Wall clock time and date at job start Sat Apr 11 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00052 * 2 1 4 4 C 1.50702 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.29425 * 124.80592 * 90.02258 * 4 3 2 6 6 C 1.30947 * 117.36426 * 179.68715 * 5 4 3 7 7 C 1.35660 * 114.18872 * 0.52479 * 6 5 4 8 8 C 1.46683 * 126.13390 * 179.78619 * 7 6 5 9 9 O 1.21688 * 119.99653 * 359.71399 * 8 7 6 10 10 N 1.34770 * 120.00350 * 179.71683 * 8 7 6 11 11 C 1.46502 * 120.00091 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.05698 * 326.41187 * 11 10 8 13 13 C 1.54081 * 110.01187 * 87.97343 * 11 10 8 14 14 C 1.54255 * 106.62589 * 119.38071 * 13 11 10 15 15 C 1.54895 * 104.19511 * 336.28421 * 14 13 11 16 16 C 1.54268 * 110.03292 * 204.99570 * 11 10 8 17 17 H 1.09003 * 110.48934 * 145.51151 * 16 11 10 18 18 C 1.53004 * 110.48470 * 23.00431 * 16 11 10 19 19 N 1.46504 * 109.46932 * 176.84134 * 18 16 11 20 20 C 1.36934 * 119.99567 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00537 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99798 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99987 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00079 * 24 22 20 28 28 S 1.70953 * 124.80103 * 269.99703 * 4 3 2 29 29 H 1.09003 * 109.46745 * 60.00170 * 1 2 3 30 30 H 1.08998 * 109.47316 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47371 * 300.00285 * 1 2 3 32 32 H 1.08990 * 109.47416 * 59.99703 * 3 2 1 33 33 H 1.09002 * 109.47140 * 299.99677 * 3 2 1 34 34 H 1.07993 * 122.90684 * 180.34497 * 6 5 4 35 35 H 0.97003 * 120.00136 * 359.97438 * 10 8 7 36 36 H 1.09007 * 110.11060 * 0.04253 * 13 11 10 37 37 H 1.08994 * 109.97285 * 238.65186 * 13 11 10 38 38 H 1.09003 * 110.49463 * 217.60618 * 14 13 11 39 39 H 1.09002 * 110.48773 * 94.96050 * 14 13 11 40 40 H 1.08998 * 110.75508 * 279.62258 * 15 14 13 41 41 H 1.09000 * 110.91462 * 156.33042 * 15 14 13 42 42 H 1.08998 * 109.47524 * 56.83778 * 18 16 11 43 43 H 1.08997 * 109.47093 * 296.83679 * 18 16 11 44 44 H 0.97000 * 119.99825 * 359.97438 * 19 18 16 45 45 H 0.97005 * 119.99717 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2486 1.1286 -1.0636 6 6 5.5435 1.0323 -0.8946 7 6 5.9333 0.9952 0.4043 8 6 7.3129 0.8862 0.8906 9 8 8.2334 0.8142 0.0980 10 7 7.5609 0.8656 2.2151 11 6 8.9389 0.7573 2.7007 12 1 9.5282 0.1435 2.0194 13 6 9.5647 2.1595 2.8284 14 6 9.9407 2.3414 4.3133 15 6 9.0045 1.3626 5.0649 16 6 8.9539 0.1406 4.1147 17 1 9.8370 -0.4841 4.2491 18 6 7.6816 -0.6740 4.3571 19 7 7.7529 -1.3102 5.6749 20 6 6.7196 -2.0947 6.1131 21 1 5.8519 -2.2440 5.4875 22 6 6.7873 -2.6980 7.3614 23 7 7.8449 -2.5164 8.1237 24 14 5.3774 -3.7676 7.9596 25 1 5.6931 -4.2913 9.3129 26 1 4.1333 -2.9589 8.0190 27 1 5.1855 -4.9032 7.0223 28 16 4.4857 1.1091 1.4027 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8463 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 6.2407 0.9836 -1.7179 35 1 6.8272 0.9233 2.8469 36 1 8.8435 2.9204 2.5300 37 1 10.4571 2.2269 2.2063 38 1 9.7545 3.3672 4.6313 39 1 10.9843 2.0735 4.4782 40 1 8.0124 1.7962 5.1898 41 1 9.4270 1.0840 6.0303 42 1 7.5889 -1.4407 3.5880 43 1 6.8149 -0.0141 4.3187 44 1 8.5320 -1.1758 6.2369 45 1 8.5768 -1.9607 7.8132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716076616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:01 Heat of formation + Delta-G solvation = -48.934817 kcal Electronic energy + Delta-G solvation = -26902.463624 eV Core-core repulsion = 23046.184736 eV Total energy + Delta-G solvation = -3856.278887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.59800 -40.78947 -39.25151 -38.73083 -36.61870 -34.82130 -33.35142 -32.71146 -30.16267 -29.91495 -28.53178 -27.11893 -26.12168 -25.15324 -24.38809 -23.37555 -21.51985 -21.02523 -20.62633 -19.82136 -19.38306 -18.11968 -17.66915 -17.57927 -16.86451 -16.66490 -16.44868 -16.24580 -15.99318 -15.79737 -15.69326 -15.35992 -15.23857 -15.02556 -14.85339 -14.65247 -13.75863 -13.71068 -13.30772 -12.93662 -12.87117 -12.73157 -12.62046 -12.40824 -12.26872 -12.06203 -11.95878 -11.86243 -11.76421 -11.56393 -11.46381 -11.22360 -10.95951 -10.92148 -10.79912 -10.72838 -10.30400 -10.15078 -9.12232 -8.39542 -5.33854 -1.03936 -0.04839 0.36978 1.17138 1.58914 1.68354 1.84858 1.87183 1.96161 2.59013 2.70612 3.21029 3.29223 3.40125 3.56802 3.62737 3.74605 3.75605 3.99528 4.06038 4.20370 4.28964 4.30694 4.35902 4.43325 4.46459 4.50772 4.54245 4.58096 4.68097 4.73333 4.86430 4.88758 4.91538 5.01923 5.09869 5.17393 5.24264 5.36231 5.42920 5.58018 6.02131 6.19025 6.39500 6.50514 6.87583 7.08930 7.99213 8.10074 9.12615 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007711 B = 0.003756 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3630.481290 B = 7452.097593 C =10532.783534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.132 3.868 4 C 0.048 3.952 5 N -0.480 5.480 6 C 0.118 3.882 7 C -0.310 4.310 8 C 0.598 3.402 9 O -0.557 6.557 10 N -0.708 5.708 11 C 0.152 3.848 12 H 0.084 0.916 13 C -0.124 4.124 14 C -0.113 4.113 15 C -0.111 4.111 16 C -0.103 4.103 17 H 0.083 0.917 18 C 0.172 3.828 19 N -0.751 5.751 20 C -0.336 4.336 21 H 0.065 0.935 22 C -0.099 4.099 23 N -0.974 5.974 24 Si 1.124 2.876 25 H -0.292 1.292 26 H -0.274 1.274 27 H -0.281 1.281 28 S 0.231 5.769 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.197 0.803 35 H 0.404 0.596 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.006 0.994 43 H 0.024 0.976 44 H 0.363 0.637 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.017 14.179 -15.899 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.053 3.947 4 C -0.226 4.226 5 N -0.196 5.196 6 C -0.041 4.041 7 C -0.435 4.435 8 C 0.384 3.616 9 O -0.438 6.438 10 N -0.360 5.360 11 C 0.048 3.952 12 H 0.102 0.898 13 C -0.162 4.162 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.122 4.122 17 H 0.102 0.898 18 C 0.045 3.955 19 N -0.395 5.395 20 C -0.468 4.468 21 H 0.083 0.917 22 C -0.291 4.291 23 N -0.621 5.621 24 Si 0.949 3.051 25 H -0.218 1.218 26 H -0.200 1.200 27 H -0.208 1.208 28 S 0.488 5.512 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.213 0.787 35 H 0.242 0.758 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.024 0.976 43 H 0.042 0.958 44 H 0.195 0.805 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.544 13.035 -14.741 22.324 hybrid contribution 1.143 0.754 -1.557 2.074 sum -9.401 13.790 -16.298 23.327 Atomic orbital electron populations 1.23025 0.77860 1.04286 1.01829 1.87928 1.22637 1.26852 1.95842 1.21105 0.82327 0.86359 1.04909 1.27557 1.02090 1.01520 0.91406 1.66239 1.04875 1.16544 1.31922 1.22339 0.90907 0.95144 0.95715 1.25826 0.98406 1.20462 0.98799 1.16849 0.86188 0.75926 0.82633 1.90802 1.45313 1.51835 1.55803 1.46169 1.10374 1.73509 1.05948 1.21690 0.81551 0.97809 0.94190 0.89757 1.22557 1.01150 0.94832 0.97677 1.22326 0.99594 0.99698 0.93394 1.22462 1.00222 0.94475 0.97737 1.22404 0.98448 0.97101 0.94245 0.89832 1.20603 0.95461 0.93273 0.86191 1.42499 1.21066 1.58940 1.17033 1.20364 0.98789 1.25023 1.02602 0.91704 1.27136 1.04875 1.03102 0.93981 1.70995 1.08586 1.42876 1.39689 0.82676 0.72210 0.74783 0.75427 1.21846 1.19993 1.20778 1.84033 0.95119 1.62343 1.09674 0.92152 0.88687 0.91978 0.87749 0.88178 0.78666 0.75773 0.91012 0.90123 0.89913 0.90487 0.91806 0.92277 0.97572 0.95818 0.80482 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.74 10.69 -148.98 -1.59 -9.33 16 3 C 0.13 1.95 6.51 71.24 0.46 2.42 16 4 C 0.05 1.01 7.02 88.46 0.62 1.63 16 5 N -0.48 -11.63 10.51 -190.30 -2.00 -13.63 16 6 C 0.12 2.91 11.09 84.23 0.93 3.84 16 7 C -0.31 -7.91 6.48 23.88 0.15 -7.75 16 8 C 0.60 17.31 7.78 86.45 0.67 17.99 16 9 O -0.56 -18.93 16.52 -4.31 -0.07 -19.00 16 10 N -0.71 -19.15 4.34 -442.73 -1.92 -21.08 16 11 C 0.15 4.11 3.13 45.79 0.14 4.26 16 12 H 0.08 2.47 7.56 -2.39 -0.02 2.45 16 13 C -0.12 -2.72 6.59 31.39 0.21 -2.51 16 14 C -0.11 -2.35 6.83 31.67 0.22 -2.13 16 15 C -0.11 -3.06 6.10 31.88 0.19 -2.87 16 16 C -0.10 -3.15 2.86 -9.72 -0.03 -3.18 16 17 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 18 C 0.17 6.69 4.80 86.38 0.41 7.10 16 19 N -0.75 -37.20 5.46 -343.44 -1.88 -39.08 16 20 C -0.34 -18.77 9.99 84.03 0.84 -17.93 16 21 H 0.06 3.54 7.83 -2.91 -0.02 3.51 16 22 C -0.10 -5.71 5.50 84.86 0.47 -5.24 16 23 N -0.97 -60.23 13.70 21.65 0.30 -59.93 16 24 Si 1.12 51.34 29.92 68.60 2.05 53.39 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 28 S 0.23 4.85 22.31 -56.49 -1.26 3.59 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 32 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.20 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.40 10.52 5.70 -92.71 -0.53 9.99 16 36 H 0.07 1.55 7.92 -2.38 -0.02 1.53 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.80 8.00 -2.39 -0.02 1.78 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.02 0.89 6.34 -2.39 -0.02 0.88 16 44 H 0.36 18.53 6.41 -92.71 -0.59 17.94 16 45 H 0.25 15.04 6.77 -92.70 -0.63 14.41 16 Total: -1.00 -73.37 384.62 0.22 -73.16 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.04 Total: 34.77 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 6.55 Total: -2.86 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -5.50 Total: -133.72 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -1.66 Total: -28.33 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.26 Total: 3.59 kcal Total: -73.37 0.22 -73.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716076616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.220 kcal (2) G-P(sol) polarization free energy of solvation -73.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds