Wall clock time and date at job start Sat Apr 11 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35639 * 125.67448 * 2 1 4 4 C 1.35519 * 108.84604 * 179.82809 * 3 2 1 5 5 Cl 1.73603 * 126.06982 * 180.13496 * 4 3 2 6 6 C 1.39880 * 107.85392 * 0.42904 * 4 3 2 7 7 C 1.37635 * 125.67870 * 180.30285 * 2 1 3 8 8 C 1.46671 * 126.22029 * 359.97022 * 7 2 1 9 9 O 1.21694 * 120.00322 * 5.04857 * 8 7 2 10 10 N 1.34772 * 119.99797 * 185.04920 * 8 7 2 11 11 C 1.46501 * 120.00288 * 184.88739 * 10 8 7 12 12 C 1.52997 * 109.47620 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.45697 * 60.02888 * 12 11 10 14 14 C 1.53043 * 109.45863 * 300.07303 * 12 11 10 15 15 C 1.53194 * 109.30830 * 178.61140 * 14 12 11 16 16 N 1.46931 * 108.77601 * 54.63726 * 15 14 12 17 17 C 1.36935 * 120.63267 * 126.40741 * 16 15 14 18 18 H 1.07992 * 120.00286 * 211.55330 * 17 16 15 19 19 C 1.38818 * 119.99570 * 31.56629 * 17 16 15 20 20 N 1.31616 * 120.00429 * 10.30550 * 19 17 16 21 21 Si 1.86808 * 119.99547 * 190.31602 * 19 17 16 22 22 H 1.48498 * 109.47307 * 59.99431 * 21 19 17 23 23 H 1.48500 * 109.47070 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46954 * 299.99503 * 21 19 17 25 25 C 1.46928 * 118.73580 * 306.38616 * 16 15 14 26 26 C 1.53040 * 109.46106 * 180.02562 * 12 11 10 27 27 H 1.08997 * 109.47013 * 264.12346 * 1 2 3 28 28 H 1.09000 * 109.46670 * 24.12005 * 1 2 3 29 29 H 1.08993 * 109.46966 * 144.11646 * 1 2 3 30 30 H 1.08000 * 125.57121 * 359.96492 * 3 2 1 31 31 H 1.08000 * 126.45163 * 179.70535 * 6 4 3 32 32 H 0.97005 * 120.00053 * 4.89611 * 10 8 7 33 33 H 1.09003 * 109.46882 * 300.00468 * 11 10 8 34 34 H 1.09007 * 109.46837 * 59.99878 * 11 10 8 35 35 H 1.08999 * 109.47276 * 60.00489 * 13 12 11 36 36 H 1.08999 * 109.46552 * 179.97438 * 13 12 11 37 37 H 1.08999 * 109.47308 * 299.99619 * 13 12 11 38 38 H 1.08999 * 109.49846 * 298.55885 * 14 12 11 39 39 H 1.08990 * 109.49934 * 58.66188 * 14 12 11 40 40 H 1.08991 * 109.59200 * 294.84584 * 15 14 12 41 41 H 1.09000 * 109.58216 * 174.41889 * 15 14 12 42 42 H 0.97000 * 120.00308 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.58321 * 293.82456 * 25 16 15 44 44 H 1.08996 * 109.70314 * 173.46895 * 25 16 15 45 45 H 1.08998 * 109.49815 * 301.33713 * 26 12 11 46 46 H 1.08994 * 109.49965 * 61.43699 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1019 0.0000 4 6 3.5532 0.7095 0.0038 5 17 4.9378 1.7568 0.0087 6 6 3.5783 -0.6890 -0.0036 7 6 2.2678 -1.1180 -0.0059 8 6 1.8121 -2.5121 -0.0127 9 8 0.6251 -2.7639 -0.1062 10 7 2.7079 -3.5143 0.0847 11 6 2.2653 -4.9062 -0.0295 12 6 3.4698 -5.8381 0.1166 13 6 4.1194 -5.6207 1.4847 14 6 4.4873 -5.5327 -0.9850 15 6 5.7070 -6.4438 -0.8148 16 7 5.2529 -7.8409 -0.7832 17 6 5.7919 -8.7691 -1.6335 18 1 5.1884 -9.5916 -1.9878 19 6 7.1142 -8.6530 -2.0398 20 7 7.9071 -7.7782 -1.4581 21 14 7.7682 -9.7382 -3.4125 22 1 6.9888 -9.4918 -4.6523 23 1 9.1982 -9.4206 -3.6559 24 1 7.6372 -11.1646 -3.0208 25 6 4.2099 -8.2231 0.1785 26 6 3.0071 -7.2920 -0.0034 27 1 -0.3633 -0.1052 1.0222 28 1 -0.3633 0.9380 -0.4200 29 1 -0.3633 -0.8326 -0.6023 30 1 1.9088 2.1245 -0.0005 31 1 4.4583 -1.3150 -0.0074 32 1 3.6458 -3.3141 0.2305 33 1 1.5413 -5.1228 0.7560 34 1 1.8015 -5.0611 -1.0038 35 1 3.3949 -5.8375 2.2696 36 1 4.9773 -6.2849 1.5891 37 1 4.4487 -4.5851 1.5701 38 1 4.0330 -5.7113 -1.9596 39 1 4.7989 -4.4907 -0.9138 40 1 6.2152 -6.2036 0.1190 41 1 6.3898 -6.3005 -1.6522 42 1 8.8309 -7.6968 -1.7423 43 1 4.5961 -8.1278 1.1934 44 1 3.9045 -9.2538 -0.0009 45 1 2.2650 -7.5023 0.7667 46 1 2.5670 -7.4537 -0.9873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754719644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:19 Heat of formation + Delta-G solvation = 21.016152 kcal Electronic energy + Delta-G solvation = -27565.874673 eV Core-core repulsion = 23710.585380 eV Total energy + Delta-G solvation = -3855.289292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73723 -39.62402 -38.28081 -36.60112 -35.14598 -33.51633 -32.73098 -31.00049 -29.94161 -29.66112 -27.09370 -26.78004 -26.62694 -24.17014 -22.82412 -22.11020 -21.03963 -20.56941 -19.86876 -18.35301 -17.92693 -16.48383 -16.19438 -16.03022 -15.70879 -14.97847 -14.84749 -14.50681 -14.14866 -14.09606 -13.96578 -13.63771 -13.45288 -13.42199 -13.23335 -13.11156 -12.78631 -12.65903 -12.50075 -12.03666 -11.67347 -11.48390 -11.28215 -11.12509 -11.07491 -10.75678 -10.72017 -10.57351 -10.21942 -10.19070 -10.08578 -9.80859 -9.52721 -9.41904 -9.10112 -8.95077 -8.48967 -8.44966 -6.58347 -5.77471 -3.25087 1.15964 1.86715 2.17823 2.54257 3.18731 3.32834 3.38478 3.43941 3.44904 4.46020 4.49526 4.56686 4.61055 4.90672 4.96048 5.04076 5.15788 5.21936 5.24148 5.35283 5.43586 5.52071 5.64997 5.76133 5.83335 5.91329 6.09640 6.09804 6.13561 6.15159 6.31811 6.39702 6.46439 6.49928 6.54925 6.61471 6.70014 6.71366 6.79184 6.88636 7.00933 7.39101 7.45845 7.71464 7.80043 8.09061 8.49482 9.24260 9.85715 10.43950 11.30373 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.002668 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.936280 B =10492.007510 C =11829.292280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.404 5.404 3 C 0.029 3.971 4 C -0.121 4.121 5 Cl -0.049 7.049 6 C -0.128 4.128 7 C -0.034 4.034 8 C 0.587 3.413 9 O -0.553 6.553 10 N -0.706 5.706 11 C 0.132 3.868 12 C -0.064 4.064 13 C -0.143 4.143 14 C -0.131 4.131 15 C 0.172 3.828 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.062 0.938 19 C 0.005 3.995 20 N -0.905 5.905 21 Si 0.904 3.096 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.146 3.854 26 C -0.119 4.119 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.178 0.822 31 H 0.155 0.845 32 H 0.405 0.595 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.021 0.979 41 H 0.086 0.914 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.343 17.969 5.170 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.077 5.077 3 C -0.108 4.108 4 C -0.154 4.154 5 Cl -0.021 7.021 6 C -0.154 4.154 7 C -0.148 4.148 8 C 0.374 3.626 9 O -0.433 6.433 10 N -0.357 5.357 11 C 0.009 3.991 12 C -0.065 4.065 13 C -0.200 4.200 14 C -0.170 4.170 15 C 0.047 3.953 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.080 0.920 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.019 3.981 26 C -0.159 4.159 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.195 0.805 31 H 0.173 0.827 32 H 0.242 0.758 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.278 17.825 5.055 22.795 hybrid contribution 0.999 -0.160 -0.657 1.206 sum -12.279 17.665 4.398 21.959 Atomic orbital electron populations 1.22327 0.75134 1.05153 1.04599 1.43778 1.07126 1.04524 1.52241 1.21711 0.88965 0.92131 1.07994 1.19902 0.88059 0.91410 1.16050 1.98334 1.40589 1.65469 1.97665 1.21285 0.95430 0.93343 1.05354 1.20099 0.89576 0.88173 1.16909 1.16853 0.85723 0.83219 0.76832 1.90778 1.16117 1.84845 1.51537 1.45783 1.11318 1.06238 1.72367 1.21605 0.97182 0.78574 1.01726 1.20710 0.94089 0.94996 0.96672 1.21948 1.01441 1.01186 0.95404 1.22279 0.98665 0.99028 0.97062 1.20802 0.91629 0.82012 1.00897 1.43976 1.43212 1.04992 1.39224 1.19126 0.92682 1.06219 1.20228 0.91995 1.25150 0.95706 0.98802 0.99728 1.69949 1.05557 1.37478 1.41956 0.86361 0.77751 0.80379 0.82165 1.21029 1.21626 1.20909 1.20916 0.88603 0.95765 0.92771 1.21996 0.99067 0.93913 1.00951 0.90221 0.89587 0.87666 0.80529 0.82725 0.75834 0.91629 0.91503 0.93398 0.90613 0.93652 0.92553 0.93672 0.96062 0.89536 0.93586 0.96151 0.92947 0.92962 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 10.49 59.85 0.63 1.14 16 2 N -0.40 -4.03 3.16 -120.19 -0.38 -4.42 16 3 C 0.03 0.26 11.35 -16.84 -0.19 0.06 16 4 C -0.12 -1.26 6.66 -39.94 -0.27 -1.53 16 5 Cl -0.05 -0.49 29.30 -51.86 -1.52 -2.01 16 6 C -0.13 -1.41 10.34 -39.09 -0.40 -1.82 16 7 C -0.03 -0.40 6.88 -81.98 -0.56 -0.96 16 8 C 0.59 7.94 7.77 -12.86 -0.10 7.84 16 9 O -0.55 -8.70 14.78 5.19 0.08 -8.62 16 10 N -0.71 -8.96 4.92 -61.62 -0.30 -9.26 16 11 C 0.13 1.82 4.57 -4.04 -0.02 1.80 16 12 C -0.06 -0.97 0.53 -154.47 -0.08 -1.05 16 13 C -0.14 -2.05 7.54 37.16 0.28 -1.77 16 14 C -0.13 -2.30 4.75 -26.61 -0.13 -2.43 16 15 C 0.17 3.87 4.78 -3.71 -0.02 3.85 16 16 N -0.59 -14.22 2.99 -172.32 -0.51 -14.73 16 17 C -0.25 -6.79 9.58 -15.06 -0.14 -6.94 16 18 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 19 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 20 N -0.91 -25.67 11.04 55.49 0.61 -25.06 16 21 Si 0.90 21.48 29.57 -169.99 -5.03 16.46 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.15 2.91 6.05 -3.71 -0.02 2.89 16 26 C -0.12 -1.95 4.91 -26.61 -0.13 -2.08 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.10 0.98 6.54 -51.93 -0.34 0.64 16 30 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.16 1.53 7.48 -52.49 -0.39 1.13 16 32 H 0.40 4.67 5.10 -40.82 -0.21 4.46 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.28 4.98 -51.93 -0.26 1.03 16 37 H 0.04 0.58 6.86 -51.93 -0.36 0.22 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.70 6.82 -51.93 -0.35 0.34 16 40 H 0.02 0.50 6.69 -51.93 -0.35 0.15 16 41 H 0.09 2.24 6.11 -51.93 -0.32 1.92 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.02 0.41 6.69 -51.93 -0.35 0.06 16 44 H 0.05 1.05 7.94 -51.93 -0.41 0.63 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -30.76 372.87 -9.37 -40.12 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.68 Total: 2.84 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.25 Total: -0.95 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.59 Total: -53.46 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.62 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.46 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.52 Total: -2.01 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.76 -9.37 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754719644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.138 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds