Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72205 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72053 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72089 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.08001 * 120.00353 * 0.28242 * 7 2 1 9 9 N 1.36936 * 119.99709 * 180.27733 * 7 2 1 10 10 C 1.46507 * 119.99957 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47062 * 324.99951 * 10 9 7 12 12 C 1.52994 * 109.47127 * 205.00153 * 10 9 7 13 13 N 1.46496 * 109.47529 * 54.99945 * 12 10 9 14 14 C 1.34772 * 120.00307 * 179.97438 * 13 12 10 15 15 O 1.21714 * 120.00034 * 0.02562 * 14 13 12 16 16 C 1.46599 * 119.99920 * 179.97438 * 14 13 12 17 17 C 1.41151 * 126.56259 * 359.69240 * 16 14 13 18 18 N 1.30531 * 108.27102 * 179.81655 * 17 16 14 19 19 N 1.39991 * 109.37165 * 0.44715 * 18 17 16 20 20 C 1.38442 * 143.85031 * 179.71456 * 19 18 17 21 21 C 1.33077 * 108.42143 * 179.97438 * 20 19 18 22 22 N 1.38058 * 108.13611 * 0.02562 * 21 20 19 23 23 H 0.97000 * 126.15745 * 179.97438 * 22 21 20 24 24 C 1.35011 * 108.27087 * 359.71647 * 19 18 17 25 25 C 1.50705 * 109.47055 * 84.99766 * 10 9 7 26 26 C 1.38231 * 119.99711 * 39.73208 * 25 10 9 27 27 C 1.38242 * 119.99895 * 179.78718 * 26 25 10 28 28 C 1.38229 * 119.99800 * 0.44073 * 27 26 25 29 29 C 1.38240 * 119.99882 * 359.80853 * 28 27 26 30 30 C 1.38227 * 119.99959 * 220.00114 * 25 10 9 31 31 H 0.97004 * 119.99499 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00448 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47365 * 175.00147 * 12 10 9 34 34 H 1.09003 * 109.47129 * 294.99560 * 12 10 9 35 35 H 0.97003 * 119.99742 * 359.97438 * 13 12 10 36 36 H 1.08000 * 125.86509 * 359.97438 * 17 16 14 37 37 H 1.07999 * 125.78983 * 359.96232 * 20 19 18 38 38 H 1.08001 * 125.93146 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.00152 * 359.97438 * 26 25 10 40 40 H 1.08002 * 120.00193 * 180.27072 * 27 26 25 41 41 H 1.07997 * 120.00403 * 179.83728 * 28 27 26 42 42 H 1.08004 * 119.99839 * 180.02562 * 29 28 27 43 43 H 1.07999 * 120.00361 * 359.97438 * 30 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5037 2.0428 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0101 -1.2022 0.0059 8 1 1.4701 -2.1376 0.0058 9 7 3.3795 -1.2023 0.0116 10 6 4.1120 -2.4711 0.0172 11 1 3.5621 -3.2054 0.6059 12 6 5.4965 -2.2579 0.6323 13 7 5.3535 -1.6602 1.9620 14 6 6.4483 -1.3816 2.6970 15 8 7.5560 -1.6262 2.2557 16 6 6.3051 -0.7829 4.0275 17 6 5.0959 -0.4372 4.6682 18 7 5.3819 0.0645 5.8388 19 7 6.7712 0.0794 6.0108 20 6 7.7855 0.4247 6.8875 21 6 8.9513 0.1208 6.3224 22 7 8.6976 -0.4215 5.0784 23 1 9.3616 -0.7334 4.4438 24 6 7.3405 -0.4394 4.9019 25 6 4.2617 -2.9709 -1.3966 26 6 4.5350 -2.0814 -2.4188 27 6 4.6768 -2.5404 -3.7150 28 6 4.5362 -3.8877 -3.9904 29 6 4.2578 -4.7766 -2.9688 30 6 4.1203 -4.3181 -1.6720 31 1 -0.4849 0.8401 -0.0004 32 1 3.8646 -0.3623 0.0112 33 1 6.0076 -3.2169 0.7180 34 1 6.0785 -1.5919 -0.0049 35 1 4.4708 -1.4649 2.3136 36 1 4.1042 -0.5680 4.2611 37 1 7.6530 0.8660 7.8642 38 1 9.9267 0.2728 6.7605 39 1 4.6408 -1.0282 -2.2043 40 1 4.8947 -1.8461 -4.5130 41 1 4.6444 -4.2461 -5.0034 42 1 4.1484 -5.8293 -3.1839 43 1 3.9029 -5.0125 -0.8740 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713703604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = 119.840635 kcal Electronic energy + Delta-G solvation = -28308.579283 eV Core-core repulsion = 24356.467848 eV Total energy + Delta-G solvation = -3952.111435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.07642 -40.70224 -39.98162 -38.94468 -37.44150 -35.15841 -33.86980 -33.53470 -31.85621 -31.50748 -30.71157 -30.10149 -28.54326 -25.52319 -24.41375 -23.63125 -23.29591 -23.08354 -22.07138 -21.49326 -21.29053 -19.88696 -18.97890 -17.73887 -17.33352 -17.27649 -17.02397 -16.86713 -16.49292 -16.06531 -15.83312 -15.77878 -15.64257 -15.13379 -14.80676 -14.73870 -14.32289 -14.23543 -14.17197 -14.06806 -13.99285 -13.61510 -13.49630 -13.03746 -12.87998 -12.43479 -12.16309 -12.10892 -11.98765 -11.76246 -11.67534 -11.59556 -11.07228 -10.88911 -10.19984 -10.02257 -9.66946 -9.57589 -9.27872 -8.65803 -7.97809 -5.31894 0.59400 0.64748 0.65526 0.75692 1.04063 1.39627 1.40818 1.44128 1.47394 1.93720 2.37035 2.49116 2.49796 3.02251 3.32328 3.36299 3.53325 3.77075 4.00446 4.07522 4.13398 4.14531 4.20564 4.32718 4.37622 4.40245 4.43667 4.51300 4.71144 4.74275 4.79725 4.85040 4.87265 5.03580 5.23274 5.30764 5.39298 5.53063 5.71016 5.73278 5.80687 5.82206 5.91551 6.23126 6.25488 6.27384 6.59250 6.72606 7.09538 7.34109 7.82407 8.02123 9.23452 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003471 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.361817 B = 8064.157360 C = 9927.682799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.049 4.049 3 Si 0.937 3.063 4 H -0.288 1.288 5 H -0.300 1.300 6 H -0.252 1.252 7 C -0.214 4.214 8 H 0.063 0.937 9 N -0.736 5.736 10 C 0.209 3.791 11 H 0.073 0.927 12 C 0.135 3.865 13 N -0.714 5.714 14 C 0.601 3.399 15 O -0.604 6.604 16 C -0.361 4.361 17 C 0.126 3.874 18 N -0.329 5.329 19 N -0.312 5.312 20 C -0.030 4.030 21 C 0.060 3.940 22 N -0.564 5.564 23 H 0.451 0.549 24 C 0.295 3.705 25 C -0.100 4.100 26 C -0.114 4.114 27 C -0.136 4.136 28 C -0.131 4.131 29 C -0.127 4.127 30 C -0.127 4.127 31 H 0.256 0.744 32 H 0.365 0.635 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.409 0.591 36 H 0.213 0.787 37 H 0.221 0.779 38 H 0.263 0.737 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.439 -3.841 8.909 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.241 4.241 3 Si 0.766 3.234 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.176 1.176 7 C -0.345 4.345 8 H 0.080 0.920 9 N -0.379 5.379 10 C 0.100 3.900 11 H 0.091 0.909 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.392 3.608 15 O -0.488 6.488 16 C -0.381 4.381 17 C -0.057 4.057 18 N -0.151 5.151 19 N -0.082 5.082 20 C -0.154 4.154 21 C -0.066 4.066 22 N -0.177 5.177 23 H 0.294 0.706 24 C 0.057 3.943 25 C -0.103 4.103 26 C -0.132 4.132 27 C -0.154 4.154 28 C -0.149 4.149 29 C -0.145 4.145 30 C -0.145 4.145 31 H 0.065 0.935 32 H 0.198 0.802 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.246 0.754 36 H 0.229 0.771 37 H 0.238 0.762 38 H 0.279 0.721 39 H 0.121 0.879 40 H 0.149 0.851 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 21.451 -3.552 9.784 23.843 hybrid contribution -0.200 0.988 -1.134 1.517 sum 21.250 -2.564 8.651 23.086 Atomic orbital electron populations 1.69849 1.06938 1.26292 1.59921 1.25227 0.95670 1.00189 1.02972 0.85687 0.78949 0.81130 0.77647 1.21442 1.22716 1.17646 1.18902 0.81921 0.93279 1.40417 0.91951 1.42713 1.02577 1.02957 1.89641 1.19509 0.90833 0.88393 0.91274 0.90882 1.21419 0.96180 0.98598 0.82799 1.45637 1.09388 1.63797 1.17617 1.17053 0.83742 0.76549 0.83487 1.90675 1.26410 1.57875 1.73843 1.18442 0.90527 1.29717 0.99397 1.24319 0.99273 0.92004 0.90066 1.77392 0.85515 1.31382 1.20842 1.47337 1.05413 1.42226 1.13273 1.22497 0.81267 1.11683 0.99959 1.23317 1.01374 0.98782 0.83174 1.41823 1.02922 1.54433 1.18508 0.70592 1.19344 0.85199 0.98567 0.91200 1.20757 0.98447 0.94060 0.97049 1.20983 0.99537 0.99169 0.93513 1.21363 1.00883 0.96817 0.96299 1.21400 1.00248 0.93051 1.00210 1.21412 0.99781 1.00769 0.92498 1.21272 1.00528 0.94757 0.97956 0.93541 0.80172 0.90154 0.92580 0.75439 0.77091 0.76203 0.72128 0.87875 0.85090 0.83855 0.83737 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.16 13.97 21.65 0.30 -60.86 16 2 C -0.05 -2.76 5.50 84.86 0.47 -2.29 16 3 Si 0.94 44.84 27.74 68.60 1.90 46.74 16 4 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 5 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.25 -10.95 6.52 99.48 0.65 -10.31 16 7 C -0.21 -11.39 10.40 84.03 0.87 -10.52 16 8 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 9 N -0.74 -31.67 3.59 -326.48 -1.17 -32.84 16 10 C 0.21 7.45 2.65 44.24 0.12 7.57 16 11 H 0.07 2.63 7.94 -2.39 -0.02 2.61 16 12 C 0.13 4.37 5.21 86.38 0.45 4.82 16 13 N -0.71 -23.20 5.38 -467.16 -2.51 -25.71 16 14 C 0.60 20.39 7.78 86.42 0.67 21.06 16 15 O -0.60 -22.73 16.91 -4.39 -0.07 -22.81 16 16 C -0.36 -11.20 6.15 -20.00 -0.12 -11.32 16 17 C 0.13 3.76 11.48 85.60 0.98 4.74 16 18 N -0.33 -10.05 12.61 -56.33 -0.71 -10.76 16 19 N -0.31 -7.91 4.67 -191.51 -0.89 -8.81 16 20 C -0.03 -0.42 11.91 82.49 0.98 0.57 16 21 C 0.06 0.47 11.92 82.56 0.98 1.45 16 22 N -0.56 -9.16 6.24 -191.82 -1.20 -10.35 16 23 H 0.45 5.95 8.96 -92.71 -0.83 5.12 16 24 C 0.30 7.80 8.38 133.14 1.12 8.92 16 25 C -0.10 -3.48 4.92 -19.87 -0.10 -3.58 16 26 C -0.11 -4.01 9.33 22.27 0.21 -3.80 16 27 C -0.14 -4.08 10.05 22.27 0.22 -3.86 16 28 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 29 C -0.13 -3.34 10.05 22.27 0.22 -3.11 16 30 C -0.13 -3.82 9.67 22.27 0.22 -3.61 16 31 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.36 15.68 5.66 -92.71 -0.52 15.16 16 33 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.41 13.11 7.07 -92.71 -0.66 12.46 16 36 H 0.21 5.47 7.49 -2.91 -0.02 5.45 16 37 H 0.22 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.26 -1.29 8.06 -2.91 -0.02 -1.31 16 39 H 0.10 3.83 7.71 -2.91 -0.02 3.81 16 40 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 41 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.13 3.47 8.04 -2.91 -0.02 3.45 16 Total: -1.00 -81.49 373.10 2.18 -79.32 By element: Atomic # 1 Polarization: 43.25 SS G_CDS: -0.99 Total: 42.26 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 7.52 Total: 3.82 kcal Atomic # 7 Polarization: -143.14 SS G_CDS: -6.18 Total: -149.33 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.07 Total: -22.81 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.90 Total: 46.74 kcal Total: -81.49 2.18 -79.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713703604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.157 kcal (2) G-P(sol) polarization free energy of solvation -81.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds