Wall clock time and date at job start Sat Apr 11 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99729 * 2 1 4 4 C 1.50696 * 109.47282 * 180.02562 * 3 2 1 5 5 N 1.29431 * 124.81028 * 89.97461 * 4 3 2 6 6 C 1.30940 * 117.36612 * 180.02562 * 5 4 3 7 7 C 1.35652 * 114.19431 * 359.97438 * 6 5 4 8 8 C 1.46681 * 126.13404 * 180.02562 * 7 6 5 9 9 O 1.21696 * 119.99915 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00487 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00294 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.05347 * 33.57980 * 11 10 8 13 13 C 1.53875 * 110.02695 * 272.16281 * 11 10 8 14 14 C 1.54263 * 106.59838 * 240.71111 * 13 11 10 15 15 C 1.55030 * 104.28052 * 23.52488 * 14 13 11 16 16 C 1.54263 * 110.03322 * 155.00030 * 11 10 8 17 17 H 1.09001 * 110.48393 * 214.48316 * 16 11 10 18 18 C 1.52997 * 110.48585 * 336.99063 * 16 11 10 19 19 N 1.46506 * 109.47289 * 183.16233 * 18 16 11 20 20 C 1.36930 * 120.00258 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99823 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00439 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99225 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00268 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47312 * 60.00457 * 24 22 20 26 26 H 1.48506 * 109.46866 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47236 * 300.00219 * 24 22 20 28 28 S 1.70963 * 124.80381 * 270.32879 * 4 3 2 29 29 H 1.09003 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47451 * 300.00186 * 1 2 3 31 31 H 1.08996 * 109.47251 * 60.00578 * 1 2 3 32 32 H 1.09004 * 109.47437 * 59.99476 * 3 2 1 33 33 H 1.09005 * 109.47061 * 299.99444 * 3 2 1 34 34 H 1.08001 * 122.90086 * 179.97438 * 6 5 4 35 35 H 0.96995 * 120.00091 * 359.97438 * 10 8 7 36 36 H 1.08998 * 110.03643 * 359.97438 * 13 11 10 37 37 H 1.09008 * 110.03160 * 121.38280 * 13 11 10 38 38 H 1.09003 * 110.48597 * 142.28800 * 14 13 11 39 39 H 1.09000 * 110.49099 * 264.80438 * 14 13 11 40 40 H 1.08997 * 110.87595 * 203.90175 * 15 14 13 41 41 H 1.08999 * 110.70059 * 80.47850 * 15 14 13 42 42 H 1.09001 * 109.47289 * 63.16105 * 18 16 11 43 43 H 1.09004 * 109.47261 * 303.16361 * 18 16 11 44 44 H 0.97001 * 119.99251 * 0.02562 * 19 18 16 45 45 H 0.97000 * 119.99950 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 7 4.2485 1.1280 -1.0636 6 6 5.5428 1.0251 -0.8945 7 6 5.9331 0.9947 0.4043 8 6 7.3127 0.8857 0.8905 9 8 8.2332 0.8121 0.0979 10 7 7.5609 0.8660 2.2151 11 6 8.9389 0.7577 2.7007 12 1 9.6166 1.2727 2.0199 13 6 9.3394 -0.7229 2.8236 14 6 9.6799 -0.9654 4.3086 15 6 8.9091 0.1473 5.0643 16 6 9.0498 1.3632 4.1152 17 1 10.0196 1.8423 4.2501 18 6 7.9202 2.3660 4.3585 19 7 8.0897 2.9822 5.6768 20 6 7.1915 3.9178 6.1159 21 1 6.3578 4.2013 5.4905 22 6 7.3518 4.5014 7.3652 23 7 8.3675 4.1555 8.1274 24 14 6.1269 5.7782 7.9638 25 1 4.7711 5.1750 8.0211 26 1 6.5195 6.2440 9.3182 27 1 6.1165 6.9312 7.0280 28 16 4.4851 1.1013 1.4027 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6884 1.8465 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 6.2394 0.9693 -1.7180 35 1 6.8273 0.9243 2.8469 36 1 8.5085 -1.3608 2.5225 37 1 10.2112 -0.9267 2.2018 38 1 9.3350 -1.9504 4.6231 39 1 10.7526 -0.8667 4.4751 40 1 9.3727 0.3545 6.0288 41 1 7.8614 -0.1263 5.1888 42 1 6.9611 1.8495 4.3195 43 1 7.9483 3.1385 3.5900 44 1 8.8383 2.7273 6.2386 45 1 8.4798 4.5635 9.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716076614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:56 Heat of formation + Delta-G solvation = -25.542746 kcal Electronic energy + Delta-G solvation = -26819.507743 eV Core-core repulsion = 22964.243212 eV Total energy + Delta-G solvation = -3855.264531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.48364 -39.73188 -38.25071 -37.78868 -34.44565 -33.60527 -31.82716 -31.46718 -29.14478 -28.61176 -27.49214 -26.49776 -24.63661 -24.24994 -22.40262 -22.28655 -20.36322 -19.90906 -19.30874 -18.83283 -17.43585 -17.02120 -16.88092 -16.36347 -15.97607 -15.51060 -15.31019 -14.93766 -14.86050 -14.67214 -14.29340 -14.12380 -13.74501 -13.61691 -13.13232 -13.07394 -12.88238 -12.78061 -12.35870 -11.90830 -11.80507 -11.61916 -11.28252 -10.91299 -10.90026 -10.82847 -10.55017 -10.40668 -10.38874 -10.36737 -10.17571 -10.04446 -9.91941 -9.76460 -9.72442 -9.29376 -9.04175 -8.91362 -6.97423 -5.80693 -3.09649 -0.07533 0.87706 1.31497 2.16577 3.03273 3.04863 3.29961 3.40542 3.45181 3.46214 3.94395 4.47328 4.48334 4.61808 4.75352 4.78605 4.83511 4.89176 4.94151 4.98294 5.02278 5.08932 5.26519 5.41830 5.49551 5.60820 5.62953 5.73125 5.80733 5.81619 5.88375 6.02536 6.04107 6.17670 6.24172 6.45237 6.50694 6.54879 6.55013 6.69214 6.75675 7.28471 7.42777 7.64545 8.05572 8.37922 9.49367 10.06226 10.41377 11.41987 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008325 B = 0.003428 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3362.643460 B = 8166.175932 C =10618.970564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.137 3.863 4 C 0.043 3.957 5 N -0.461 5.461 6 C 0.115 3.885 7 C -0.285 4.285 8 C 0.595 3.405 9 O -0.529 6.529 10 N -0.710 5.710 11 C 0.148 3.852 12 H 0.093 0.907 13 C -0.132 4.132 14 C -0.125 4.125 15 C -0.113 4.113 16 C -0.108 4.108 17 H 0.090 0.910 18 C 0.164 3.836 19 N -0.728 5.728 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 S 0.210 5.790 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.190 0.810 35 H 0.402 0.598 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.012 0.988 43 H 0.020 0.980 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.948 -10.544 -15.022 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.057 3.943 4 C -0.231 4.231 5 N -0.176 5.176 6 C -0.044 4.044 7 C -0.410 4.410 8 C 0.380 3.620 9 O -0.407 6.407 10 N -0.362 5.362 11 C 0.044 3.956 12 H 0.111 0.889 13 C -0.170 4.170 14 C -0.163 4.163 15 C -0.150 4.150 16 C -0.127 4.127 17 H 0.109 0.891 18 C 0.036 3.964 19 N -0.372 5.372 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 S 0.467 5.533 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.207 0.793 35 H 0.240 0.760 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.030 0.970 43 H 0.038 0.962 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.844 -10.613 -14.942 20.804 hybrid contribution -0.410 0.902 0.122 0.998 sum -10.254 -9.712 -14.820 20.472 Atomic orbital electron populations 1.22823 0.79771 1.03421 1.00488 1.87956 1.20496 1.26104 1.95565 1.20846 0.84253 0.86257 1.02953 1.26932 1.00693 1.03652 0.91841 1.66160 1.04923 1.15310 1.31256 1.22156 0.90549 0.96103 0.95572 1.25981 0.98530 1.18385 0.98096 1.16697 0.85743 0.76670 0.82887 1.90828 1.44179 1.50442 1.55254 1.46215 1.10404 1.73680 1.05949 1.21709 0.81861 0.96099 0.95976 0.88882 1.22580 1.01551 0.95680 0.97226 1.22412 1.00476 0.99002 0.94399 1.22536 1.00513 0.93433 0.98563 1.22498 1.01458 0.96527 0.92258 0.89137 1.20573 0.93739 0.92683 0.89421 1.42313 1.32158 1.47927 1.14843 1.19159 1.04526 1.14364 0.99288 0.91315 1.24731 0.98407 1.00517 0.97125 1.69644 1.30817 1.46303 1.11285 0.86281 0.80618 0.81528 0.77832 1.21248 1.21653 1.21267 1.84163 0.96162 1.62849 1.10131 0.89043 0.93469 0.93542 0.90357 0.89687 0.79277 0.75989 0.91519 0.91209 0.91835 0.91538 0.90606 0.91463 0.97025 0.96231 0.78126 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.65 10.69 -35.23 -0.38 -4.03 16 3 C 0.14 1.16 6.51 36.00 0.23 1.39 16 4 C 0.04 0.48 7.02 -13.29 -0.09 0.39 16 5 N -0.46 -5.80 10.51 -11.50 -0.12 -5.92 16 6 C 0.11 1.43 11.09 -18.86 -0.21 1.22 16 7 C -0.29 -3.68 6.48 -37.10 -0.24 -3.92 16 8 C 0.60 8.65 7.78 -12.85 -0.10 8.55 16 9 O -0.53 -8.96 16.52 5.19 0.09 -8.87 16 10 N -0.71 -9.73 4.34 -54.03 -0.23 -9.96 16 11 C 0.15 2.05 3.12 -66.81 -0.21 1.84 16 12 H 0.09 1.36 7.57 -51.93 -0.39 0.97 16 13 C -0.13 -1.60 6.59 -25.61 -0.17 -1.77 16 14 C -0.13 -1.47 6.83 -25.00 -0.17 -1.64 16 15 C -0.11 -1.62 6.11 -24.66 -0.15 -1.77 16 16 C -0.11 -1.67 2.86 -88.96 -0.25 -1.92 16 17 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 18 C 0.16 3.11 4.80 -4.04 -0.02 3.10 16 19 N -0.73 -17.68 5.47 -59.90 -0.33 -18.00 16 20 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 21 H 0.07 1.81 7.83 -52.48 -0.41 1.39 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 24 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 S 0.21 2.32 22.31 -107.50 -2.40 -0.08 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.19 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.40 5.31 5.70 -40.82 -0.23 5.08 16 36 H 0.07 0.82 7.92 -51.93 -0.41 0.40 16 37 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 42 H 0.01 0.22 6.34 -51.93 -0.33 -0.11 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.38 9.83 7.58 -40.82 -0.31 9.52 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -32.68 386.31 -9.07 -41.76 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.71 Total: 9.63 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.51 Total: -0.39 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.04 Total: -60.73 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.29 Total: -12.90 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.40 Total: -0.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.68 -9.07 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716076614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.214 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds