Wall clock time and date at job start Sat Apr 11 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 120.00101 * 2 1 4 4 H 1.48500 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47278 * 300.00307 * 3 2 1 6 6 H 1.48502 * 109.46887 * 60.00412 * 3 2 1 7 7 C 1.38957 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99842 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99411 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00503 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99797 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47399 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00308 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47436 * 184.90625 * 14 13 12 16 16 H 1.09001 * 109.99322 * 55.76878 * 15 14 13 17 17 C 1.54321 * 109.88413 * 294.67999 * 15 14 13 18 18 C 1.55154 * 102.94212 * 218.39021 * 17 15 14 19 19 C 1.54912 * 101.61551 * 35.47594 * 18 17 15 20 20 N 1.47022 * 109.88452 * 176.86633 * 15 14 13 21 21 C 1.34774 * 125.64444 * 298.41412 * 20 15 14 22 22 O 1.21582 * 120.00313 * 4.76281 * 21 20 15 23 23 C 1.47620 * 119.99827 * 184.75644 * 21 20 15 24 24 N 1.31875 * 126.45782 * 0.03120 * 23 21 20 25 25 N 1.28468 * 110.15412 * 179.97438 * 24 23 21 26 26 H 0.96999 * 124.93104 * 180.02562 * 25 24 23 27 27 C 1.35730 * 110.13263 * 0.02562 * 25 24 23 28 28 C 1.35543 * 107.11942 * 359.72622 * 27 25 24 29 29 F 1.35091 * 127.24565 * 180.29727 * 28 27 25 30 30 H 0.97003 * 119.99888 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00034 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47317 * 59.99587 * 12 10 9 33 33 H 1.08999 * 109.47237 * 299.99923 * 12 10 9 34 34 H 1.00905 * 111.00086 * 56.04765 * 13 12 10 35 35 H 1.09006 * 109.46865 * 64.90755 * 14 13 12 36 36 H 1.08997 * 109.47356 * 304.91214 * 14 13 12 37 37 H 1.08999 * 110.72591 * 100.02271 * 17 15 14 38 38 H 1.09000 * 110.71667 * 336.74510 * 17 15 14 39 39 H 1.08994 * 111.00816 * 153.57142 * 18 17 15 40 40 H 1.09003 * 111.00212 * 277.38795 * 18 17 15 41 41 H 1.09003 * 110.36315 * 81.85818 * 19 18 17 42 42 H 1.09007 * 110.36568 * 204.17191 * 19 18 17 43 43 H 1.08000 * 126.43796 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1982 -5.9795 -0.0016 14 6 1.4979 -7.2709 -0.0016 15 6 2.5182 -8.4044 0.1213 16 1 3.1306 -8.2598 1.0113 17 6 3.4162 -8.4406 -1.1333 18 6 3.6061 -9.9604 -1.3810 19 6 2.2251 -10.5203 -0.9578 20 7 1.8225 -9.6973 0.1976 21 6 0.9591 -10.0688 1.1635 22 8 0.6323 -9.2754 2.0249 23 6 0.4100 -11.4390 1.1755 24 7 0.6757 -12.3974 0.3094 25 7 0.0280 -13.4635 0.6164 26 1 0.0661 -14.2979 0.1233 27 6 -0.7173 -13.2527 1.7310 28 6 -0.4969 -11.9739 2.1224 29 9 -1.0314 -11.3419 3.1900 30 1 -0.4850 0.8401 0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6173 -4.9205 -0.8913 33 1 0.6167 -4.9209 0.8886 34 1 2.8331 -5.9128 0.7798 35 1 0.9413 -7.3823 -0.9322 36 1 0.8080 -7.3100 0.8413 37 1 4.3741 -7.9593 -0.9360 38 1 2.9149 -7.9716 -1.9799 39 1 3.8040 -10.1630 -2.4335 40 1 4.4001 -10.3626 -0.7518 41 1 1.5064 -10.4110 -1.7700 42 1 2.3132 -11.5671 -0.6665 43 1 -1.3616 -13.9704 2.2171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716784143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:11 Heat of formation + Delta-G solvation = -53.393000 kcal Electronic energy + Delta-G solvation = -28742.167138 eV Core-core repulsion = 24351.774504 eV Total energy + Delta-G solvation = -4390.392634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.74210 -43.74718 -41.18761 -40.14969 -38.64817 -36.65378 -35.80420 -33.52370 -33.27325 -32.21554 -31.63682 -31.17346 -28.26594 -26.50172 -26.01220 -24.36535 -23.25560 -22.91022 -21.83070 -21.21100 -20.45188 -19.91190 -19.48979 -18.27236 -17.97329 -17.52741 -17.26789 -17.00000 -16.92829 -16.53243 -16.19550 -16.08967 -15.93552 -15.65008 -15.34259 -15.21195 -15.10083 -14.89609 -14.24768 -14.06259 -13.74230 -13.66202 -13.50271 -13.31382 -13.21099 -12.86604 -12.73969 -12.41473 -12.37732 -12.10927 -11.85681 -11.73567 -11.57377 -11.52467 -11.34843 -10.69881 -10.39146 -10.09016 -10.03457 -9.74860 -9.43223 -8.47554 -5.96836 0.23734 0.77540 1.36463 1.41304 1.55121 1.56969 1.89930 2.01913 2.07068 2.28908 2.84257 2.99517 3.18961 3.46429 3.52517 3.59410 3.69464 3.81861 3.87523 3.92701 4.23493 4.26383 4.30320 4.39355 4.41792 4.47996 4.52276 4.67726 4.75719 4.90906 5.02333 5.04973 5.13904 5.18861 5.34508 5.40174 5.42726 5.78538 5.91147 6.03101 6.26462 6.34411 6.54566 6.57681 6.94937 7.10498 7.53270 8.07877 8.70304 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.002058 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.048142 B =13605.344827 C =14651.600176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.016 4.016 3 Si 0.997 3.003 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.441 3.559 11 O -0.619 6.619 12 C 0.065 3.935 13 N -0.663 5.663 14 C 0.057 3.943 15 C 0.140 3.860 16 H 0.064 0.936 17 C -0.110 4.110 18 C -0.125 4.125 19 C 0.097 3.903 20 N -0.597 5.597 21 C 0.602 3.398 22 O -0.570 6.570 23 C -0.054 4.054 24 N -0.225 5.225 25 N -0.341 5.341 26 H 0.479 0.521 27 C 0.010 3.990 28 C -0.013 4.013 29 F -0.123 7.123 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.343 0.657 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.893 -35.324 -2.988 35.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.216 4.216 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.099 0.901 9 N -0.210 5.210 10 C 0.229 3.771 11 O -0.505 6.505 12 C -0.068 4.068 13 N -0.295 5.295 14 C -0.073 4.073 15 C 0.036 3.964 16 H 0.082 0.918 17 C -0.148 4.148 18 C -0.163 4.163 19 C -0.024 4.024 20 N -0.330 5.330 21 C 0.389 3.611 22 O -0.448 6.448 23 C -0.214 4.214 24 N -0.064 5.064 25 N -0.061 5.061 26 H 0.331 0.669 27 C -0.136 4.136 28 C -0.042 4.042 29 F -0.102 7.102 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.128 0.872 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.126 0.874 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -0.759 -34.948 -4.078 35.193 hybrid contribution -1.280 1.179 1.949 2.613 sum -2.039 -33.769 -2.129 33.897 Atomic orbital electron populations 1.69695 1.06946 1.29294 1.50340 1.26124 0.96600 1.02622 0.96226 0.84812 0.78029 0.76786 0.78334 1.19624 1.19441 1.19644 1.19739 0.92773 0.83881 1.49861 0.90093 1.41940 1.09336 1.04765 1.64996 1.20676 0.88211 0.85906 0.82339 1.90478 1.15549 1.87884 1.56579 1.21526 0.94094 0.88502 1.02696 1.60122 1.18514 1.00138 1.50765 1.22264 0.95865 0.88231 1.00911 1.21559 0.92541 0.81839 1.00423 0.91820 1.22555 0.99345 0.97568 0.95341 1.22859 0.95876 0.93660 1.03857 1.22790 0.96506 0.96449 0.86685 1.48401 1.42833 1.16879 1.24874 1.16867 0.78340 0.85131 0.80729 1.90836 1.60901 1.53269 1.39746 1.21810 1.05670 0.95394 0.98522 1.73629 1.16938 0.93733 1.22122 1.43318 1.29919 1.12345 1.20542 0.66892 1.23289 1.01667 0.96567 0.92100 1.17718 1.02798 0.93388 0.90343 1.91483 1.84469 1.81959 1.52266 0.91273 0.77064 0.87713 0.92702 0.83916 0.90351 0.95792 0.89745 0.90117 0.87169 0.90119 0.90441 0.87436 0.73647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.56 13.05 21.67 0.28 -51.27 16 2 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 3 Si 1.00 44.21 29.55 68.60 2.03 46.24 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.33 -19.63 9.68 84.04 0.81 -18.81 16 8 H 0.08 5.05 7.16 -2.91 -0.02 5.03 16 9 N -0.57 -31.09 5.29 -306.98 -1.62 -32.71 16 10 C 0.44 22.40 7.82 87.66 0.69 23.09 16 11 O -0.62 -35.68 15.78 -3.07 -0.05 -35.73 16 12 C 0.06 2.52 6.16 85.56 0.53 3.05 16 13 N -0.66 -23.71 5.91 -517.93 -3.06 -26.77 16 14 C 0.06 1.76 5.08 86.30 0.44 2.20 16 15 C 0.14 3.63 3.04 45.34 0.14 3.77 16 16 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 17 C -0.11 -2.22 6.24 31.78 0.20 -2.02 16 18 C -0.12 -1.65 7.08 31.99 0.23 -1.42 16 19 C 0.10 1.50 6.31 86.85 0.55 2.05 16 20 N -0.60 -14.29 3.07 -791.58 -2.43 -16.72 16 21 C 0.60 17.49 7.67 86.72 0.67 18.16 16 22 O -0.57 -21.64 15.48 -3.97 -0.06 -21.71 16 23 C -0.05 -1.20 6.97 42.45 0.30 -0.90 16 24 N -0.23 -3.01 9.25 -48.15 -0.45 -3.45 16 25 N -0.34 -1.47 6.86 -56.99 -0.39 -1.86 16 26 H 0.48 -2.69 8.96 -219.99 -1.97 -4.66 16 27 C 0.01 0.07 12.06 83.47 1.01 1.07 16 28 C -0.01 -0.25 8.03 22.48 0.18 -0.07 16 29 F -0.12 -3.24 17.03 44.97 0.77 -2.47 16 30 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.40 20.55 7.90 -92.71 -0.73 19.81 16 32 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.34 12.96 8.36 -89.69 -0.75 12.21 16 35 H 0.08 2.27 8.07 -2.38 -0.02 2.25 16 36 H 0.02 0.85 6.59 -2.39 -0.02 0.84 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.72 7.80 -2.39 -0.02 1.70 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.11 1.41 5.93 -2.38 -0.01 1.40 16 43 H 0.25 -0.88 8.06 -2.91 -0.02 -0.91 16 Total: -1.00 -84.84 368.37 -1.14 -85.99 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -2.35 Total: 30.75 kcal Atomic # 6 Polarization: 23.53 SS G_CDS: 6.19 Total: 29.72 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -7.67 Total: -132.79 kcal Atomic # 8 Polarization: -57.33 SS G_CDS: -0.11 Total: -57.44 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.77 Total: -2.47 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -84.84 -1.14 -85.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716784143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.594 kcal (2) G-P(sol) polarization free energy of solvation -84.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds