Wall clock time and date at job start Sat Apr 11 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 110.27329 * 2 1 4 4 C 1.34777 * 119.99724 * 300.70085 * 3 2 1 5 5 O 1.21583 * 120.00271 * 359.97438 * 4 3 2 6 6 C 1.47615 * 119.99726 * 179.72725 * 4 3 2 7 7 N 1.31870 * 126.46091 * 0.29206 * 6 4 3 8 8 N 1.28465 * 110.16035 * 180.02562 * 7 6 4 9 9 H 0.97001 * 124.93953 * 179.97438 * 8 7 6 10 10 C 1.35729 * 110.12920 * 0.02562 * 8 7 6 11 11 C 1.35541 * 107.11828 * 359.72350 * 10 8 7 12 12 F 1.35102 * 127.24725 * 180.25724 * 11 10 8 13 13 C 1.54593 * 110.30800 * 237.91190 * 2 1 3 14 14 C 1.55198 * 102.79814 * 219.05011 * 13 2 1 15 15 N 1.48538 * 103.23869 * 37.43385 * 14 13 2 16 16 C 1.46902 * 111.00020 * 200.25714 * 15 14 13 17 17 C 1.50701 * 109.47028 * 287.39765 * 16 15 14 18 18 O 1.21293 * 119.99917 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99701 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99746 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99738 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99997 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99735 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99888 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47153 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47140 * 119.99948 * 24 22 20 27 27 H 1.48498 * 109.46837 * 239.99243 * 24 22 20 28 28 C 1.47900 * 105.81747 * 320.76929 * 15 14 13 29 29 H 1.09000 * 109.47061 * 59.30160 * 1 2 3 30 30 H 1.09002 * 109.47124 * 179.29981 * 1 2 3 31 31 H 1.08997 * 109.47748 * 299.29935 * 1 2 3 32 32 H 0.96990 * 119.99784 * 120.69656 * 3 2 1 33 33 H 1.08000 * 126.44449 * 180.02562 * 10 8 7 34 34 H 1.09001 * 110.72659 * 337.38234 * 13 2 1 35 35 H 1.08990 * 110.72544 * 100.67127 * 13 2 1 36 36 H 1.09001 * 110.68419 * 278.98545 * 14 13 2 37 37 H 1.09000 * 110.78944 * 155.93023 * 14 13 2 38 38 H 1.09003 * 109.47192 * 47.39639 * 16 15 14 39 39 H 1.08998 * 109.47129 * 167.39579 * 16 15 14 40 40 H 0.96999 * 120.00191 * 359.97438 * 19 17 16 41 41 H 0.97007 * 119.99729 * 180.02562 * 23 22 20 42 42 H 1.08999 * 109.92247 * 265.97659 * 28 15 14 43 43 H 1.09004 * 109.91531 * 144.68509 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0377 1.3743 0.0000 4 6 1.7121 2.2129 -1.0036 5 8 0.9976 1.8287 -1.9092 6 6 2.2187 3.5994 -1.0005 7 7 2.9979 4.1470 -0.0884 8 7 3.2471 5.3694 -0.3951 9 1 3.7985 5.9720 0.1280 10 6 2.6259 5.6954 -1.5570 11 6 1.9634 4.5908 -1.9788 12 9 1.2144 4.4632 -3.0960 13 6 2.0666 -0.7702 -1.2283 14 6 3.2882 -1.5326 -0.6494 15 7 2.8333 -1.9216 0.7100 16 6 3.9768 -2.2223 1.5818 17 6 4.5876 -3.5379 1.1731 18 8 4.1170 -4.1632 0.2464 19 7 5.6569 -4.0197 1.8373 20 6 6.2130 -5.2163 1.4652 21 1 5.7939 -5.7730 0.6400 22 6 7.3150 -5.7132 2.1503 23 7 7.8245 -5.0359 3.1545 24 14 8.0722 -7.3440 1.6436 25 1 7.3180 -7.9039 0.4935 26 1 9.4885 -7.1314 1.2511 27 1 8.0119 -8.2932 2.7840 28 6 2.0645 -0.7672 1.2236 29 1 -0.3633 0.5246 -0.8837 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3634 0.5029 0.8961 32 1 2.6079 1.6806 0.7223 33 1 2.6578 6.6534 -2.0547 34 1 1.3179 -1.4681 -1.6033 35 1 2.3775 -0.0788 -2.0115 36 1 4.1581 -0.8784 -0.5915 37 1 3.5119 -2.4159 -1.2476 38 1 4.7216 -1.4318 1.4899 39 1 3.6386 -2.2844 2.6162 40 1 6.0335 -3.5194 2.5782 41 1 8.5941 -5.3827 3.6325 42 1 2.7147 -0.1202 1.8125 43 1 1.2326 -1.1174 1.8347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733409357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:00 Heat of formation + Delta-G solvation = -21.310262 kcal Electronic energy + Delta-G solvation = -29155.127416 eV Core-core repulsion = 24766.125994 eV Total energy + Delta-G solvation = -4389.001422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.98013 -43.15096 -40.44480 -38.67070 -37.50887 -34.63338 -33.77718 -32.68847 -31.38286 -31.13990 -30.83437 -29.54462 -27.50163 -25.50386 -24.72764 -23.75441 -22.41893 -21.59624 -20.67229 -19.61346 -19.32874 -19.10094 -17.85336 -17.55150 -16.82730 -16.40748 -16.25502 -16.00442 -15.42447 -15.20128 -14.89540 -14.85923 -14.58354 -14.54144 -14.29209 -13.91302 -13.49751 -13.30057 -13.12275 -12.92493 -12.52661 -12.33885 -12.07995 -11.74286 -11.53307 -11.46682 -11.26097 -11.21573 -11.00665 -10.85911 -10.70617 -10.32198 -10.19824 -10.10343 -10.06816 -9.47725 -9.45032 -9.17332 -8.46231 -7.97893 -7.90939 -6.39130 -3.79471 0.97949 1.35060 2.12271 2.79560 3.03130 3.18236 3.28584 3.36174 3.69702 3.94333 4.05718 4.10496 4.30711 4.31925 4.41472 4.64386 4.77078 4.85893 4.91976 5.16756 5.26854 5.36896 5.48470 5.53674 5.68832 5.75072 5.83390 5.83713 5.86098 5.96485 6.04940 6.22204 6.23937 6.28292 6.31822 6.46292 6.49392 7.02048 7.16658 7.21410 7.37580 7.58188 7.98779 8.09714 8.65362 9.21635 9.57975 10.10284 10.78936 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.002187 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.146485 B =12797.823631 C =13421.261630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 N -0.704 5.704 4 C 0.603 3.397 5 O -0.515 6.515 6 C -0.029 4.029 7 N -0.232 5.232 8 N -0.368 5.368 9 H 0.457 0.543 10 C -0.038 4.038 11 C 0.038 3.962 12 F -0.099 7.099 13 C -0.121 4.121 14 C 0.040 3.960 15 N -0.487 5.487 16 C 0.036 3.964 17 C 0.447 3.553 18 O -0.575 6.575 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.904 5.904 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.036 3.964 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.404 0.596 33 H 0.199 0.801 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.391 0.609 41 H 0.270 0.730 42 H 0.048 0.952 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 25.403 -3.185 27.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.079 3.921 3 N -0.357 5.357 4 C 0.386 3.614 5 O -0.388 6.388 6 C -0.191 4.191 7 N -0.070 5.070 8 N -0.085 5.085 9 H 0.304 0.696 10 C -0.183 4.183 11 C 0.008 3.992 12 F -0.077 7.077 13 C -0.160 4.160 14 C -0.088 4.088 15 N -0.211 5.211 16 C -0.096 4.096 17 C 0.232 3.768 18 O -0.458 6.458 19 N -0.205 5.205 20 C -0.425 4.425 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.546 5.546 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.093 4.093 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.240 0.760 33 H 0.216 0.784 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.224 0.776 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.032 23.864 -3.425 26.113 hybrid contribution 1.451 1.095 0.186 1.827 sum -8.581 24.959 -3.238 26.591 Atomic orbital electron populations 1.22173 0.92995 1.03181 1.02984 1.21250 0.94796 0.79733 0.96356 1.46100 1.52036 1.12050 1.25483 1.16669 0.80240 0.81997 0.82491 1.90836 1.36527 1.75714 1.35714 1.22287 1.04373 0.97171 0.95260 1.73635 1.15390 0.94270 1.23663 1.43033 1.37845 1.09127 1.18460 0.69628 1.22710 1.02228 1.01302 0.92055 1.17185 1.00293 0.93741 0.87941 1.91556 1.73257 1.95912 1.46985 1.22920 0.98199 0.98486 0.96363 1.23371 0.95248 0.99557 0.90595 1.64548 1.20858 1.33618 1.02046 1.22087 0.92386 0.97318 0.97793 1.19689 0.83208 0.87732 0.86199 1.90515 1.63339 1.60754 1.31184 1.41865 1.26639 1.20872 1.31078 1.19745 1.10291 0.96912 1.15565 0.87881 1.25249 0.97081 0.99740 0.95995 1.69621 1.24561 1.39198 1.21173 0.85811 0.78675 0.81337 0.78601 1.19211 1.20829 1.20782 1.23221 0.98920 0.91772 0.95409 0.90348 0.90829 0.92727 0.76004 0.78392 0.89539 0.90401 0.94503 0.88181 0.93259 0.89310 0.77574 0.92009 0.93352 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.14 37.16 0.30 -1.50 16 2 C 0.16 2.02 0.94 -130.46 -0.12 1.90 16 3 N -0.70 -7.88 5.15 -47.35 -0.24 -8.13 16 4 C 0.60 7.67 7.01 -12.43 -0.09 7.59 16 5 O -0.51 -8.00 13.54 5.29 0.07 -7.92 16 6 C -0.03 -0.31 7.13 -82.74 -0.59 -0.90 16 7 N -0.23 -1.94 11.91 33.43 0.40 -1.54 16 8 N -0.37 -1.70 6.86 30.63 0.21 -1.49 16 9 H 0.46 0.19 8.96 -190.44 -1.71 -1.52 16 10 C -0.04 -0.20 12.06 -16.79 -0.20 -0.40 16 11 C 0.04 0.37 8.03 -39.26 -0.32 0.06 16 12 F -0.10 -1.17 17.03 2.25 0.04 -1.13 16 13 C -0.12 -1.74 5.85 -24.73 -0.14 -1.88 16 14 C 0.04 0.66 5.94 -1.75 -0.01 0.65 16 15 N -0.49 -8.14 4.91 -231.71 -1.14 -9.28 16 16 C 0.04 0.64 5.19 -4.97 -0.03 0.61 16 17 C 0.45 10.62 7.61 -10.98 -0.08 10.54 16 18 O -0.57 -15.68 14.64 5.55 0.08 -15.60 16 19 N -0.57 -14.45 5.29 -10.96 -0.06 -14.51 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.04 0.45 6.12 -2.76 -0.02 0.43 16 29 H 0.08 1.03 6.17 -51.93 -0.32 0.71 16 30 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.40 3.86 7.81 -40.82 -0.32 3.54 16 33 H 0.20 0.21 8.06 -52.49 -0.42 -0.22 16 34 H 0.09 1.26 7.86 -51.93 -0.41 0.85 16 35 H 0.08 1.16 6.68 -51.93 -0.35 0.81 16 36 H 0.04 0.59 7.81 -51.93 -0.41 0.19 16 37 H 0.10 1.95 7.10 -51.93 -0.37 1.59 16 38 H 0.05 0.80 7.83 -51.93 -0.41 0.39 16 39 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 40 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 41 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.05 0.53 7.09 -51.93 -0.37 0.16 16 43 H 0.09 1.09 7.68 -51.93 -0.40 0.69 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -35.60 363.23 -7.57 -43.17 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.57 Total: 9.62 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -1.54 Total: 9.11 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.11 Total: -58.92 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.15 Total: -23.53 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.60 -7.57 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733409357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.861 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds