Wall clock time and date at job start Sat Apr 11 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 110.27329 * 2 1 4 4 C 1.34777 * 119.99724 * 300.70085 * 3 2 1 5 5 O 1.21583 * 120.00271 * 359.97438 * 4 3 2 6 6 C 1.47615 * 119.99726 * 179.72725 * 4 3 2 7 7 N 1.31870 * 126.46091 * 0.29206 * 6 4 3 8 8 N 1.28465 * 110.16035 * 180.02562 * 7 6 4 9 9 H 0.97001 * 124.93953 * 179.97438 * 8 7 6 10 10 C 1.35729 * 110.12920 * 0.02562 * 8 7 6 11 11 C 1.35541 * 107.11828 * 359.72350 * 10 8 7 12 12 F 1.35102 * 127.24725 * 180.25724 * 11 10 8 13 13 C 1.54593 * 110.30800 * 237.91190 * 2 1 3 14 14 C 1.55198 * 102.79814 * 219.05011 * 13 2 1 15 15 N 1.48538 * 103.23869 * 37.43385 * 14 13 2 16 16 C 1.46902 * 111.00020 * 200.25714 * 15 14 13 17 17 C 1.50701 * 109.47028 * 287.39765 * 16 15 14 18 18 O 1.21293 * 119.99917 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99701 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99746 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99738 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99997 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99735 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99888 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47153 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47140 * 119.99948 * 24 22 20 27 27 H 1.48498 * 109.46837 * 239.99243 * 24 22 20 28 28 C 1.47900 * 105.81747 * 320.76929 * 15 14 13 29 29 H 1.09000 * 109.47061 * 59.30160 * 1 2 3 30 30 H 1.09002 * 109.47124 * 179.29981 * 1 2 3 31 31 H 1.08997 * 109.47748 * 299.29935 * 1 2 3 32 32 H 0.96990 * 119.99784 * 120.69656 * 3 2 1 33 33 H 1.08000 * 126.44449 * 180.02562 * 10 8 7 34 34 H 1.09001 * 110.72659 * 337.38234 * 13 2 1 35 35 H 1.08990 * 110.72544 * 100.67127 * 13 2 1 36 36 H 1.09001 * 110.68419 * 278.98545 * 14 13 2 37 37 H 1.09000 * 110.78944 * 155.93023 * 14 13 2 38 38 H 1.09003 * 109.47192 * 47.39639 * 16 15 14 39 39 H 1.08998 * 109.47129 * 167.39579 * 16 15 14 40 40 H 0.96999 * 120.00191 * 359.97438 * 19 17 16 41 41 H 0.97007 * 119.99729 * 180.02562 * 23 22 20 42 42 H 1.08999 * 109.92247 * 265.97659 * 28 15 14 43 43 H 1.09004 * 109.91531 * 144.68509 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0377 1.3743 0.0000 4 6 1.7121 2.2129 -1.0036 5 8 0.9976 1.8287 -1.9092 6 6 2.2187 3.5994 -1.0005 7 7 2.9979 4.1470 -0.0884 8 7 3.2471 5.3694 -0.3951 9 1 3.7985 5.9720 0.1280 10 6 2.6259 5.6954 -1.5570 11 6 1.9634 4.5908 -1.9788 12 9 1.2144 4.4632 -3.0960 13 6 2.0666 -0.7702 -1.2283 14 6 3.2882 -1.5326 -0.6494 15 7 2.8333 -1.9216 0.7100 16 6 3.9768 -2.2223 1.5818 17 6 4.5876 -3.5379 1.1731 18 8 4.1170 -4.1632 0.2464 19 7 5.6569 -4.0197 1.8373 20 6 6.2130 -5.2163 1.4652 21 1 5.7939 -5.7730 0.6400 22 6 7.3150 -5.7132 2.1503 23 7 7.8245 -5.0359 3.1545 24 14 8.0722 -7.3440 1.6436 25 1 7.3180 -7.9039 0.4935 26 1 9.4885 -7.1314 1.2511 27 1 8.0119 -8.2932 2.7840 28 6 2.0645 -0.7672 1.2236 29 1 -0.3633 0.5246 -0.8837 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3634 0.5029 0.8961 32 1 2.6079 1.6806 0.7223 33 1 2.6578 6.6534 -2.0547 34 1 1.3179 -1.4681 -1.6033 35 1 2.3775 -0.0788 -2.0115 36 1 4.1581 -0.8784 -0.5915 37 1 3.5119 -2.4159 -1.2476 38 1 4.7216 -1.4318 1.4899 39 1 3.6386 -2.2844 2.6162 40 1 6.0335 -3.5194 2.5782 41 1 8.5941 -5.3827 3.6325 42 1 2.7147 -0.1202 1.8125 43 1 1.2326 -1.1174 1.8347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733409357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:59 Heat of formation + Delta-G solvation = -51.377704 kcal Electronic energy + Delta-G solvation = -29156.431238 eV Core-core repulsion = 24766.125994 eV Total energy + Delta-G solvation = -4390.305244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.71387 -43.72279 -41.51333 -40.20472 -38.98138 -36.08537 -35.51341 -33.54831 -33.22262 -32.12541 -31.55184 -30.69284 -28.90709 -26.93458 -25.88780 -25.06787 -23.06825 -22.76408 -21.60684 -21.05247 -20.49858 -19.90016 -19.84907 -18.40658 -17.84364 -17.48124 -17.29967 -16.94976 -16.66169 -16.25658 -16.17950 -16.03069 -15.89672 -15.70671 -15.55945 -15.36322 -14.85953 -14.67307 -14.19801 -14.14168 -13.67022 -13.59843 -13.42200 -13.21388 -12.95847 -12.92069 -12.45407 -12.40434 -12.37448 -12.17235 -12.11375 -12.00619 -11.91613 -11.47833 -11.09225 -10.69897 -10.30600 -10.17922 -10.02245 -9.98658 -9.34377 -8.45612 -5.93554 0.28077 0.79234 1.36673 1.41765 1.55855 1.67934 1.99814 2.08039 2.14774 2.29659 2.81428 3.02308 3.21108 3.31432 3.47786 3.52986 3.69162 3.82954 3.91368 3.96047 4.21695 4.28516 4.30360 4.40435 4.44313 4.51583 4.57786 4.74841 4.81141 4.85770 4.93754 5.07663 5.10231 5.17730 5.31404 5.42264 5.45139 5.82037 5.89777 5.93526 6.09295 6.36324 6.61893 6.63033 7.08707 7.15292 7.58869 8.15593 8.72188 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.002187 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.146485 B =12797.823631 C =13421.261630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.171 3.829 3 N -0.694 5.694 4 C 0.599 3.401 5 O -0.553 6.553 6 C -0.058 4.058 7 N -0.236 5.236 8 N -0.343 5.343 9 H 0.478 0.522 10 C 0.005 3.995 11 C -0.009 4.009 12 F -0.120 7.120 13 C -0.114 4.114 14 C 0.045 3.955 15 N -0.508 5.508 16 C 0.049 3.951 17 C 0.442 3.558 18 O -0.616 6.616 19 N -0.576 5.576 20 C -0.329 4.329 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.040 3.960 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.414 0.586 33 H 0.246 0.754 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.075 0.925 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 27.896 -1.483 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.085 3.915 3 N -0.347 5.347 4 C 0.384 3.616 5 O -0.429 6.429 6 C -0.218 4.218 7 N -0.075 5.075 8 N -0.063 5.063 9 H 0.329 0.671 10 C -0.141 4.141 11 C -0.039 4.039 12 F -0.099 7.099 13 C -0.153 4.153 14 C -0.083 4.083 15 N -0.232 5.232 16 C -0.083 4.083 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.214 5.214 20 C -0.459 4.459 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.087 4.087 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.252 0.748 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.135 0.865 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.316 26.401 -1.656 28.045 hybrid contribution 1.257 0.431 -0.345 1.373 sum -8.059 26.832 -2.001 28.087 Atomic orbital electron populations 1.22105 0.92308 1.03228 1.03074 1.21114 0.95233 0.80128 0.95064 1.45964 1.51872 1.11314 1.25530 1.16995 0.79650 0.82959 0.81994 1.90810 1.38286 1.76696 1.37090 1.22050 1.06261 0.96648 0.96879 1.73573 1.15058 0.95688 1.23164 1.43236 1.36606 1.08254 1.18199 0.67081 1.23315 0.98681 1.01311 0.90794 1.17665 1.02588 0.95455 0.88213 1.91489 1.74124 1.96170 1.48074 1.22799 0.97153 0.98155 0.97144 1.23186 0.96330 0.98081 0.90715 1.64455 1.20648 1.36256 1.01877 1.21965 0.93176 0.94076 0.99060 1.20787 0.82149 0.89248 0.84885 1.90493 1.64288 1.62542 1.32843 1.41922 1.27357 1.20509 1.31587 1.19661 1.11764 0.98464 1.16027 0.90559 1.25997 0.96832 1.02753 0.95709 1.69672 1.24803 1.40340 1.21397 0.84902 0.77973 0.77441 0.78216 1.19995 1.19598 1.19545 1.23271 0.99226 0.90749 0.95489 0.92090 0.90737 0.90820 0.74796 0.73753 0.90364 0.91303 0.94103 0.92087 0.90999 0.86537 0.76983 0.91350 0.90719 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.14 71.98 0.59 -2.77 16 2 C 0.17 4.05 0.94 4.48 0.00 4.06 16 3 N -0.69 -14.83 5.15 -421.98 -2.17 -17.00 16 4 C 0.60 15.32 7.01 86.72 0.61 15.92 16 5 O -0.55 -17.89 13.54 -3.98 -0.05 -17.94 16 6 C -0.06 -1.21 7.13 42.44 0.30 -0.91 16 7 N -0.24 -3.41 11.91 -48.15 -0.57 -3.99 16 8 N -0.34 -1.97 6.86 -56.99 -0.39 -2.36 16 9 H 0.48 -1.65 8.96 -219.99 -1.97 -3.62 16 10 C 0.01 0.03 12.06 83.47 1.01 1.04 16 11 C -0.01 -0.18 8.03 22.48 0.18 0.00 16 12 F -0.12 -2.89 17.03 44.97 0.77 -2.13 16 13 C -0.11 -3.36 5.85 31.89 0.19 -3.17 16 14 C 0.04 1.52 5.94 86.74 0.52 2.03 16 15 N -0.51 -16.56 4.91 -887.00 -4.35 -20.91 16 16 C 0.05 1.66 5.19 85.56 0.44 2.11 16 17 C 0.44 21.30 7.61 87.66 0.67 21.97 16 18 O -0.62 -34.88 14.64 -3.07 -0.04 -34.93 16 19 N -0.58 -29.74 5.29 -306.97 -1.62 -31.37 16 20 C -0.33 -18.93 9.68 84.04 0.81 -18.11 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 23 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 24 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 C 0.04 0.92 6.12 86.45 0.53 1.45 16 29 H 0.06 1.62 6.17 -2.39 -0.01 1.61 16 30 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.41 7.07 7.81 -92.72 -0.72 6.34 16 33 H 0.25 -0.77 8.06 -2.91 -0.02 -0.79 16 34 H 0.08 2.41 7.86 -2.39 -0.02 2.39 16 35 H 0.07 2.16 6.68 -2.39 -0.02 2.14 16 36 H 0.04 1.33 7.81 -2.39 -0.02 1.31 16 37 H 0.06 2.54 7.10 -2.39 -0.02 2.52 16 38 H 0.07 2.16 7.83 -2.39 -0.02 2.15 16 39 H 0.12 3.37 8.08 -2.39 -0.02 3.36 16 40 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 41 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 42 H 0.07 1.35 7.09 -2.39 -0.02 1.34 16 43 H 0.11 2.21 7.68 -2.39 -0.02 2.20 16 Total: -1.00 -81.62 363.23 -2.14 -83.77 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -2.32 Total: 27.50 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: 6.31 Total: 23.37 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -8.83 Total: -125.12 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.10 Total: -52.87 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.77 Total: -2.13 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -81.62 -2.14 -83.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733409357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.388 kcal (2) G-P(sol) polarization free energy of solvation -81.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds