Wall clock time and date at job start Sat Apr 11 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35957 * 117.00158 * 2 1 4 4 C 1.37567 * 120.82880 * 179.97438 * 3 2 1 5 5 C 1.38036 * 114.25298 * 180.02562 * 4 3 2 6 6 C 1.47116 * 127.75789 * 179.97438 * 5 4 3 7 7 O 1.21633 * 120.00108 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99949 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00383 * 185.18717 * 8 6 5 10 10 C 1.52997 * 109.47180 * 298.52785 * 9 8 6 11 11 N 1.46500 * 109.47166 * 305.45181 * 10 9 8 12 12 C 1.36940 * 119.99855 * 185.19937 * 11 10 9 13 13 H 1.07999 * 119.99828 * 354.24533 * 12 11 10 14 14 C 1.38810 * 119.99828 * 174.24547 * 12 11 10 15 15 N 1.31621 * 120.00071 * 183.67537 * 14 12 11 16 16 Si 1.86808 * 119.99929 * 3.67647 * 14 12 11 17 17 H 1.48496 * 109.46686 * 92.95682 * 16 14 12 18 18 H 1.48497 * 109.46740 * 212.95528 * 16 14 12 19 19 H 1.48494 * 109.47108 * 332.95356 * 16 14 12 20 20 C 1.53002 * 109.47345 * 178.52386 * 9 8 6 21 21 C 1.52997 * 109.47308 * 300.00321 * 20 9 8 22 22 C 1.52997 * 109.46990 * 299.99735 * 21 20 9 23 23 C 1.52997 * 109.47055 * 60.00293 * 22 21 20 24 24 C 1.52996 * 109.47278 * 299.99472 * 23 22 21 25 25 S 1.77228 * 104.47928 * 0.24046 * 5 4 3 26 26 N 1.30360 * 120.82688 * 0.02681 * 3 2 1 27 27 H 1.09005 * 109.47076 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46703 * 299.99683 * 1 2 3 29 29 H 1.09001 * 109.46699 * 60.00235 * 1 2 3 30 30 H 1.08005 * 122.87201 * 0.04574 * 4 3 2 31 31 H 0.97010 * 119.99800 * 5.18908 * 8 6 5 32 32 H 1.09001 * 109.47116 * 65.45495 * 10 9 8 33 33 H 1.09005 * 109.46888 * 185.44855 * 10 9 8 34 34 H 0.96994 * 119.99689 * 5.19650 * 11 10 9 35 35 H 0.97001 * 120.00095 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47064 * 179.97438 * 20 9 8 37 37 H 1.09004 * 109.46829 * 60.00770 * 20 9 8 38 38 H 1.09004 * 109.47135 * 179.97438 * 21 20 9 39 39 H 1.08998 * 109.47015 * 59.99637 * 21 20 9 40 40 H 1.08998 * 109.47233 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47650 * 300.00013 * 22 21 20 42 42 H 1.08998 * 109.47528 * 59.99745 * 23 22 21 43 43 H 1.09001 * 109.47332 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47572 * 300.00483 * 24 23 22 45 45 H 1.08997 * 109.47627 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3032 0.0005 5 6 3.9007 2.5968 0.0010 6 6 5.3050 3.0350 0.0022 7 8 6.1994 2.2107 0.0033 8 7 5.6006 4.3500 0.0020 9 6 6.9940 4.7876 -0.1116 10 6 7.7937 4.2580 1.0804 11 7 7.1430 4.6697 2.3267 12 6 7.7377 4.4013 3.5307 13 1 8.6379 3.8058 3.5674 14 6 7.1834 4.8946 4.7038 15 7 7.7935 4.6981 5.8534 16 14 5.5714 5.8371 4.6510 17 1 4.4423 4.8998 4.8785 18 1 5.5718 6.8780 5.7102 19 1 5.4189 6.4829 3.3226 20 6 7.0490 6.3166 -0.1238 21 6 6.2494 6.8463 -1.3158 22 6 6.8500 6.3040 -2.6142 23 6 6.7949 4.7750 -2.6021 24 6 7.5946 4.2453 -1.4102 25 16 2.4472 3.6109 0.0079 26 7 1.3522 2.3148 0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0644 0.4372 0.0002 31 1 4.8905 5.0067 0.0771 32 1 7.8359 3.1697 1.0349 33 1 8.8054 4.6625 1.0478 34 1 6.2910 5.1325 2.2990 35 1 7.4063 5.0432 6.6732 36 1 8.0859 6.6422 -0.2078 37 1 6.6212 6.7029 0.8014 38 1 6.2882 7.9356 -1.3242 39 1 5.2126 6.5206 -1.2312 40 1 6.2801 6.6809 -3.4634 41 1 7.8868 6.6295 -2.6988 42 1 5.7582 4.4494 -2.5176 43 1 7.2224 4.3887 -3.5273 44 1 8.6314 4.5709 -1.4946 45 1 7.5550 3.1561 -1.4012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717523081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:15 Heat of formation + Delta-G solvation = -14.921361 kcal Electronic energy + Delta-G solvation = -28354.701338 eV Core-core repulsion = 24499.897384 eV Total energy + Delta-G solvation = -3854.803953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.69275 -40.24238 -38.00840 -36.53157 -34.85902 -33.48707 -31.88792 -31.13120 -30.77686 -29.71433 -28.22197 -25.56332 -25.13412 -22.92295 -22.45453 -21.92144 -20.60874 -20.07467 -19.31296 -18.63162 -17.92157 -17.70159 -16.55429 -16.45914 -15.68250 -15.16706 -15.03587 -14.92924 -14.53741 -14.36196 -13.99157 -13.83236 -13.56577 -13.48299 -13.38299 -12.82903 -12.54949 -12.37253 -12.30035 -12.19861 -11.86691 -11.60313 -11.55473 -11.35460 -11.16328 -11.06326 -11.04029 -10.88981 -10.65187 -10.28387 -10.21600 -10.13869 -9.86389 -9.65453 -9.58256 -8.84403 -8.78753 -8.59156 -7.14702 -5.73307 -3.07255 0.00176 0.98227 1.33709 2.07152 2.69613 3.11301 3.24544 3.32056 3.37539 3.43987 4.40815 4.60000 4.64993 4.74901 4.79609 4.85601 4.88910 4.96824 5.07134 5.14647 5.17909 5.27459 5.42166 5.51013 5.53896 5.55073 5.58954 5.66314 5.73216 5.82036 5.86808 5.99762 6.05046 6.15739 6.17377 6.22088 6.36402 6.42091 6.45000 6.74575 6.78141 6.92880 7.51008 8.05739 8.17748 8.45861 9.25669 9.97683 10.18560 11.45469 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008673 B = 0.004929 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.742805 B = 5679.218739 C = 7581.147938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.294 6.294 3 C 0.307 3.693 4 C -0.132 4.132 5 C -0.169 4.169 6 C 0.597 3.403 7 O -0.497 6.497 8 N -0.703 5.703 9 C 0.174 3.826 10 C 0.144 3.856 11 N -0.750 5.750 12 C -0.236 4.236 13 H 0.090 0.910 14 C 0.004 3.996 15 N -0.934 5.934 16 Si 0.880 3.120 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.278 1.278 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.128 4.128 25 S 0.276 5.724 26 N -0.512 5.512 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.179 0.821 31 H 0.394 0.606 32 H 0.051 0.949 33 H 0.037 0.963 34 H 0.358 0.642 35 H 0.258 0.742 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.450 -0.987 -19.668 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.094 3.906 4 C -0.169 4.169 5 C -0.300 4.300 6 C 0.380 3.620 7 O -0.372 6.372 8 N -0.355 5.355 9 C 0.089 3.911 10 C 0.017 3.983 11 N -0.396 5.396 12 C -0.366 4.366 13 H 0.107 0.893 14 C -0.192 4.192 15 N -0.583 5.583 16 Si 0.711 3.289 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.159 4.159 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.167 4.167 25 S 0.424 5.576 26 N -0.353 5.353 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.197 0.803 31 H 0.229 0.771 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.191 0.809 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.961 -0.319 -19.508 22.885 hybrid contribution -0.950 -0.379 0.361 1.085 sum -12.911 -0.698 -19.147 23.104 Atomic orbital electron populations 1.22990 0.76718 1.03641 1.02571 1.86321 1.22992 1.22478 1.88166 1.19918 0.89835 0.85264 0.95605 1.20773 0.92296 0.98731 1.05086 1.26178 0.99518 0.97545 1.06805 1.16504 0.84932 0.83184 0.77348 1.90815 1.46019 1.52545 1.47853 1.45851 1.09709 1.05819 1.74101 1.20774 0.79901 0.94232 0.96182 1.21126 0.94227 0.99091 0.83889 1.42596 1.23920 1.71223 1.01889 1.19056 1.08247 1.26636 0.82637 0.89264 1.24643 0.98515 1.00602 0.95405 1.69703 1.39604 1.51406 0.97574 0.86616 0.85493 0.80068 0.76769 1.21268 1.21708 1.20444 1.21824 1.02249 0.93111 0.98752 1.21582 0.99281 1.00245 0.94804 1.21540 1.01104 0.95749 0.97146 1.21478 1.00487 0.95363 0.97956 1.21899 0.99456 1.02631 0.92723 1.84907 0.90477 1.12527 1.69641 1.76434 1.26528 1.00960 1.31402 0.87960 0.92041 0.92155 0.80333 0.77096 0.93112 0.94487 0.80943 0.93179 0.89789 0.90515 0.91703 0.92411 0.92398 0.91847 0.92373 0.92185 0.90718 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.43 101.05 1.05 1.36 16 2 O -0.29 -3.47 10.51 -19.61 -0.21 -3.67 16 3 C 0.31 4.02 7.36 -18.42 -0.14 3.88 16 4 C -0.13 -1.77 10.09 -39.90 -0.40 -2.17 16 5 C -0.17 -2.35 6.74 -36.06 -0.24 -2.59 16 6 C 0.60 9.39 7.21 -12.66 -0.09 9.30 16 7 O -0.50 -9.19 13.25 5.25 0.07 -9.12 16 8 N -0.70 -10.02 3.36 -48.77 -0.16 -10.18 16 9 C 0.17 2.55 0.32 -131.82 -0.04 2.51 16 10 C 0.14 2.83 4.88 -4.04 -0.02 2.81 16 11 N -0.75 -17.64 4.92 -59.91 -0.29 -17.93 16 12 C -0.24 -6.74 10.47 -15.06 -0.16 -6.90 16 13 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 14 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 15 N -0.93 -29.68 13.97 55.49 0.78 -28.91 16 16 Si 0.88 22.10 27.85 -169.99 -4.73 17.37 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 19 H -0.28 -6.33 6.36 56.52 0.36 -5.97 16 20 C -0.12 -1.58 4.65 -26.73 -0.12 -1.71 16 21 C -0.12 -1.22 5.75 -26.73 -0.15 -1.38 16 22 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 23 C -0.12 -1.20 5.76 -26.73 -0.15 -1.35 16 24 C -0.13 -1.64 4.50 -26.73 -0.12 -1.76 16 25 S 0.28 3.36 23.28 -107.50 -2.50 0.86 16 26 N -0.51 -6.75 11.03 29.19 0.32 -6.42 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.18 2.24 8.06 -52.48 -0.42 1.82 16 31 H 0.39 4.91 6.74 -40.82 -0.28 4.64 16 32 H 0.05 1.11 6.28 -51.93 -0.33 0.78 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.36 8.10 4.42 -40.82 -0.18 7.91 16 35 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.15 7.33 -51.93 -0.38 0.77 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.55 6.89 -51.93 -0.36 0.19 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.63 7.60 -51.93 -0.39 0.23 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.08 1.24 6.24 -51.93 -0.32 0.92 16 LS Contribution 369.65 15.07 5.57 5.57 Total: -1.00 -33.62 369.65 -8.50 -42.12 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.49 Total: 9.55 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.84 Total: 0.77 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: 0.64 Total: -63.44 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.14 Total: -12.79 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.73 Total: 17.37 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.50 Total: 0.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.62 -8.50 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717523081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.198 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds