Wall clock time and date at job start Sat Apr 11 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72205 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72053 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72089 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.08001 * 120.00353 * 0.28242 * 7 2 1 9 9 N 1.36936 * 119.99709 * 180.27733 * 7 2 1 10 10 C 1.46507 * 119.99957 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47062 * 324.99951 * 10 9 7 12 12 C 1.52994 * 109.47127 * 205.00153 * 10 9 7 13 13 N 1.46496 * 109.47529 * 54.99945 * 12 10 9 14 14 C 1.34772 * 120.00307 * 179.97438 * 13 12 10 15 15 O 1.21714 * 120.00034 * 0.02562 * 14 13 12 16 16 C 1.46599 * 119.99920 * 179.97438 * 14 13 12 17 17 C 1.41151 * 126.56259 * 359.69240 * 16 14 13 18 18 N 1.30531 * 108.27102 * 179.81655 * 17 16 14 19 19 N 1.39991 * 109.37165 * 0.44715 * 18 17 16 20 20 C 1.38442 * 143.85031 * 179.71456 * 19 18 17 21 21 C 1.33077 * 108.42143 * 179.97438 * 20 19 18 22 22 N 1.38058 * 108.13611 * 0.02562 * 21 20 19 23 23 H 0.97000 * 126.15745 * 179.97438 * 22 21 20 24 24 C 1.35011 * 108.27087 * 359.71647 * 19 18 17 25 25 C 1.50705 * 109.47055 * 84.99766 * 10 9 7 26 26 C 1.38231 * 119.99711 * 39.73208 * 25 10 9 27 27 C 1.38242 * 119.99895 * 179.78718 * 26 25 10 28 28 C 1.38229 * 119.99800 * 0.44073 * 27 26 25 29 29 C 1.38240 * 119.99882 * 359.80853 * 28 27 26 30 30 C 1.38227 * 119.99959 * 220.00114 * 25 10 9 31 31 H 0.97004 * 119.99499 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00448 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47365 * 175.00147 * 12 10 9 34 34 H 1.09003 * 109.47129 * 294.99560 * 12 10 9 35 35 H 0.97003 * 119.99742 * 359.97438 * 13 12 10 36 36 H 1.08000 * 125.86509 * 359.97438 * 17 16 14 37 37 H 1.07999 * 125.78983 * 359.96232 * 20 19 18 38 38 H 1.08001 * 125.93146 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.00152 * 359.97438 * 26 25 10 40 40 H 1.08002 * 120.00193 * 180.27072 * 27 26 25 41 41 H 1.07997 * 120.00403 * 179.83728 * 28 27 26 42 42 H 1.08004 * 119.99839 * 180.02562 * 29 28 27 43 43 H 1.07999 * 120.00361 * 359.97438 * 30 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5037 2.0428 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0101 -1.2022 0.0059 8 1 1.4701 -2.1376 0.0058 9 7 3.3795 -1.2023 0.0116 10 6 4.1120 -2.4711 0.0172 11 1 3.5621 -3.2054 0.6059 12 6 5.4965 -2.2579 0.6323 13 7 5.3535 -1.6602 1.9620 14 6 6.4483 -1.3816 2.6970 15 8 7.5560 -1.6262 2.2557 16 6 6.3051 -0.7829 4.0275 17 6 5.0959 -0.4372 4.6682 18 7 5.3819 0.0645 5.8388 19 7 6.7712 0.0794 6.0108 20 6 7.7855 0.4247 6.8875 21 6 8.9513 0.1208 6.3224 22 7 8.6976 -0.4215 5.0784 23 1 9.3616 -0.7334 4.4438 24 6 7.3405 -0.4394 4.9019 25 6 4.2617 -2.9709 -1.3966 26 6 4.5350 -2.0814 -2.4188 27 6 4.6768 -2.5404 -3.7150 28 6 4.5362 -3.8877 -3.9904 29 6 4.2578 -4.7766 -2.9688 30 6 4.1203 -4.3181 -1.6720 31 1 -0.4849 0.8401 -0.0004 32 1 3.8646 -0.3623 0.0112 33 1 6.0076 -3.2169 0.7180 34 1 6.0785 -1.5919 -0.0049 35 1 4.4708 -1.4649 2.3136 36 1 4.1042 -0.5680 4.2611 37 1 7.6530 0.8660 7.8642 38 1 9.9267 0.2728 6.7605 39 1 4.6408 -1.0282 -2.2043 40 1 4.8947 -1.8461 -4.5130 41 1 4.6444 -4.2461 -5.0034 42 1 4.1484 -5.8293 -3.1839 43 1 3.9029 -5.0125 -0.8740 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713703604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:40 Heat of formation + Delta-G solvation = 144.245174 kcal Electronic energy + Delta-G solvation = -28307.521023 eV Core-core repulsion = 24356.467848 eV Total energy + Delta-G solvation = -3951.053175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.21229 -39.41520 -38.76870 -37.96715 -35.94898 -33.54706 -32.84460 -31.97343 -30.48069 -29.98459 -29.77159 -29.10444 -27.26633 -23.93974 -22.89066 -22.65616 -22.29324 -21.87644 -21.17836 -20.29280 -19.96957 -18.22420 -17.61062 -16.52961 -16.34223 -16.21632 -16.03842 -15.36603 -15.29035 -14.87928 -14.62884 -14.41584 -14.19743 -14.13324 -13.63809 -13.36855 -13.16666 -12.92023 -12.83931 -12.80148 -12.71507 -12.40123 -12.16023 -11.36393 -11.04792 -11.00714 -10.83570 -10.72969 -10.69837 -10.55807 -10.14534 -9.64615 -9.63231 -9.31005 -9.07894 -8.70852 -8.43596 -8.22721 -7.73219 -7.40128 -5.82509 -3.20858 1.42376 1.74544 1.82870 1.87699 1.89438 2.34633 2.62822 3.33913 3.37734 3.43781 3.61375 3.71573 4.22416 4.28460 4.53598 4.53775 4.69132 5.02448 5.09288 5.11724 5.31034 5.35911 5.39649 5.40505 5.47303 5.51521 5.56037 5.64037 5.75230 5.78862 6.00345 6.04579 6.15331 6.36192 6.40840 6.45246 6.58011 6.68550 6.81738 6.89660 6.92026 6.97292 7.21693 7.48804 7.59786 7.91478 7.97751 8.35177 8.63120 9.11666 9.83397 10.01170 11.35180 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003471 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.361817 B = 8064.157360 C = 9927.682799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.014 3.986 3 Si 0.876 3.124 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.739 5.739 10 C 0.204 3.796 11 H 0.075 0.925 12 C 0.122 3.878 13 N -0.714 5.714 14 C 0.601 3.399 15 O -0.578 6.578 16 C -0.332 4.332 17 C 0.131 3.869 18 N -0.300 5.300 19 N -0.309 5.309 20 C 0.003 3.997 21 C 0.024 3.976 22 N -0.574 5.574 23 H 0.443 0.557 24 C 0.319 3.681 25 C -0.079 4.079 26 C -0.088 4.088 27 C -0.127 4.127 28 C -0.133 4.133 29 C -0.128 4.128 30 C -0.116 4.116 31 H 0.260 0.740 32 H 0.364 0.636 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.408 0.592 36 H 0.205 0.795 37 H 0.191 0.809 38 H 0.204 0.796 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.286 -3.403 8.464 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.183 4.183 3 Si 0.706 3.294 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.381 5.381 10 C 0.093 3.907 11 H 0.093 0.907 12 C -0.002 4.002 13 N -0.365 5.365 14 C 0.390 3.610 15 O -0.460 6.460 16 C -0.352 4.352 17 C -0.052 4.052 18 N -0.122 5.122 19 N -0.079 5.079 20 C -0.123 4.123 21 C -0.104 4.104 22 N -0.187 5.187 23 H 0.285 0.715 24 C 0.083 3.917 25 C -0.083 4.083 26 C -0.106 4.106 27 C -0.145 4.145 28 C -0.151 4.151 29 C -0.146 4.146 30 C -0.135 4.135 31 H 0.070 0.930 32 H 0.197 0.803 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.245 0.755 36 H 0.222 0.778 37 H 0.208 0.792 38 H 0.221 0.779 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 18.230 -3.085 9.328 20.709 hybrid contribution 0.607 0.982 -1.039 1.553 sum 18.837 -2.103 8.289 20.687 Atomic orbital electron populations 1.69690 1.05110 1.25886 1.56802 1.24620 0.95090 0.96953 1.01621 0.86701 0.79435 0.85369 0.77939 1.21134 1.21673 1.20004 1.19017 0.80104 0.94755 1.43757 0.89003 1.42825 1.04206 1.01414 1.89661 1.19454 0.90548 0.90175 0.90513 0.90734 1.21567 0.97418 0.98283 0.82951 1.45652 1.09344 1.63785 1.17752 1.16837 0.84176 0.76945 0.83013 1.90712 1.25675 1.56525 1.73122 1.18507 0.89305 1.27884 0.99510 1.24179 0.98896 0.92086 0.90084 1.77540 0.83679 1.30448 1.20489 1.47086 1.05718 1.42574 1.12502 1.21575 0.81890 1.10171 0.98681 1.22256 0.99804 1.02795 0.85556 1.41553 1.04391 1.55460 1.17247 0.71474 1.19218 0.83530 0.97852 0.91137 1.20850 0.96636 0.92955 0.97817 1.20920 0.97794 0.99673 0.92221 1.21082 1.01228 0.95513 0.96693 1.20984 1.01838 0.93706 0.98575 1.21004 1.01282 0.99046 0.93241 1.21008 1.00721 0.95275 0.96496 0.92961 0.80262 0.91215 0.91784 0.75538 0.77846 0.79152 0.77929 0.86460 0.86867 0.87016 0.86864 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.97 55.49 0.78 -27.24 16 2 C 0.01 0.38 5.50 -17.43 -0.10 0.28 16 3 Si 0.88 21.20 27.74 -169.99 -4.71 16.49 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.21 6.52 56.52 0.37 -5.85 16 7 C -0.25 -6.40 10.40 -15.06 -0.16 -6.56 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 N -0.74 -15.69 3.59 -54.55 -0.20 -15.89 16 10 C 0.20 3.60 2.65 -69.08 -0.18 3.42 16 11 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 12 C 0.12 1.98 5.21 -4.05 -0.02 1.96 16 13 N -0.71 -11.47 5.38 -61.65 -0.33 -11.80 16 14 C 0.60 10.09 7.78 -12.89 -0.10 9.99 16 15 O -0.58 -10.87 16.91 5.18 0.09 -10.78 16 16 C -0.33 -5.09 6.15 -104.83 -0.65 -5.74 16 17 C 0.13 1.90 11.48 -17.00 -0.20 1.70 16 18 N -0.30 -4.54 12.61 30.85 0.39 -4.15 16 19 N -0.31 -4.07 4.67 -11.88 -0.06 -4.13 16 20 C 0.00 0.03 11.91 -16.36 -0.19 -0.17 16 21 C 0.02 0.14 11.92 -16.54 -0.20 -0.06 16 22 N -0.57 -5.36 6.24 -11.98 -0.07 -5.44 16 23 H 0.44 3.45 8.96 -40.82 -0.37 3.08 16 24 C 0.32 4.34 8.38 -154.52 -1.29 3.04 16 25 C -0.08 -1.38 4.92 -104.63 -0.52 -1.90 16 26 C -0.09 -1.55 9.33 -39.58 -0.37 -1.92 16 27 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 28 C -0.13 -1.93 10.05 -39.58 -0.40 -2.32 16 29 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 30 C -0.12 -1.83 9.67 -39.59 -0.38 -2.22 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.36 7.82 5.66 -40.82 -0.23 7.59 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.41 6.40 7.07 -40.82 -0.29 6.11 16 36 H 0.21 2.50 7.49 -52.49 -0.39 2.11 16 37 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.20 0.17 8.06 -52.49 -0.42 -0.26 16 39 H 0.12 2.14 7.71 -52.49 -0.40 1.73 16 40 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.12 1.62 8.04 -52.49 -0.42 1.20 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -35.95 373.10 -9.11 -45.06 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -5.07 Total: 17.38 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -5.54 Total: -5.13 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: 0.51 Total: -68.64 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.71 Total: 16.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.95 -9.11 -45.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713703604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.303 kcal (2) G-P(sol) polarization free energy of solvation -35.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds