Wall clock time and date at job start Sat Apr 11 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99666 * 2 1 4 4 C 1.50702 * 109.46975 * 180.02562 * 3 2 1 5 5 N 1.30944 * 122.90429 * 270.00619 * 4 3 2 6 6 C 1.29427 * 117.36297 * 180.02562 * 5 4 3 7 7 S 1.70956 * 110.39151 * 359.71927 * 6 5 4 8 8 C 1.35665 * 122.90540 * 90.00241 * 4 3 2 9 9 C 1.46684 * 126.12752 * 359.97438 * 8 4 3 10 10 O 1.21681 * 120.00149 * 0.02562 * 9 8 4 11 11 N 1.34775 * 119.99764 * 179.97438 * 9 8 4 12 12 C 1.46502 * 120.00117 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.43035 * 32.46165 * 12 11 9 14 14 C 1.54890 * 110.48904 * 269.77993 * 12 11 9 15 15 C 1.54888 * 102.74845 * 203.37812 * 14 12 11 16 16 C 1.54263 * 104.19606 * 37.93987 * 15 14 12 17 17 H 1.09003 * 110.07272 * 95.69767 * 16 15 14 18 18 C 1.53001 * 110.03243 * 217.10385 * 16 15 14 19 19 N 1.46490 * 109.47264 * 292.16632 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 C 1.53877 * 106.59888 * 336.39198 * 16 15 14 29 29 H 1.08996 * 109.47463 * 299.99331 * 1 2 3 30 30 H 1.09005 * 109.47388 * 59.99795 * 1 2 3 31 31 H 1.09007 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46873 * 60.00397 * 3 2 1 33 33 H 1.08992 * 109.47324 * 300.00034 * 3 2 1 34 34 H 1.07999 * 124.80611 * 180.02562 * 6 5 4 35 35 H 0.96997 * 120.00287 * 0.02562 * 11 9 8 36 36 H 1.09003 * 110.75396 * 321.69294 * 14 12 11 37 37 H 1.08997 * 110.75901 * 84.87573 * 14 12 11 38 38 H 1.09000 * 110.48442 * 279.26009 * 15 14 12 39 39 H 1.09000 * 110.48713 * 156.61850 * 15 14 12 40 40 H 1.09003 * 109.46836 * 172.16340 * 18 16 15 41 41 H 1.08999 * 109.47071 * 52.17379 * 18 16 15 42 42 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 43 43 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 44 44 H 1.08996 * 110.03408 * 119.28815 * 28 16 15 45 45 H 1.09004 * 110.02872 * 240.66372 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 7 4.2220 1.1301 1.0984 6 6 5.5062 1.0290 0.9729 7 16 5.9417 0.9876 -0.6797 8 6 4.2467 1.1286 -1.1399 9 6 3.7228 1.1699 -2.5094 10 8 2.5248 1.2647 -2.7000 11 7 4.5686 1.1037 -3.5567 12 6 4.0455 1.1443 -4.9245 13 1 3.1500 1.7640 -4.9712 14 6 3.7442 -0.2876 -5.4324 15 6 3.8080 -0.1249 -6.9714 16 6 4.9683 0.8659 -7.1992 17 1 5.8889 0.3218 -7.4101 18 6 4.6362 1.8035 -8.3618 19 7 4.6129 1.0414 -9.6126 20 6 4.3351 1.6740 -10.7948 21 1 4.1336 2.7349 -10.8052 22 6 4.3126 0.9517 -11.9800 23 7 4.5577 -0.3415 -11.9673 24 14 3.9344 1.8149 -13.5929 25 1 3.9709 0.8288 -14.7026 26 1 2.5839 2.4286 -13.5210 27 1 4.9468 2.8734 -13.8372 28 6 5.1193 1.6728 -5.8977 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6885 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 6.2035 0.9732 1.7957 35 1 5.5237 1.0284 -3.4048 36 1 4.5041 -0.9882 -5.0862 37 1 2.7519 -0.6090 -5.1160 38 1 2.8734 0.2885 -7.3504 39 1 4.0240 -1.0813 -7.4476 40 1 5.3937 2.5847 -8.4263 41 1 3.6595 2.2576 -8.1947 42 1 4.7935 0.0884 -9.6033 43 1 4.7544 -0.7896 -11.1299 44 1 6.1128 1.5197 -5.4766 45 1 4.9568 2.7326 -6.0945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725661230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:32 Heat of formation + Delta-G solvation = -27.953847 kcal Electronic energy + Delta-G solvation = -26557.026468 eV Core-core repulsion = 22701.657383 eV Total energy + Delta-G solvation = -3855.369084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87633 -39.73653 -38.09967 -37.74772 -35.08965 -33.71947 -31.87962 -31.03549 -28.94525 -28.73974 -27.34311 -26.37784 -24.93784 -24.16158 -22.41614 -22.39025 -20.69402 -19.99662 -19.41738 -19.07519 -17.30189 -17.17471 -16.82483 -16.62929 -15.85527 -15.58128 -15.38040 -15.23766 -15.20445 -14.52214 -14.24298 -14.02046 -13.78543 -13.59471 -13.32408 -13.26964 -13.17357 -12.63275 -12.26873 -11.93527 -11.86808 -11.63661 -11.43780 -11.02965 -10.77884 -10.74659 -10.55863 -10.51772 -10.38645 -10.21547 -10.17061 -10.04835 -9.95918 -9.76622 -9.52295 -9.23970 -9.13087 -8.85302 -6.97346 -6.08369 -3.07362 -0.26857 0.65979 1.03199 1.91968 2.73423 2.78920 3.46927 3.52818 3.56611 3.74002 3.94424 4.36735 4.49405 4.58517 4.62594 4.71033 4.75620 4.94608 5.01833 5.13517 5.21462 5.29174 5.39897 5.46772 5.47338 5.48411 5.52883 5.57399 5.64821 5.76312 5.81851 6.00323 6.03953 6.09477 6.20046 6.34704 6.43551 6.54509 6.72417 6.84963 6.85093 7.04071 7.17205 7.82297 7.82963 8.78342 9.26253 10.12598 10.27913 11.40432 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020989 B = 0.002045 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.695080 B =13690.045348 C =14532.842281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.128 3.872 4 C 0.140 3.860 5 N -0.463 5.463 6 C 0.035 3.965 7 S 0.173 5.827 8 C -0.270 4.270 9 C 0.595 3.405 10 O -0.514 6.514 11 N -0.714 5.714 12 C 0.140 3.860 13 H 0.100 0.900 14 C -0.133 4.133 15 C -0.111 4.111 16 C -0.097 4.097 17 H 0.073 0.927 18 C 0.165 3.835 19 N -0.743 5.743 20 C -0.330 4.330 21 H 0.063 0.937 22 C -0.047 4.047 23 N -0.945 5.945 24 Si 1.080 2.920 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.296 1.296 28 C -0.121 4.121 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.209 0.791 35 H 0.396 0.604 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.017 0.983 41 H 0.021 0.979 42 H 0.367 0.633 43 H 0.254 0.746 44 H 0.066 0.934 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.787 2.760 29.764 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.049 3.951 4 C 0.001 3.999 5 N -0.176 5.176 6 C -0.261 4.261 7 S 0.428 5.572 8 C -0.394 4.394 9 C 0.380 3.620 10 O -0.391 6.391 11 N -0.365 5.365 12 C 0.037 3.963 13 H 0.118 0.882 14 C -0.172 4.172 15 C -0.149 4.149 16 C -0.116 4.116 17 H 0.092 0.908 18 C 0.037 3.963 19 N -0.389 5.389 20 C -0.461 4.461 21 H 0.081 0.919 22 C -0.244 4.244 23 N -0.591 5.591 24 Si 0.911 3.089 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.223 1.223 28 C -0.159 4.159 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.226 0.774 35 H 0.231 0.769 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.200 0.800 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.604 2.631 27.985 28.154 hybrid contribution -0.118 0.211 1.984 1.999 sum 1.486 2.842 29.969 30.140 Atomic orbital electron populations 1.22740 0.80249 1.02919 1.00216 1.87882 1.20156 1.26300 1.95529 1.21034 0.85013 0.86365 1.02699 1.20271 0.97286 0.97098 0.85239 1.66040 1.04947 1.15523 1.31084 1.28736 0.95172 1.01801 1.00372 1.83976 1.05225 1.64345 1.03662 1.25679 0.96726 1.17725 0.99309 1.16645 0.86274 0.76798 0.82297 1.90810 1.14299 1.49280 1.84710 1.46039 1.09679 1.74552 1.06224 1.22037 0.97944 0.97846 0.78507 0.88203 1.22893 1.01924 0.95825 0.96528 1.22321 0.99197 0.99615 0.93762 1.21907 0.98997 0.96642 0.94094 0.90820 1.20726 0.97531 0.92921 0.85088 1.42355 1.86393 1.07637 1.02492 1.20036 1.45003 0.94229 0.86870 0.91861 1.25776 1.00826 0.96693 1.01132 1.70885 1.50967 1.08752 1.28468 0.83240 0.75737 0.74328 0.75601 1.21041 1.22283 1.22310 1.22404 0.97782 1.00841 0.94921 0.94098 0.93422 0.89493 0.91771 0.88834 0.77438 0.76916 0.91482 0.91191 0.90773 0.91332 0.96470 0.96139 0.80005 0.93448 0.91485 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.77 10.69 -35.23 -0.38 -5.14 16 3 C 0.13 1.45 5.75 36.01 0.21 1.65 16 4 C 0.14 1.58 6.42 -83.89 -0.54 1.04 16 5 N -0.46 -4.71 10.50 -11.53 -0.12 -4.83 16 6 C 0.03 0.23 12.22 51.75 0.63 0.86 16 7 S 0.17 1.11 22.35 -107.50 -2.40 -1.29 16 8 C -0.27 -2.83 6.48 -37.09 -0.24 -3.07 16 9 C 0.60 7.25 7.78 -12.85 -0.10 7.15 16 10 O -0.51 -7.73 13.92 5.21 0.07 -7.66 16 11 N -0.71 -7.42 5.15 -53.51 -0.28 -7.70 16 12 C 0.14 1.68 3.22 -66.27 -0.21 1.47 16 13 H 0.10 1.35 7.55 -51.93 -0.39 0.96 16 14 C -0.13 -1.70 6.58 -24.74 -0.16 -1.86 16 15 C -0.11 -1.68 6.08 -25.07 -0.15 -1.83 16 16 C -0.10 -1.49 2.96 -89.50 -0.26 -1.76 16 17 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 18 C 0.16 3.30 5.31 -4.05 -0.02 3.28 16 19 N -0.74 -18.83 5.45 -59.91 -0.33 -19.16 16 20 C -0.33 -9.47 9.99 -15.06 -0.15 -9.62 16 21 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.05 -1.38 5.50 -17.43 -0.10 -1.48 16 23 N -0.94 -29.49 13.70 55.49 0.76 -28.73 16 24 Si 1.08 26.19 29.92 -169.99 -5.09 21.11 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.30 -6.84 7.11 56.52 0.40 -6.43 16 28 C -0.12 -1.44 6.19 -25.62 -0.16 -1.60 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.12 6.01 -51.93 -0.31 0.81 16 34 H 0.21 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.40 3.17 7.55 -40.82 -0.31 2.86 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.25 7.76 -51.93 -0.40 0.85 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 42 H 0.37 9.44 6.38 -40.82 -0.26 9.18 16 43 H 0.25 7.79 6.77 -40.82 -0.28 7.51 16 44 H 0.07 0.67 7.73 -51.93 -0.40 0.26 16 45 H 0.08 0.91 7.67 -51.93 -0.40 0.51 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -35.74 383.07 -8.73 -44.47 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.60 Total: 7.48 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -0.15 Total: -4.33 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.04 Total: -60.41 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.30 Total: -12.80 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -5.09 Total: 21.11 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.40 Total: -1.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.74 -8.73 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725661230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.520 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds