Wall clock time and date at job start Sat Apr 11 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35957 * 117.00158 * 2 1 4 4 C 1.37567 * 120.82880 * 179.97438 * 3 2 1 5 5 C 1.38036 * 114.25298 * 180.02562 * 4 3 2 6 6 C 1.47116 * 127.75789 * 179.97438 * 5 4 3 7 7 O 1.21633 * 120.00108 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99949 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00383 * 185.18717 * 8 6 5 10 10 C 1.52997 * 109.47180 * 298.52785 * 9 8 6 11 11 N 1.46500 * 109.47166 * 305.45181 * 10 9 8 12 12 C 1.36940 * 119.99855 * 185.19937 * 11 10 9 13 13 H 1.07999 * 119.99828 * 354.24533 * 12 11 10 14 14 C 1.38810 * 119.99828 * 174.24547 * 12 11 10 15 15 N 1.31621 * 120.00071 * 183.67537 * 14 12 11 16 16 Si 1.86808 * 119.99929 * 3.67647 * 14 12 11 17 17 H 1.48496 * 109.46686 * 92.95682 * 16 14 12 18 18 H 1.48497 * 109.46740 * 212.95528 * 16 14 12 19 19 H 1.48494 * 109.47108 * 332.95356 * 16 14 12 20 20 C 1.53002 * 109.47345 * 178.52386 * 9 8 6 21 21 C 1.52997 * 109.47308 * 300.00321 * 20 9 8 22 22 C 1.52997 * 109.46990 * 299.99735 * 21 20 9 23 23 C 1.52997 * 109.47055 * 60.00293 * 22 21 20 24 24 C 1.52996 * 109.47278 * 299.99472 * 23 22 21 25 25 S 1.77228 * 104.47928 * 0.24046 * 5 4 3 26 26 N 1.30360 * 120.82688 * 0.02681 * 3 2 1 27 27 H 1.09005 * 109.47076 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46703 * 299.99683 * 1 2 3 29 29 H 1.09001 * 109.46699 * 60.00235 * 1 2 3 30 30 H 1.08005 * 122.87201 * 0.04574 * 4 3 2 31 31 H 0.97010 * 119.99800 * 5.18908 * 8 6 5 32 32 H 1.09001 * 109.47116 * 65.45495 * 10 9 8 33 33 H 1.09005 * 109.46888 * 185.44855 * 10 9 8 34 34 H 0.96994 * 119.99689 * 5.19650 * 11 10 9 35 35 H 0.97001 * 120.00095 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47064 * 179.97438 * 20 9 8 37 37 H 1.09004 * 109.46829 * 60.00770 * 20 9 8 38 38 H 1.09004 * 109.47135 * 179.97438 * 21 20 9 39 39 H 1.08998 * 109.47015 * 59.99637 * 21 20 9 40 40 H 1.08998 * 109.47233 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47650 * 300.00013 * 22 21 20 42 42 H 1.08998 * 109.47528 * 59.99745 * 23 22 21 43 43 H 1.09001 * 109.47332 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47572 * 300.00483 * 24 23 22 45 45 H 1.08997 * 109.47627 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3032 0.0005 5 6 3.9007 2.5968 0.0010 6 6 5.3050 3.0350 0.0022 7 8 6.1994 2.2107 0.0033 8 7 5.6006 4.3500 0.0020 9 6 6.9940 4.7876 -0.1116 10 6 7.7937 4.2580 1.0804 11 7 7.1430 4.6697 2.3267 12 6 7.7377 4.4013 3.5307 13 1 8.6379 3.8058 3.5674 14 6 7.1834 4.8946 4.7038 15 7 7.7935 4.6981 5.8534 16 14 5.5714 5.8371 4.6510 17 1 4.4423 4.8998 4.8785 18 1 5.5718 6.8780 5.7102 19 1 5.4189 6.4829 3.3226 20 6 7.0490 6.3166 -0.1238 21 6 6.2494 6.8463 -1.3158 22 6 6.8500 6.3040 -2.6142 23 6 6.7949 4.7750 -2.6021 24 6 7.5946 4.2453 -1.4102 25 16 2.4472 3.6109 0.0079 26 7 1.3522 2.3148 0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0644 0.4372 0.0002 31 1 4.8905 5.0067 0.0771 32 1 7.8359 3.1697 1.0349 33 1 8.8054 4.6625 1.0478 34 1 6.2910 5.1325 2.2990 35 1 7.4063 5.0432 6.6732 36 1 8.0859 6.6422 -0.2078 37 1 6.6212 6.7029 0.8014 38 1 6.2882 7.9356 -1.3242 39 1 5.2126 6.5206 -1.2312 40 1 6.2801 6.6809 -3.4634 41 1 7.8868 6.6295 -2.6988 42 1 5.7582 4.4494 -2.5176 43 1 7.2224 4.3887 -3.5273 44 1 8.6314 4.5709 -1.4946 45 1 7.5550 3.1561 -1.4012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717523081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:14 Heat of formation + Delta-G solvation = -39.446568 kcal Electronic energy + Delta-G solvation = -28355.764831 eV Core-core repulsion = 24499.897384 eV Total energy + Delta-G solvation = -3855.867446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.85821 -41.20433 -39.13135 -37.49613 -36.54350 -34.85565 -33.57159 -32.51519 -31.71786 -31.08716 -29.00487 -27.19646 -26.14476 -24.39508 -23.59938 -23.10492 -21.83605 -21.15674 -20.37928 -19.88809 -19.61068 -18.85556 -17.56664 -17.34982 -16.92077 -16.52450 -16.42975 -16.11289 -15.88749 -15.54795 -15.22069 -14.96270 -14.74547 -14.68546 -14.49316 -14.39612 -13.98285 -13.76631 -13.28122 -13.10542 -12.99310 -12.95708 -12.76349 -12.67511 -12.55878 -12.16976 -12.11010 -12.05791 -11.99580 -11.85386 -11.48887 -11.35813 -11.16850 -11.05373 -10.90596 -10.66939 -10.09241 -9.52757 -9.24432 -8.02579 -5.35150 -1.06423 -0.02779 0.34984 1.03718 1.30588 1.37839 1.44828 1.66666 1.93377 2.24672 2.46699 3.26833 3.37525 3.53972 3.68376 3.81630 3.85842 3.96105 4.06161 4.23723 4.26920 4.32682 4.37952 4.46395 4.51610 4.59350 4.61164 4.68476 4.73725 4.84120 4.88460 4.92602 5.09721 5.16849 5.20828 5.26138 5.29701 5.36742 5.43841 5.51188 5.61780 5.76786 5.89828 6.20351 6.34925 6.99503 7.08268 7.83097 8.05876 9.19381 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008673 B = 0.004929 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.742805 B = 5679.218739 C = 7581.147938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.304 3.696 4 C -0.135 4.135 5 C -0.188 4.188 6 C 0.596 3.404 7 O -0.534 6.534 8 N -0.696 5.696 9 C 0.182 3.818 10 C 0.142 3.858 11 N -0.745 5.745 12 C -0.231 4.231 13 H 0.048 0.952 14 C -0.063 4.063 15 N -0.985 5.985 16 Si 0.948 3.052 17 H -0.284 1.284 18 H -0.292 1.292 19 H -0.238 1.238 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.113 4.113 23 C -0.110 4.110 24 C -0.124 4.124 25 S 0.321 5.679 26 N -0.521 5.521 27 H 0.131 0.869 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.179 0.821 31 H 0.406 0.594 32 H 0.025 0.975 33 H 0.034 0.966 34 H 0.365 0.635 35 H 0.257 0.743 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.023 0.876 -22.049 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.209 6.209 3 C 0.091 3.909 4 C -0.173 4.173 5 C -0.320 4.320 6 C 0.380 3.620 7 O -0.411 6.411 8 N -0.348 5.348 9 C 0.096 3.904 10 C 0.015 3.985 11 N -0.391 5.391 12 C -0.362 4.362 13 H 0.066 0.934 14 C -0.254 4.254 15 N -0.635 5.635 16 Si 0.774 3.226 17 H -0.211 1.211 18 H -0.219 1.219 19 H -0.162 1.162 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.163 4.163 25 S 0.470 5.530 26 N -0.363 5.363 27 H 0.149 0.851 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.197 0.803 31 H 0.242 0.758 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.199 0.801 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.560 1.566 -21.952 26.389 hybrid contribution -0.093 -1.079 1.111 1.552 sum -14.653 0.487 -20.841 25.482 Atomic orbital electron populations 1.23265 0.74931 1.05656 1.02587 1.86322 1.24783 1.21897 1.87916 1.19884 0.89694 0.85711 0.95618 1.20884 0.92768 0.98811 1.04796 1.26007 0.99391 0.98520 1.08085 1.16756 0.85395 0.83256 0.76607 1.90804 1.47334 1.53478 1.49495 1.45801 1.09851 1.05701 1.73445 1.20654 0.79520 0.95595 0.94586 1.21206 0.95008 0.97689 0.84570 1.42470 1.24145 1.71031 1.01492 1.18985 1.06970 1.25361 0.84875 0.93394 1.25496 1.02810 1.02378 0.94733 1.69901 1.41890 1.53295 0.98458 0.85510 0.79885 0.78520 0.78650 1.21098 1.21888 1.16199 1.21812 1.03067 0.91180 0.99627 1.21580 0.99109 1.01202 0.93503 1.21527 1.01815 0.94360 0.97381 1.21450 0.99801 0.96511 0.96962 1.21844 1.00335 1.01240 0.92836 1.84664 0.88556 1.11205 1.68571 1.76374 1.27084 1.01380 1.31510 0.85055 0.92365 0.91707 0.80329 0.75758 0.95718 0.94847 0.80074 0.93410 0.89528 0.92200 0.90000 0.91539 0.90374 0.91329 0.92614 0.90979 0.90006 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.43 113.37 1.18 1.63 16 2 O -0.30 -6.77 10.51 -93.07 -0.98 -7.75 16 3 C 0.30 7.58 7.36 84.75 0.62 8.21 16 4 C -0.13 -3.55 10.09 22.06 0.22 -3.33 16 5 C -0.19 -5.07 6.74 24.55 0.17 -4.90 16 6 C 0.60 18.54 7.21 86.57 0.62 19.16 16 7 O -0.53 -20.29 13.25 -4.13 -0.05 -20.35 16 8 N -0.70 -18.88 3.36 -426.44 -1.43 -20.31 16 9 C 0.18 5.16 0.32 3.61 0.00 5.16 16 10 C 0.14 5.70 4.88 86.38 0.42 6.12 16 11 N -0.75 -35.17 4.92 -343.45 -1.69 -36.86 16 12 C -0.23 -13.59 10.47 84.03 0.88 -12.71 16 13 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 14 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 15 N -0.98 -64.44 13.97 21.65 0.30 -64.14 16 16 Si 0.95 45.16 27.85 68.60 1.91 47.07 16 17 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 18 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 19 H -0.24 -9.66 6.36 99.48 0.63 -9.03 16 20 C -0.12 -2.82 4.65 30.59 0.14 -2.67 16 21 C -0.12 -1.89 5.75 30.59 0.18 -1.72 16 22 C -0.11 -1.66 5.92 30.59 0.18 -1.48 16 23 C -0.11 -2.00 5.76 30.59 0.18 -1.82 16 24 C -0.12 -3.04 4.50 30.60 0.14 -2.91 16 25 S 0.32 7.07 23.28 -56.49 -1.32 5.75 16 26 N -0.52 -12.74 11.03 -175.22 -1.93 -14.67 16 27 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.06 0.91 8.12 -2.39 -0.02 0.90 16 29 H 0.06 0.91 8.13 -2.39 -0.02 0.90 16 30 H 0.18 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.41 9.05 6.74 -92.70 -0.62 8.42 16 32 H 0.02 1.14 6.28 -2.39 -0.01 1.12 16 33 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.37 15.99 4.42 -92.71 -0.41 15.58 16 35 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 36 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 1.63 7.33 -2.38 -0.02 1.62 16 38 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.07 0.98 6.89 -2.39 -0.02 0.97 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 1.06 7.60 -2.39 -0.02 1.04 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.06 1.84 6.24 -2.39 -0.01 1.83 16 Total: -1.00 -75.44 369.65 0.13 -75.31 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.08 Total: 30.52 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.40 Total: 5.42 kcal Atomic # 7 Polarization: -131.23 SS G_CDS: -4.75 Total: -135.98 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -1.03 Total: -28.10 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.91 Total: 47.07 kcal Atomic # 16 Polarization: 7.07 SS G_CDS: -1.32 Total: 5.75 kcal Total: -75.44 0.13 -75.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717523081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.868 kcal (2) G-P(sol) polarization free energy of solvation -75.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds