Wall clock time and date at job start Sat Apr 11 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35639 * 125.67448 * 2 1 4 4 C 1.35519 * 108.84604 * 179.82809 * 3 2 1 5 5 Cl 1.73603 * 126.06982 * 180.13496 * 4 3 2 6 6 C 1.39880 * 107.85392 * 0.42904 * 4 3 2 7 7 C 1.37635 * 125.67870 * 180.30285 * 2 1 3 8 8 C 1.46671 * 126.22029 * 359.97022 * 7 2 1 9 9 O 1.21694 * 120.00322 * 5.04857 * 8 7 2 10 10 N 1.34772 * 119.99797 * 185.04920 * 8 7 2 11 11 C 1.46501 * 120.00288 * 184.88739 * 10 8 7 12 12 C 1.52997 * 109.47620 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.45697 * 60.02888 * 12 11 10 14 14 C 1.53043 * 109.45863 * 300.07303 * 12 11 10 15 15 C 1.53194 * 109.30830 * 178.61140 * 14 12 11 16 16 N 1.46931 * 108.77601 * 54.63726 * 15 14 12 17 17 C 1.36935 * 120.63267 * 126.40741 * 16 15 14 18 18 H 1.07992 * 120.00286 * 211.55330 * 17 16 15 19 19 C 1.38818 * 119.99570 * 31.56629 * 17 16 15 20 20 N 1.31616 * 120.00429 * 10.30550 * 19 17 16 21 21 Si 1.86808 * 119.99547 * 190.31602 * 19 17 16 22 22 H 1.48498 * 109.47307 * 59.99431 * 21 19 17 23 23 H 1.48500 * 109.47070 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46954 * 299.99503 * 21 19 17 25 25 C 1.46928 * 118.73580 * 306.38616 * 16 15 14 26 26 C 1.53040 * 109.46106 * 180.02562 * 12 11 10 27 27 H 1.08997 * 109.47013 * 264.12346 * 1 2 3 28 28 H 1.09000 * 109.46670 * 24.12005 * 1 2 3 29 29 H 1.08993 * 109.46966 * 144.11646 * 1 2 3 30 30 H 1.08000 * 125.57121 * 359.96492 * 3 2 1 31 31 H 1.08000 * 126.45163 * 179.70535 * 6 4 3 32 32 H 0.97005 * 120.00053 * 4.89611 * 10 8 7 33 33 H 1.09003 * 109.46882 * 300.00468 * 11 10 8 34 34 H 1.09007 * 109.46837 * 59.99878 * 11 10 8 35 35 H 1.08999 * 109.47276 * 60.00489 * 13 12 11 36 36 H 1.08999 * 109.46552 * 179.97438 * 13 12 11 37 37 H 1.08999 * 109.47308 * 299.99619 * 13 12 11 38 38 H 1.08999 * 109.49846 * 298.55885 * 14 12 11 39 39 H 1.08990 * 109.49934 * 58.66188 * 14 12 11 40 40 H 1.08991 * 109.59200 * 294.84584 * 15 14 12 41 41 H 1.09000 * 109.58216 * 174.41889 * 15 14 12 42 42 H 0.97000 * 120.00308 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.58321 * 293.82456 * 25 16 15 44 44 H 1.08996 * 109.70314 * 173.46895 * 25 16 15 45 45 H 1.08998 * 109.49815 * 301.33713 * 26 12 11 46 46 H 1.08994 * 109.49965 * 61.43699 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1019 0.0000 4 6 3.5532 0.7095 0.0038 5 17 4.9378 1.7568 0.0087 6 6 3.5783 -0.6890 -0.0036 7 6 2.2678 -1.1180 -0.0059 8 6 1.8121 -2.5121 -0.0127 9 8 0.6251 -2.7639 -0.1062 10 7 2.7079 -3.5143 0.0847 11 6 2.2653 -4.9062 -0.0295 12 6 3.4698 -5.8381 0.1166 13 6 4.1194 -5.6207 1.4847 14 6 4.4873 -5.5327 -0.9850 15 6 5.7070 -6.4438 -0.8148 16 7 5.2529 -7.8409 -0.7832 17 6 5.7919 -8.7691 -1.6335 18 1 5.1884 -9.5916 -1.9878 19 6 7.1142 -8.6530 -2.0398 20 7 7.9071 -7.7782 -1.4581 21 14 7.7682 -9.7382 -3.4125 22 1 6.9888 -9.4918 -4.6523 23 1 9.1982 -9.4206 -3.6559 24 1 7.6372 -11.1646 -3.0208 25 6 4.2099 -8.2231 0.1785 26 6 3.0071 -7.2920 -0.0034 27 1 -0.3633 -0.1052 1.0222 28 1 -0.3633 0.9380 -0.4200 29 1 -0.3633 -0.8326 -0.6023 30 1 1.9088 2.1245 -0.0005 31 1 4.4583 -1.3150 -0.0074 32 1 3.6458 -3.3141 0.2305 33 1 1.5413 -5.1228 0.7560 34 1 1.8015 -5.0611 -1.0038 35 1 3.3949 -5.8375 2.2696 36 1 4.9773 -6.2849 1.5891 37 1 4.4487 -4.5851 1.5701 38 1 4.0330 -5.7113 -1.9596 39 1 4.7989 -4.4907 -0.9138 40 1 6.2152 -6.2036 0.1190 41 1 6.3898 -6.3005 -1.6522 42 1 8.8309 -7.6968 -1.7423 43 1 4.5961 -8.1278 1.1934 44 1 3.9045 -9.2538 -0.0009 45 1 2.2650 -7.5023 0.7667 46 1 2.5670 -7.4537 -0.9873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754719644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:18 Heat of formation + Delta-G solvation = 3.740252 kcal Electronic energy + Delta-G solvation = -27566.623812 eV Core-core repulsion = 23710.585380 eV Total energy + Delta-G solvation = -3856.038431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.52239 -40.80759 -39.56309 -37.35379 -36.60415 -34.85644 -33.65887 -32.67000 -31.55092 -30.61649 -28.61072 -27.83181 -27.42430 -25.83303 -24.09207 -23.51216 -22.33658 -21.56859 -20.81901 -19.63415 -19.10753 -18.15544 -17.21726 -16.90490 -16.82896 -16.60381 -16.01835 -15.63685 -15.45054 -15.32739 -15.01279 -14.90958 -14.85691 -14.63503 -14.35668 -14.09395 -13.88291 -13.78367 -13.42014 -13.17632 -13.14109 -12.87373 -12.66027 -12.54747 -12.40418 -12.36249 -12.23816 -11.88701 -11.84874 -11.78299 -11.43233 -11.22206 -11.04237 -10.98638 -10.47985 -10.16704 -9.72995 -9.26359 -8.54248 -7.82986 -5.32964 0.31696 1.14294 1.42020 1.47496 1.49027 1.55524 1.72633 2.23188 2.44333 2.52635 3.31619 3.64504 3.75532 3.81796 3.88823 3.90866 3.97129 4.02555 4.23536 4.38856 4.43575 4.53960 4.55167 4.63755 4.72586 4.73627 4.77854 4.86359 4.88138 4.92114 4.99306 5.10575 5.15967 5.27615 5.33100 5.34335 5.43462 5.44361 5.52862 5.59748 5.68793 5.70166 5.90082 6.03709 6.44901 6.46445 7.08728 7.21355 7.92592 8.44020 9.21665 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.002668 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.936280 B =10492.007510 C =11829.292280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.406 5.406 3 C 0.050 3.950 4 C -0.143 4.143 5 Cl -0.048 7.048 6 C -0.129 4.129 7 C -0.061 4.061 8 C 0.587 3.413 9 O -0.579 6.579 10 N -0.702 5.702 11 C 0.145 3.855 12 C -0.054 4.054 13 C -0.137 4.137 14 C -0.118 4.118 15 C 0.181 3.819 16 N -0.610 5.610 17 C -0.263 4.263 18 H 0.061 0.939 19 C -0.047 4.047 20 N -0.933 5.933 21 Si 0.964 3.036 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.277 1.277 25 C 0.142 3.858 26 C -0.111 4.111 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.213 0.787 31 H 0.160 0.840 32 H 0.411 0.589 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.007 0.993 41 H 0.047 0.953 42 H 0.249 0.751 43 H 0.022 0.978 44 H 0.048 0.952 45 H 0.083 0.917 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.980 19.595 5.630 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.078 5.078 3 C -0.088 4.088 4 C -0.176 4.176 5 Cl -0.020 7.020 6 C -0.155 4.155 7 C -0.175 4.175 8 C 0.376 3.624 9 O -0.461 6.461 10 N -0.354 5.354 11 C 0.021 3.979 12 C -0.055 4.055 13 C -0.194 4.194 14 C -0.157 4.157 15 C 0.055 3.945 16 N -0.334 5.334 17 C -0.394 4.394 18 H 0.078 0.922 19 C -0.243 4.243 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.203 1.203 25 C 0.017 3.983 26 C -0.150 4.150 27 H 0.104 0.896 28 H 0.139 0.861 29 H 0.103 0.897 30 H 0.230 0.770 31 H 0.177 0.823 32 H 0.248 0.752 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.025 0.975 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.040 0.960 44 H 0.066 0.934 45 H 0.101 0.899 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.936 19.442 5.527 25.132 hybrid contribution 1.493 -0.622 -0.764 1.789 sum -13.443 18.820 4.762 23.613 Atomic orbital electron populations 1.22473 0.73793 1.06210 1.04914 1.44027 1.08028 1.04219 1.51572 1.22282 0.88294 0.93187 1.05026 1.20050 0.88862 0.91264 1.17424 1.98333 1.40683 1.65247 1.97732 1.21449 0.95421 0.94051 1.04606 1.19910 0.90251 0.87949 1.19368 1.17051 0.85310 0.83934 0.76111 1.90763 1.17137 1.85339 1.52889 1.45693 1.11596 1.05773 1.72305 1.21360 0.96146 0.78743 1.01631 1.20570 0.93967 0.94790 0.96132 1.21874 1.00722 1.01557 0.95260 1.22068 0.97117 0.99018 0.97486 1.20577 0.92921 0.82563 0.98416 1.44240 1.43968 1.05255 1.39933 1.19440 0.92910 1.06502 1.20551 0.92158 1.25848 0.96059 1.00336 1.02034 1.70112 1.05415 1.39008 1.43334 0.85396 0.76726 0.78962 0.79644 1.20595 1.21983 1.20258 1.21052 0.88850 0.96595 0.91806 1.21877 0.97843 0.93645 1.01674 0.89604 0.86087 0.89726 0.77020 0.82280 0.75168 0.90745 0.92323 0.91485 0.93420 0.92051 0.93846 0.91492 0.97517 0.93476 0.94184 0.96044 0.93392 0.89853 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 10.49 127.77 1.34 2.17 16 2 N -0.41 -7.19 3.16 -534.17 -1.69 -8.88 16 3 C 0.05 0.74 11.35 83.48 0.95 1.69 16 4 C -0.14 -2.69 6.66 22.04 0.15 -2.54 16 5 Cl -0.05 -0.88 29.30 -2.72 -0.08 -0.96 16 6 C -0.13 -2.66 10.34 22.59 0.23 -2.43 16 7 C -0.06 -1.37 6.88 40.35 0.28 -1.09 16 8 C 0.59 15.17 7.77 86.45 0.67 15.84 16 9 O -0.58 -17.66 14.78 -4.33 -0.06 -17.73 16 10 N -0.70 -16.71 4.92 -467.08 -2.30 -19.01 16 11 C 0.14 3.70 4.57 86.38 0.39 4.10 16 12 C -0.05 -1.56 0.53 -52.15 -0.03 -1.58 16 13 C -0.14 -3.71 7.54 71.98 0.54 -3.17 16 14 C -0.12 -4.11 4.75 30.67 0.15 -3.97 16 15 C 0.18 8.35 4.78 86.36 0.41 8.76 16 16 N -0.61 -29.94 2.99 -699.09 -2.09 -32.03 16 17 C -0.26 -14.45 9.58 84.04 0.81 -13.65 16 18 H 0.06 3.25 7.85 -2.91 -0.02 3.23 16 19 C -0.05 -2.63 5.06 84.86 0.43 -2.20 16 20 N -0.93 -54.59 11.04 21.65 0.24 -54.35 16 21 Si 0.96 44.96 29.57 68.60 2.03 46.99 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 C 0.14 5.66 6.05 86.36 0.52 6.19 16 26 C -0.11 -3.46 4.91 30.67 0.15 -3.31 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 28 H 0.12 0.64 8.12 -2.39 -0.02 0.62 16 29 H 0.08 1.48 6.54 -2.39 -0.02 1.46 16 30 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.16 2.97 7.48 -2.91 -0.02 2.94 16 32 H 0.41 8.77 5.10 -92.70 -0.47 8.30 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.58 4.98 -2.39 -0.01 1.57 16 37 H 0.06 1.45 6.86 -2.39 -0.02 1.44 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 2.02 6.82 -2.39 -0.02 2.01 16 40 H 0.01 0.33 6.69 -2.39 -0.02 0.31 16 41 H 0.05 2.54 6.11 -2.39 -0.01 2.52 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.02 0.86 6.69 -2.39 -0.02 0.84 16 44 H 0.05 1.91 7.94 -2.39 -0.02 1.89 16 45 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -68.19 372.87 3.57 -64.62 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.53 Total: 16.54 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 6.99 Total: 4.81 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -5.84 Total: -114.26 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.06 Total: -17.73 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -68.19 3.57 -64.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754719644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.357 kcal (2) G-P(sol) polarization free energy of solvation -68.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds