13.74652 -13.57264 -13.37181 -12.88988 -12.77944 -12.37453 -12.14871 -12.06157 -11.93530 -11.79703 -11.59968 -11.56591 -11.01980 -10.85282 -10.17117 -9.96942 -9.65057 -9.49539 -8.99129 -8.62777 -7.88195 -5.17332 0.61686 0.67024 0.67629 0.78726 1.06470 1.46593 1.49974 1.52234 1.60122 1.96162 2.41506 2.53819 2.59753 3.05456 3.35609 3.46947 3.78973 3.85139 4.09312 4.10856 4.16976 4.19844 4.25012 4.35467 4.42527 4.43170 4.46715 4.54797 4.73802 4.77163 4.82862 4.88196 4.90722 5.08418 5.26221 5.33780 5.42235 5.56644 5.61021 5.72468 5.76327 5.84492 5.97670 6.25162 6.28611 6.32135 6.62743 6.77146 7.38468 7.40013 8.08019 8.34826 9.34046 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009884 B = 0.003372 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.298788 B = 8301.122275 C =10572.756273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.062 4.062 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.303 1.303 6 H -0.295 1.295 7 C -0.227 4.227 8 H 0.075 0.925 9 N -0.718 5.718 10 C 0.204 3.796 11 H 0.072 0.928 12 C 0.137 3.863 13 N -0.709 5.709 14 C 0.599 3.401 15 O -0.608 6.608 16 C -0.359 4.359 17 C 0.129 3.871 18 N -0.330 5.330 19 N -0.312 5.312 20 C -0.030 4.030 21 C 0.060 3.940 22 N -0.565 5.565 23 H 0.450 0.550 24 C 0.295 3.705 25 C -0.099 4.099 26 C -0.110 4.110 27 C -0.137 4.137 28 C -0.131 4.131 29 C -0.126 4.126 30 C -0.127 4.127 31 H 0.248 0.752 32 H 0.375 0.625 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.409 0.591 36 H 0.211 0.789 37 H 0.222 0.778 38 H 0.263 0.737 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 -16.857 8.929 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.255 4.255 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.230 1.230 6 H -0.222 1.222 7 C -0.358 4.358 8 H 0.093 0.907 9 N -0.357 5.357 10 C 0.094 3.906 11 H 0.090 0.910 12 C 0.013 3.987 13 N -0.358 5.358 14 C 0.390 3.610 15 O -0.492 6.492 16 C -0.379 4.379 17 C -0.053 4.053 18 N -0.152 5.152 19 N -0.082 5.082 20 C -0.154 4.154 21 C -0.067 4.067 22 N -0.177 5.177 23 H 0.294 0.706 24 C 0.056 3.944 25 C -0.103 4.103 26 C -0.129 4.129 27 C -0.155 4.155 28 C -0.149 4.149 29 C -0.144 4.144 30 C -0.145 4.145 31 H 0.057 0.943 32 H 0.207 0.793 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.245 0.755 36 H 0.227 0.773 37 H 0.239 0.761 38 H 0.279 0.721 39 H 0.113 0.887 40 H 0.145 0.855 41 H 0.162 0.838 42 H 0.165 0.835 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.380 -16.738 9.800 19.444 hybrid contribution -0.007 1.180 -1.189 1.675 sum -1.387 -15.558 8.610 17.835 Atomic orbital electron populations 1.69808 1.06345 1.25600 1.59562 1.25324 0.96017 1.00278 1.03898 0.85273 0.78446 0.80966 0.76251 1.19237 1.23044 1.22228 1.19498 0.91209 0.84635 1.40499 0.90721 1.42491 1.05252 1.00023 1.87947 1.19552 0.94841 0.85142 0.91029 0.91047 1.21362 0.97583 0.96972 0.82818 1.45579 1.51129 1.21750 1.17373 1.17088 0.77093 0.83167 0.83628 1.90661 1.60489 1.24279 1.73815 1.18443 1.20407 0.99906 0.99192 1.24268 0.95168 0.95935 0.89975 1.77372 1.17333 0.99360 1.21103 1.47337 1.34884 1.12861 1.13155 1.22504 1.01083 0.91805 1.00025 1.23321 1.00587 0.99651 0.83134 1.41819 1.42194 1.15080 1.18652 0.70647 1.19333 0.96968 0.86928 0.91140 1.20869 0.94724 0.97413 0.97271 1.20950 0.99407 0.98913 0.93624 1.21338 0.98099 0.99934 0.96134 1.21383 0.93519 0.99736 1.00290 1.21409 1.00315 1.00234 0.92434 1.21283 0.95946 0.99355 0.97941 0.94314 0.79260 0.90532 0.93558 0.75453 0.77271 0.76134 0.72085 0.88690 0.85494 0.83833 0.83550 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.83 13.06 21.65 0.28 -56.55 16 2 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 3 Si 0.96 45.23 29.55 68.60 2.03 47.26 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 6 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.23 -11.73 9.92 84.03 0.83 -10.90 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 9 N -0.72 -33.32 3.81 -326.50 -1.24 -34.56 16 10 C 0.20 7.67 2.64 44.24 0.12 7.79 16 11 H 0.07 2.60 7.94 -2.39 -0.02 2.58 16 12 C 0.14 4.90 5.21 86.38 0.45 5.35 16 13 N -0.71 -25.20 5.38 -467.15 -2.51 -27.71 16 14 C 0.60 22.12 7.78 86.42 0.67 22.79 16 15 O -0.61 -24.72 16.91 -4.39 -0.07 -24.80 16 16 C -0.36 -12.04 6.15 -20.00 -0.12 -12.17 16 17 C 0.13 4.14 11.48 85.61 0.98 5.13 16 18 N -0.33 -10.64 12.61 -56.32 -0.71 -11.35 16 19 N -0.31 -8.45 4.67 -191.50 -0.89 -9.34 16 20 C -0.03 -0.46 11.91 82.49 0.98 0.52 16 21 C 0.06 0.55 11.92 82.56 0.98 1.53 16 22 N -0.56 -10.20 6.24 -191.83 -1.20 -11.40 16 23 H 0.45 6.80 8.96 -92.71 -0.83 5.97 16 24 C 0.29 8.39 8.38 133.14 1.12 9.51 16 25 C -0.10 -3.60 4.92 -19.86 -0.10 -3.70 16 26 C -0.11 -4.19 9.32 22.27 0.21 -3.99 16 27 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 28 C -0.13 -3.54 10.05 22.27 0.22 -3.31 16 29 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 30 C -0.13 -3.84 9.67 22.27 0.22 -3.63 16 31 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.37 19.30 7.80 -92.71 -0.72 18.57 16 33 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.41 14.46 7.07 -92.72 -0.66 13.81 16 36 H 0.21 5.98 7.49 -2.91 -0.02 5.96 16 37 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.26 -0.96 8.06 -2.91 -0.02 -0.98 16 39 H 0.09 4.05 7.73 -2.91 -0.02 4.03 16 40 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 41 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 42 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 43 H 0.13 3.46 8.04 -2.91 -0.02 3.44 16 Total: -1.00 -78.15 376.24 2.03 -76.12 By element: Atomic # 1 Polarization: 48.74 SS G_CDS: -1.13 Total: 47.61 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 7.48 Total: 4.73 kcal Atomic # 7 Polarization: -144.64 SS G_CDS: -6.28 Total: -150.92 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.07 Total: -24.80 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -78.15 2.03 -76.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713703603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.333 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds