Wall clock time and date at job start Sat Apr 11 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99729 * 2 1 4 4 C 1.50696 * 109.47282 * 180.02562 * 3 2 1 5 5 N 1.29431 * 124.81028 * 89.97461 * 4 3 2 6 6 C 1.30940 * 117.36612 * 180.02562 * 5 4 3 7 7 C 1.35652 * 114.19431 * 359.97438 * 6 5 4 8 8 C 1.46681 * 126.13404 * 180.02562 * 7 6 5 9 9 O 1.21696 * 119.99915 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00487 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00294 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.05347 * 33.57980 * 11 10 8 13 13 C 1.53875 * 110.02695 * 272.16281 * 11 10 8 14 14 C 1.54263 * 106.59838 * 240.71111 * 13 11 10 15 15 C 1.55030 * 104.28052 * 23.52488 * 14 13 11 16 16 C 1.54263 * 110.03322 * 155.00030 * 11 10 8 17 17 H 1.09001 * 110.48393 * 214.48316 * 16 11 10 18 18 C 1.52997 * 110.48585 * 336.99063 * 16 11 10 19 19 N 1.46506 * 109.47289 * 183.16233 * 18 16 11 20 20 C 1.36930 * 120.00258 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99823 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00439 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99225 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00268 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47312 * 60.00457 * 24 22 20 26 26 H 1.48506 * 109.46866 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47236 * 300.00219 * 24 22 20 28 28 S 1.70963 * 124.80381 * 270.32879 * 4 3 2 29 29 H 1.09003 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47451 * 300.00186 * 1 2 3 31 31 H 1.08996 * 109.47251 * 60.00578 * 1 2 3 32 32 H 1.09004 * 109.47437 * 59.99476 * 3 2 1 33 33 H 1.09005 * 109.47061 * 299.99444 * 3 2 1 34 34 H 1.08001 * 122.90086 * 179.97438 * 6 5 4 35 35 H 0.96995 * 120.00091 * 359.97438 * 10 8 7 36 36 H 1.08998 * 110.03643 * 359.97438 * 13 11 10 37 37 H 1.09008 * 110.03160 * 121.38280 * 13 11 10 38 38 H 1.09003 * 110.48597 * 142.28800 * 14 13 11 39 39 H 1.09000 * 110.49099 * 264.80438 * 14 13 11 40 40 H 1.08997 * 110.87595 * 203.90175 * 15 14 13 41 41 H 1.08999 * 110.70059 * 80.47850 * 15 14 13 42 42 H 1.09001 * 109.47289 * 63.16105 * 18 16 11 43 43 H 1.09004 * 109.47261 * 303.16361 * 18 16 11 44 44 H 0.97001 * 119.99251 * 0.02562 * 19 18 16 45 45 H 0.97000 * 119.99950 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 7 4.2485 1.1280 -1.0636 6 6 5.5428 1.0251 -0.8945 7 6 5.9331 0.9947 0.4043 8 6 7.3127 0.8857 0.8905 9 8 8.2332 0.8121 0.0979 10 7 7.5609 0.8660 2.2151 11 6 8.9389 0.7577 2.7007 12 1 9.6166 1.2727 2.0199 13 6 9.3394 -0.7229 2.8236 14 6 9.6799 -0.9654 4.3086 15 6 8.9091 0.1473 5.0643 16 6 9.0498 1.3632 4.1152 17 1 10.0196 1.8423 4.2501 18 6 7.9202 2.3660 4.3585 19 7 8.0897 2.9822 5.6768 20 6 7.1915 3.9178 6.1159 21 1 6.3578 4.2013 5.4905 22 6 7.3518 4.5014 7.3652 23 7 8.3675 4.1555 8.1274 24 14 6.1269 5.7782 7.9638 25 1 4.7711 5.1750 8.0211 26 1 6.5195 6.2440 9.3182 27 1 6.1165 6.9312 7.0280 28 16 4.4851 1.1013 1.4027 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6884 1.8465 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 6.2394 0.9693 -1.7180 35 1 6.8273 0.9243 2.8469 36 1 8.5085 -1.3608 2.5225 37 1 10.2112 -0.9267 2.2018 38 1 9.3350 -1.9504 4.6231 39 1 10.7526 -0.8667 4.4751 40 1 9.3727 0.3545 6.0288 41 1 7.8614 -0.1263 5.1888 42 1 6.9611 1.8495 4.3195 43 1 7.9483 3.1385 3.5900 44 1 8.8383 2.7273 6.2386 45 1 8.4798 4.5635 9.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716076614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:55 Heat of formation + Delta-G solvation = -48.052690 kcal Electronic energy + Delta-G solvation = -26820.483848 eV Core-core repulsion = 22964.243212 eV Total energy + Delta-G solvation = -3856.240636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.54913 -40.74523 -39.17722 -38.70200 -36.26192 -34.75667 -33.32066 -32.68095 -30.26452 -29.93295 -28.47863 -27.09957 -26.33255 -25.12710 -24.10556 -23.33188 -21.43835 -20.95856 -20.57461 -19.77304 -19.17843 -18.06468 -17.64711 -17.43351 -16.71146 -16.61938 -16.39140 -16.29217 -16.11205 -15.78608 -15.41474 -15.23315 -15.14380 -14.93362 -14.75797 -14.47598 -13.74258 -13.60719 -13.30001 -13.14651 -12.83367 -12.73603 -12.67736 -12.40002 -12.29206 -12.22343 -11.99064 -11.83711 -11.66558 -11.57384 -11.48631 -11.41466 -10.92911 -10.89941 -10.77126 -10.71099 -10.25899 -10.10901 -8.99101 -7.93464 -5.22172 -1.00574 -0.01965 0.39999 1.20386 1.48851 1.51431 1.57450 1.94105 1.98782 2.56958 2.59655 3.23438 3.37136 3.42262 3.65066 3.68207 3.77289 3.85272 4.08879 4.17493 4.22126 4.32537 4.37362 4.47377 4.52852 4.53104 4.55068 4.59088 4.65121 4.75750 4.81521 4.89153 4.89621 5.00875 5.08639 5.19717 5.24210 5.34206 5.44860 5.48769 5.51768 6.01975 6.24174 6.28611 6.42703 6.92905 7.35458 8.10043 8.34329 9.29719 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008325 B = 0.003428 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3362.643460 B = 8166.175932 C =10618.970564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.133 3.867 4 C 0.047 3.953 5 N -0.481 5.481 6 C 0.117 3.883 7 C -0.309 4.309 8 C 0.598 3.402 9 O -0.558 6.558 10 N -0.707 5.707 11 C 0.153 3.847 12 H 0.085 0.915 13 C -0.125 4.125 14 C -0.114 4.114 15 C -0.111 4.111 16 C -0.101 4.101 17 H 0.084 0.916 18 C 0.166 3.834 19 N -0.739 5.739 20 C -0.246 4.246 21 H 0.076 0.924 22 C -0.072 4.072 23 N -0.968 5.968 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.280 1.280 28 S 0.234 5.766 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.196 0.804 35 H 0.405 0.595 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.010 0.990 44 H 0.376 0.624 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.624 -11.051 -15.532 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.053 3.947 4 C -0.227 4.227 5 N -0.196 5.196 6 C -0.042 4.042 7 C -0.434 4.434 8 C 0.384 3.616 9 O -0.438 6.438 10 N -0.359 5.359 11 C 0.048 3.952 12 H 0.103 0.897 13 C -0.163 4.163 14 C -0.151 4.151 15 C -0.148 4.148 16 C -0.120 4.120 17 H 0.102 0.898 18 C 0.039 3.961 19 N -0.382 5.382 20 C -0.378 4.378 21 H 0.094 0.906 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.799 3.201 25 H -0.200 1.200 26 H -0.223 1.223 27 H -0.207 1.207 28 S 0.491 5.509 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.213 0.787 35 H 0.243 0.757 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.028 0.972 44 H 0.208 0.792 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.554 -11.134 -15.474 22.291 hybrid contribution 0.027 1.048 0.213 1.070 sum -11.527 -10.086 -15.261 21.622 Atomic orbital electron populations 1.23027 0.77924 1.04370 1.01717 1.87908 1.22537 1.26591 1.95830 1.21072 0.82449 0.86423 1.04743 1.27521 1.02019 1.01683 0.91506 1.66233 1.04937 1.16512 1.31960 1.22327 0.90878 0.95263 0.95755 1.25834 0.98468 1.20286 0.98769 1.16846 0.86153 0.75949 0.82683 1.90804 1.45266 1.51925 1.55840 1.46172 1.10391 1.73435 1.05894 1.21652 0.81914 0.97236 0.94419 0.89710 1.22527 1.02028 0.94072 0.97685 1.22353 1.00688 0.98676 0.93406 1.22479 1.00648 0.93892 0.97831 1.22382 0.99678 0.96145 0.93837 0.89762 1.20680 0.95742 0.93020 0.86676 1.42494 1.31420 1.47870 1.16437 1.19578 1.04727 1.14215 0.99286 0.90640 1.25526 1.00380 1.02939 0.97617 1.69801 1.32755 1.47812 1.11441 0.85262 0.78838 0.79187 0.76790 1.20025 1.22310 1.20672 1.84019 0.94959 1.62328 1.09558 0.88334 0.92114 0.92418 0.87993 0.88447 0.78714 0.75705 0.91242 0.90232 0.90163 0.90575 0.92180 0.91791 0.95745 0.97195 0.79206 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.48 16 2 O -0.41 -7.05 10.69 -148.98 -1.59 -8.64 16 3 C 0.13 1.97 6.51 71.23 0.46 2.43 16 4 C 0.05 0.97 7.02 88.46 0.62 1.59 16 5 N -0.48 -11.63 10.51 -190.31 -2.00 -13.63 16 6 C 0.12 2.87 11.09 84.23 0.93 3.80 16 7 C -0.31 -7.80 6.48 23.88 0.15 -7.64 16 8 C 0.60 17.15 7.78 86.45 0.67 17.83 16 9 O -0.56 -18.87 16.52 -4.34 -0.07 -18.94 16 10 N -0.71 -18.88 4.34 -443.06 -1.92 -20.81 16 11 C 0.15 4.10 3.12 45.71 0.14 4.24 16 12 H 0.08 2.45 7.57 -2.39 -0.02 2.44 16 13 C -0.12 -2.80 6.59 31.32 0.21 -2.60 16 14 C -0.11 -2.44 6.83 31.72 0.22 -2.22 16 15 C -0.11 -3.09 6.11 31.93 0.20 -2.89 16 16 C -0.10 -3.08 2.86 -9.72 -0.03 -3.11 16 17 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 18 C 0.17 6.26 4.80 86.38 0.41 6.67 16 19 N -0.74 -36.09 5.47 -343.44 -1.88 -37.97 16 20 C -0.25 -13.33 9.99 84.04 0.84 -12.49 16 21 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 22 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 23 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 24 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 S 0.23 4.85 22.31 -56.49 -1.26 3.59 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.20 4.35 8.06 -2.91 -0.02 4.32 16 35 H 0.40 10.31 5.70 -92.71 -0.53 9.79 16 36 H 0.07 1.55 7.92 -2.39 -0.02 1.54 16 37 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 1.82 8.00 -2.39 -0.02 1.80 16 42 H 0.02 0.88 6.34 -2.39 -0.02 0.87 16 43 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 44 H 0.38 19.53 7.58 -92.71 -0.70 18.83 16 45 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -69.49 386.31 -0.08 -69.56 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.21 Total: 34.06 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.55 Total: 3.51 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -5.52 Total: -130.07 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -1.66 Total: -27.58 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.26 Total: 3.59 kcal Total: -69.49 -0.08 -69.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716076614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.509 kcal (2) G-P(sol) polarization free energy of solvation -69.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds