Wall clock time and date at job start Sat Apr 11 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00052 * 2 1 4 4 C 1.50702 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.29425 * 124.80592 * 90.02258 * 4 3 2 6 6 C 1.30947 * 117.36426 * 179.68715 * 5 4 3 7 7 C 1.35660 * 114.18872 * 0.52479 * 6 5 4 8 8 C 1.46683 * 126.13390 * 179.78619 * 7 6 5 9 9 O 1.21688 * 119.99653 * 359.71399 * 8 7 6 10 10 N 1.34770 * 120.00350 * 179.71683 * 8 7 6 11 11 C 1.46502 * 120.00091 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.05698 * 326.41187 * 11 10 8 13 13 C 1.54081 * 110.01187 * 87.97343 * 11 10 8 14 14 C 1.54255 * 106.62589 * 119.38071 * 13 11 10 15 15 C 1.54895 * 104.19511 * 336.28421 * 14 13 11 16 16 C 1.54268 * 110.03292 * 204.99570 * 11 10 8 17 17 H 1.09003 * 110.48934 * 145.51151 * 16 11 10 18 18 C 1.53004 * 110.48470 * 23.00431 * 16 11 10 19 19 N 1.46504 * 109.46932 * 176.84134 * 18 16 11 20 20 C 1.36934 * 119.99567 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00537 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99798 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99987 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00079 * 24 22 20 28 28 S 1.70953 * 124.80103 * 269.99703 * 4 3 2 29 29 H 1.09003 * 109.46745 * 60.00170 * 1 2 3 30 30 H 1.08998 * 109.47316 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47371 * 300.00285 * 1 2 3 32 32 H 1.08990 * 109.47416 * 59.99703 * 3 2 1 33 33 H 1.09002 * 109.47140 * 299.99677 * 3 2 1 34 34 H 1.07993 * 122.90684 * 180.34497 * 6 5 4 35 35 H 0.97003 * 120.00136 * 359.97438 * 10 8 7 36 36 H 1.09007 * 110.11060 * 0.04253 * 13 11 10 37 37 H 1.08994 * 109.97285 * 238.65186 * 13 11 10 38 38 H 1.09003 * 110.49463 * 217.60618 * 14 13 11 39 39 H 1.09002 * 110.48773 * 94.96050 * 14 13 11 40 40 H 1.08998 * 110.75508 * 279.62258 * 15 14 13 41 41 H 1.09000 * 110.91462 * 156.33042 * 15 14 13 42 42 H 1.08998 * 109.47524 * 56.83778 * 18 16 11 43 43 H 1.08997 * 109.47093 * 296.83679 * 18 16 11 44 44 H 0.97000 * 119.99825 * 359.97438 * 19 18 16 45 45 H 0.97005 * 119.99717 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2486 1.1286 -1.0636 6 6 5.5435 1.0323 -0.8946 7 6 5.9333 0.9952 0.4043 8 6 7.3129 0.8862 0.8906 9 8 8.2334 0.8142 0.0980 10 7 7.5609 0.8656 2.2151 11 6 8.9389 0.7573 2.7007 12 1 9.5282 0.1435 2.0194 13 6 9.5647 2.1595 2.8284 14 6 9.9407 2.3414 4.3133 15 6 9.0045 1.3626 5.0649 16 6 8.9539 0.1406 4.1147 17 1 9.8370 -0.4841 4.2491 18 6 7.6816 -0.6740 4.3571 19 7 7.7529 -1.3102 5.6749 20 6 6.7196 -2.0947 6.1131 21 1 5.8519 -2.2440 5.4875 22 6 6.7873 -2.6980 7.3614 23 7 7.8449 -2.5164 8.1237 24 14 5.3774 -3.7676 7.9596 25 1 5.6931 -4.2913 9.3129 26 1 4.1333 -2.9589 8.0190 27 1 5.1855 -4.9032 7.0223 28 16 4.4857 1.1091 1.4027 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8463 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 6.2407 0.9836 -1.7179 35 1 6.8272 0.9233 2.8469 36 1 8.8435 2.9204 2.5300 37 1 10.4571 2.2269 2.2063 38 1 9.7545 3.3672 4.6313 39 1 10.9843 2.0735 4.4782 40 1 8.0124 1.7962 5.1898 41 1 9.4270 1.0840 6.0303 42 1 7.5889 -1.4407 3.5880 43 1 6.8149 -0.0141 4.3187 44 1 8.5320 -1.1758 6.2369 45 1 8.5768 -1.9607 7.8132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716076616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:02 Heat of formation + Delta-G solvation = -25.023294 kcal Electronic energy + Delta-G solvation = -26901.426742 eV Core-core repulsion = 23046.184736 eV Total energy + Delta-G solvation = -3855.242006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52190 -39.77349 -38.26159 -37.84061 -34.73579 -33.66967 -31.84958 -31.51369 -29.16304 -28.44216 -27.54265 -26.49233 -24.46061 -24.17094 -22.60756 -22.32687 -20.45500 -19.95966 -19.37490 -18.86984 -17.52551 -17.01888 -16.95162 -16.45632 -15.98013 -15.58867 -15.41059 -15.09427 -14.89720 -14.56785 -14.27483 -14.12011 -13.82281 -13.67611 -13.42079 -13.13130 -13.06606 -12.78412 -12.44254 -11.88567 -11.84214 -11.67154 -11.23015 -11.00983 -10.81213 -10.65085 -10.61424 -10.47863 -10.41055 -10.37275 -10.17844 -9.99628 -9.95242 -9.78776 -9.32281 -9.20571 -9.08183 -8.91235 -7.04291 -6.13114 -3.13144 -0.10335 0.85406 1.28917 2.14075 2.96376 3.03961 3.30073 3.49993 3.53574 3.70963 3.93003 4.45357 4.45703 4.64793 4.70159 4.71995 4.82151 4.87038 4.94475 4.94715 4.99240 5.05609 5.30861 5.33064 5.45787 5.55124 5.60029 5.64183 5.73259 5.78177 5.79395 5.92962 5.96137 6.00408 6.15821 6.36706 6.38516 6.48388 6.57444 6.60670 6.67002 7.25336 7.38343 7.77506 8.01045 8.73341 9.19570 10.05989 10.20793 11.35437 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007711 B = 0.003756 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3630.481290 B = 7452.097593 C =10532.783534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.137 3.863 4 C 0.044 3.956 5 N -0.461 5.461 6 C 0.115 3.885 7 C -0.286 4.286 8 C 0.596 3.404 9 O -0.528 6.528 10 N -0.711 5.711 11 C 0.149 3.851 12 H 0.094 0.906 13 C -0.131 4.131 14 C -0.125 4.125 15 C -0.113 4.113 16 C -0.110 4.110 17 H 0.089 0.911 18 C 0.170 3.830 19 N -0.740 5.740 20 C -0.333 4.333 21 H 0.064 0.936 22 C -0.043 4.043 23 N -0.943 5.943 24 Si 1.079 2.921 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.295 1.295 28 S 0.210 5.790 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.191 0.809 35 H 0.402 0.598 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.021 0.979 43 H 0.014 0.986 44 H 0.368 0.632 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 13.048 -15.426 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.057 3.943 4 C -0.230 4.230 5 N -0.176 5.176 6 C -0.043 4.043 7 C -0.411 4.411 8 C 0.381 3.619 9 O -0.406 6.406 10 N -0.363 5.363 11 C 0.044 3.956 12 H 0.112 0.888 13 C -0.170 4.170 14 C -0.162 4.162 15 C -0.151 4.151 16 C -0.129 4.129 17 H 0.107 0.893 18 C 0.042 3.958 19 N -0.385 5.385 20 C -0.464 4.464 21 H 0.082 0.918 22 C -0.241 4.241 23 N -0.588 5.588 24 Si 0.909 3.091 25 H -0.210 1.210 26 H -0.222 1.222 27 H -0.222 1.222 28 S 0.466 5.534 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.207 0.793 35 H 0.240 0.760 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.039 0.961 43 H 0.031 0.969 44 H 0.201 0.799 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.999 11.874 -14.239 20.609 hybrid contribution 0.746 1.106 -1.634 2.109 sum -8.254 12.980 -15.874 22.104 Atomic orbital electron populations 1.22832 0.79718 1.03568 1.00369 1.87988 1.20535 1.25902 1.95527 1.20832 0.84220 0.86432 1.02775 1.26954 1.00745 1.03546 0.91802 1.66163 1.04874 1.15354 1.31237 1.22163 0.90562 0.96031 0.95549 1.25970 0.98485 1.18523 0.98119 1.16696 0.85765 0.76640 0.82840 1.90826 1.44238 1.50352 1.55233 1.46206 1.10347 1.73769 1.06001 1.21730 0.81374 0.96666 0.95819 0.88812 1.22611 1.00826 0.96402 0.97162 1.22382 0.99838 0.99557 0.94449 1.22511 0.99696 0.94476 0.98419 1.22521 1.00834 0.97054 0.92524 0.89275 1.20506 0.92923 0.93414 0.88994 1.42325 1.21907 1.58848 1.15433 1.20017 0.98230 1.25475 1.02683 0.91817 1.25758 1.03336 1.01678 0.93307 1.70892 1.07745 1.41430 1.38775 0.83264 0.74003 0.75625 0.76183 1.20991 1.22235 1.22246 1.84166 0.96239 1.62811 1.10147 0.93576 0.88931 0.93493 0.90491 0.89737 0.79262 0.76001 0.91459 0.91146 0.91729 0.91488 0.91426 0.90915 0.96118 0.96895 0.79896 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.91 10.69 -35.23 -0.38 -4.28 16 3 C 0.14 1.17 6.51 36.01 0.23 1.40 16 4 C 0.04 0.49 7.02 -13.29 -0.09 0.40 16 5 N -0.46 -5.80 10.51 -11.50 -0.12 -5.92 16 6 C 0.12 1.44 11.09 -18.85 -0.21 1.24 16 7 C -0.29 -3.71 6.48 -37.10 -0.24 -3.95 16 8 C 0.60 8.70 7.78 -12.85 -0.10 8.60 16 9 O -0.53 -8.96 16.52 5.20 0.09 -8.88 16 10 N -0.71 -9.80 4.34 -53.92 -0.23 -10.04 16 11 C 0.15 2.06 3.13 -66.70 -0.21 1.85 16 12 H 0.09 1.38 7.56 -51.93 -0.39 0.99 16 13 C -0.13 -1.57 6.59 -25.51 -0.17 -1.74 16 14 C -0.12 -1.43 6.83 -25.07 -0.17 -1.61 16 15 C -0.11 -1.61 6.10 -24.74 -0.15 -1.76 16 16 C -0.11 -1.70 2.86 -88.96 -0.25 -1.96 16 17 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 18 C 0.17 3.30 4.80 -4.04 -0.02 3.28 16 19 N -0.74 -18.15 5.46 -59.91 -0.33 -18.47 16 20 C -0.33 -9.29 9.99 -15.06 -0.15 -9.44 16 21 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 22 C -0.04 -1.24 5.50 -17.43 -0.10 -1.34 16 23 N -0.94 -28.83 13.70 55.49 0.76 -28.07 16 24 Si 1.08 25.71 29.92 -169.99 -5.09 20.62 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 28 S 0.21 2.33 22.31 -107.50 -2.40 -0.07 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.19 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.40 5.37 5.70 -40.82 -0.23 5.14 16 36 H 0.07 0.80 7.92 -51.92 -0.41 0.39 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.25 6.34 -51.93 -0.33 -0.08 16 44 H 0.37 9.19 6.41 -40.82 -0.26 8.93 16 45 H 0.25 7.63 6.77 -40.82 -0.28 7.36 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -34.25 384.62 -9.02 -43.27 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.60 Total: 9.76 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -0.52 Total: -3.72 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.08 Total: -62.50 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.29 Total: -13.16 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.09 Total: 20.62 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.40 Total: -0.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.25 -9.02 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716076616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.244 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds