Wall clock time and date at job start Sat Apr 11 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00242 * 2 1 4 4 C 1.50693 * 109.47450 * 179.97438 * 3 2 1 5 5 N 1.28646 * 124.72490 * 89.99877 * 4 3 2 6 6 C 1.33553 * 115.77254 * 180.02562 * 5 4 3 7 7 C 1.47265 * 123.14381 * 179.97438 * 6 5 4 8 8 O 1.21635 * 120.00124 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99998 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99965 * 179.72868 * 9 7 6 11 11 C 1.53002 * 109.47298 * 175.12551 * 10 9 7 12 12 N 1.46500 * 110.01434 * 303.90324 * 11 10 9 13 13 C 1.36935 * 120.00075 * 301.44720 * 12 11 10 14 14 H 1.07993 * 119.99904 * 354.22700 * 13 12 11 15 15 C 1.38815 * 119.99883 * 174.22889 * 13 12 11 16 16 N 1.31614 * 119.99894 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99893 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47097 * 90.00484 * 17 15 13 19 19 H 1.48507 * 109.47188 * 210.00176 * 17 15 13 20 20 H 1.48496 * 109.47352 * 329.99945 * 17 15 13 21 21 C 1.54268 * 110.03285 * 182.45950 * 11 10 9 22 22 C 1.54890 * 104.19421 * 217.10747 * 21 11 10 23 23 C 1.54894 * 102.74829 * 37.94168 * 22 21 11 24 24 C 1.53877 * 110.02783 * 65.29285 * 11 10 9 25 25 C 1.35213 * 113.71675 * 0.24082 * 6 5 4 26 26 S 1.70775 * 124.71963 * 270.00171 * 4 3 2 27 27 H 1.08994 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47122 * 300.00624 * 1 2 3 29 29 H 1.09000 * 109.46669 * 59.99811 * 1 2 3 30 30 H 1.09007 * 109.47383 * 59.99528 * 3 2 1 31 31 H 1.09006 * 109.46920 * 299.99843 * 3 2 1 32 32 H 0.96992 * 119.99892 * 0.02562 * 9 7 6 33 33 H 1.09002 * 109.47038 * 295.12595 * 10 9 7 34 34 H 1.08999 * 109.47461 * 55.12406 * 10 9 7 35 35 H 0.97004 * 119.99512 * 121.45037 * 12 11 10 36 36 H 0.97000 * 120.00272 * 179.97438 * 16 15 13 37 37 H 1.09002 * 110.48795 * 335.78540 * 21 11 10 38 38 H 1.08999 * 110.48381 * 98.42558 * 21 11 10 39 39 H 1.09004 * 110.75318 * 279.62666 * 22 21 11 40 40 H 1.08998 * 110.75361 * 156.26116 * 22 21 11 41 41 H 1.08997 * 110.48319 * 203.38024 * 23 22 21 42 42 H 1.08999 * 110.48459 * 80.73964 * 23 22 21 43 43 H 1.08997 * 110.02856 * 238.56717 * 24 11 10 44 44 H 1.08997 * 110.03336 * 0.02562 * 24 11 10 45 45 H 1.07991 * 125.59071 * 179.76071 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2435 1.1284 -1.0564 6 6 5.5585 1.0238 -0.8480 7 6 6.5431 0.9450 -1.9403 8 8 7.7285 0.8502 -1.6850 9 7 6.1306 0.9779 -3.2230 10 6 7.1105 0.9055 -4.3096 11 6 6.3795 0.8396 -5.6521 12 7 5.4516 -0.2941 -5.6627 13 6 5.9206 -1.5646 -5.4602 14 1 6.9832 -1.7425 -5.3858 15 6 5.0302 -2.6239 -5.3506 16 7 5.4809 -3.8450 -5.1555 17 14 3.1922 -2.3160 -5.4787 18 1 2.7686 -2.4312 -6.8973 19 1 2.4640 -3.3199 -4.6617 20 1 2.8827 -0.9524 -4.9787 21 6 7.3981 0.7009 -6.8023 22 6 6.7967 1.5533 -7.9472 23 6 6.1923 2.7628 -7.1915 24 6 5.6128 2.1506 -5.8996 25 6 5.9010 0.9912 0.4596 26 16 4.4816 1.1099 1.4047 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6887 1.8465 0.8900 31 1 1.6887 1.8463 -0.8901 32 1 5.1853 1.0538 -3.4266 33 1 7.7462 1.7906 -4.2851 34 1 7.7247 0.0135 -4.1862 35 1 4.5051 -0.1447 -5.8131 36 1 4.8587 -4.5851 -5.0786 37 1 8.3687 1.0958 -6.5020 38 1 7.4876 -0.3412 -7.1090 39 1 6.0197 0.9993 -8.4740 40 1 7.5756 1.8785 -8.6367 41 1 5.4017 3.2253 -7.7824 42 1 6.9681 3.4907 -6.9542 43 1 4.5505 1.9432 -6.0285 44 1 5.7619 2.8339 -5.0635 45 1 6.9067 0.9065 0.8440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:16 Heat of formation + Delta-G solvation = -23.949568 kcal Electronic energy + Delta-G solvation = -27843.622257 eV Core-core repulsion = 23988.426811 eV Total energy + Delta-G solvation = -3855.195446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.37961 -39.01534 -38.17238 -37.62792 -34.12728 -33.28778 -31.70234 -30.90676 -28.41084 -28.31613 -28.29695 -26.29236 -25.44031 -23.66295 -22.76443 -21.32300 -20.31026 -19.68182 -18.85783 -18.27480 -17.50623 -16.83973 -16.57926 -16.06521 -15.85986 -15.53541 -15.07841 -14.95808 -14.63424 -14.31422 -14.08992 -13.80669 -13.57341 -12.99548 -12.91752 -12.79721 -12.60518 -12.45843 -12.06468 -12.01438 -11.76888 -11.68085 -11.23027 -10.79988 -10.77505 -10.62869 -10.41754 -10.32403 -10.19838 -10.07167 -9.95441 -9.92446 -9.74156 -9.69601 -9.49837 -9.04097 -8.86957 -8.40192 -7.25428 -5.72702 -3.09325 0.42652 1.12084 1.51696 2.00843 3.36429 3.40271 3.43424 3.48945 3.70727 3.75125 4.14066 4.62892 4.63159 4.93303 5.03343 5.04349 5.05625 5.07550 5.10501 5.17290 5.22243 5.32353 5.44916 5.46585 5.58615 5.71750 5.86752 5.88167 5.89804 6.03380 6.12327 6.21415 6.25792 6.38277 6.50858 6.52438 6.72606 6.77978 6.78291 6.96098 7.06352 7.38836 8.02780 8.07429 8.45809 8.64521 9.23273 9.95556 10.13954 11.45321 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.004286 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.748902 B = 6531.998497 C = 7778.443583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.142 3.858 4 C 0.014 3.986 5 N -0.418 5.418 6 C 0.020 3.980 7 C 0.588 3.412 8 O -0.547 6.547 9 N -0.680 5.680 10 C 0.118 3.882 11 C 0.195 3.805 12 N -0.736 5.736 13 C -0.238 4.238 14 H 0.091 0.909 15 C 0.009 3.991 16 N -0.931 5.931 17 Si 0.879 3.121 18 H -0.287 1.287 19 H -0.293 1.293 20 H -0.275 1.275 21 C -0.130 4.130 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.129 4.129 25 C -0.223 4.223 26 S 0.220 5.780 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.408 0.592 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.361 0.639 36 H 0.258 0.742 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 16.063 10.261 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.062 3.938 4 C -0.265 4.265 5 N -0.135 5.135 6 C -0.115 4.115 7 C 0.371 3.629 8 O -0.426 6.426 9 N -0.328 5.328 10 C -0.007 4.007 11 C 0.103 3.897 12 N -0.378 5.378 13 C -0.368 4.368 14 H 0.109 0.891 15 C -0.187 4.187 16 N -0.578 5.578 17 Si 0.710 3.290 18 H -0.214 1.214 19 H -0.220 1.220 20 H -0.201 1.201 21 C -0.170 4.170 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.167 4.167 25 C -0.365 4.365 26 S 0.477 5.523 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.244 0.756 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.195 0.805 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.389 15.642 10.985 20.153 hybrid contribution -1.375 -0.003 -0.898 1.642 sum -7.763 15.639 10.086 20.164 Atomic orbital electron populations 1.22808 0.80032 1.03446 1.00166 1.88012 1.20258 1.26127 1.95465 1.20750 0.84412 0.86223 1.02387 1.26559 1.00666 1.07277 0.91991 1.66869 1.03294 1.12116 1.31216 1.20579 0.89838 1.07251 0.93858 1.16962 0.86428 0.77397 0.82149 1.90777 1.16177 1.51693 1.83924 1.45544 1.11896 1.70940 1.04466 1.21964 0.91051 1.01134 0.86592 1.20417 0.90418 0.87179 0.91654 1.42896 1.04838 1.02955 1.87146 1.18917 0.94293 0.81986 1.41570 0.89117 1.24640 0.97025 0.95337 1.01662 1.69695 1.33449 0.98581 1.56116 0.86626 0.87642 0.77398 0.77338 1.21384 1.21984 1.20095 1.22797 0.97362 1.01522 0.95342 1.22405 0.99681 0.96021 0.97443 1.22310 0.99576 0.97666 0.96259 1.22471 1.00007 0.96567 0.97657 1.26656 1.06002 1.06936 0.96867 1.82625 0.94989 1.63543 1.11180 0.89079 0.93806 0.93538 0.90878 0.89945 0.75586 0.92667 0.90620 0.80535 0.93178 0.92554 0.89729 0.91501 0.92480 0.92356 0.92069 0.91637 0.91766 0.79143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.88 10.69 -35.23 -0.38 -5.25 16 3 C 0.14 1.51 6.51 36.00 0.23 1.74 16 4 C 0.01 0.19 6.97 -13.62 -0.09 0.10 16 5 N -0.42 -6.96 10.12 -8.51 -0.09 -7.04 16 6 C 0.02 0.35 6.70 -84.53 -0.57 -0.22 16 7 C 0.59 11.71 7.80 -12.59 -0.10 11.62 16 8 O -0.55 -12.00 16.71 5.25 0.09 -11.91 16 9 N -0.68 -13.22 5.10 -61.43 -0.31 -13.53 16 10 C 0.12 2.27 3.99 -4.04 -0.02 2.25 16 11 C 0.20 3.57 0.68 -130.70 -0.09 3.49 16 12 N -0.74 -16.47 4.56 -46.20 -0.21 -16.68 16 13 C -0.24 -6.48 8.87 -15.06 -0.13 -6.62 16 14 H 0.09 2.70 7.46 -52.49 -0.39 2.31 16 15 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 16 N -0.93 -29.51 13.97 55.49 0.78 -28.73 16 17 Si 0.88 22.36 27.68 -169.99 -4.71 17.66 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.74 7.11 56.52 0.40 -7.33 16 20 H -0.28 -6.58 6.61 56.52 0.37 -6.21 16 21 C -0.13 -2.25 5.94 -25.07 -0.15 -2.39 16 22 C -0.12 -1.72 6.91 -24.74 -0.17 -1.89 16 23 C -0.12 -1.58 6.83 -25.07 -0.17 -1.75 16 24 C -0.13 -1.95 5.80 -25.61 -0.15 -2.10 16 25 C -0.22 -3.12 10.62 29.66 0.31 -2.80 16 26 S 0.22 2.36 22.92 -107.50 -2.46 -0.10 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.41 7.88 7.51 -40.82 -0.31 7.58 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.69 7.49 -51.93 -0.39 1.30 16 35 H 0.36 8.08 5.21 -40.82 -0.21 7.87 16 36 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 37 H 0.06 0.88 7.85 -51.93 -0.41 0.48 16 38 H 0.08 1.70 7.11 -51.93 -0.37 1.33 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 1.01 7.44 -51.93 -0.39 0.62 16 44 H 0.06 0.91 7.55 -51.93 -0.39 0.52 16 45 H 0.19 2.40 8.03 -52.49 -0.42 1.98 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -34.78 382.06 -8.27 -43.06 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -6.67 Total: 13.80 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.07 Total: 2.98 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: 0.17 Total: -65.99 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.29 Total: -17.17 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.66 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.46 Total: -0.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.78 -8.27 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.106 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds