Wall clock time and date at job start Sat Apr 11 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.54275 * 2 1 4 4 O 1.42101 * 110.54298 * 223.25103 * 2 1 3 5 5 N 1.65599 * 104.44825 * 111.62486 * 2 1 3 6 6 C 1.46497 * 120.00110 * 65.00280 * 5 2 1 7 7 C 1.52997 * 109.47242 * 164.99451 * 6 5 2 8 8 H 1.08999 * 109.50149 * 54.92374 * 7 6 5 9 9 C 1.53115 * 109.50738 * 294.80224 * 7 6 5 10 10 C 1.53116 * 109.16252 * 182.40219 * 9 7 6 11 11 C 1.53042 * 109.27647 * 57.65476 * 10 9 7 12 12 N 1.46839 * 109.52295 * 300.82109 * 11 10 9 13 13 C 1.38825 * 111.00027 * 185.83705 * 12 11 10 14 14 C 1.39794 * 119.58001 * 55.51522 * 13 12 11 15 15 C 1.38605 * 119.49062 * 179.78940 * 14 13 12 16 16 C 1.38390 * 118.67929 * 0.48165 * 15 14 13 17 17 C 1.40563 * 119.14701 * 359.74543 * 16 15 14 18 18 C 1.41312 * 119.78106 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00537 * 0.02562 * 18 17 16 20 20 C 1.40029 * 119.99650 * 180.02562 * 18 17 16 21 21 N 1.30740 * 120.00105 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99743 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47145 * 90.00232 * 22 20 18 24 24 H 1.48504 * 109.47068 * 210.00304 * 22 20 18 25 25 H 1.48501 * 109.47121 * 330.00049 * 22 20 18 26 26 N 1.31953 * 119.58890 * 235.79256 * 13 12 11 27 27 C 1.46843 * 111.20142 * 61.74543 * 12 11 10 28 28 H 1.09003 * 109.47352 * 68.37645 * 1 2 3 29 29 H 1.09004 * 109.47032 * 188.37317 * 1 2 3 30 30 H 1.09000 * 109.47124 * 308.37589 * 1 2 3 31 31 H 0.96999 * 120.00046 * 244.99555 * 5 2 1 32 32 H 1.09002 * 109.47077 * 285.00304 * 6 5 2 33 33 H 1.09005 * 109.47050 * 44.99641 * 6 5 2 34 34 H 1.09001 * 109.52319 * 302.30943 * 9 7 6 35 35 H 1.09006 * 109.52051 * 62.49823 * 9 7 6 36 36 H 1.09005 * 109.50478 * 297.71664 * 10 9 7 37 37 H 1.08995 * 109.53503 * 177.61438 * 10 9 7 38 38 H 1.09002 * 109.46259 * 180.80137 * 11 10 9 39 39 H 1.09000 * 109.45807 * 60.84057 * 11 10 9 40 40 H 1.08000 * 120.26203 * 0.02562 * 14 13 12 41 41 H 1.07995 * 120.66383 * 180.22317 * 15 14 13 42 42 H 1.07999 * 120.43058 * 179.76948 * 16 15 14 43 43 H 0.97005 * 119.99761 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.46562 * 178.24079 * 27 12 11 45 45 H 1.08998 * 109.46705 * 58.26764 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4908 6 6 1.8908 -1.9706 1.8508 7 6 2.6876 -2.3831 3.0900 8 1 2.5084 -1.6676 3.8926 9 6 4.1807 -2.4102 2.7522 10 6 4.9653 -2.8815 3.9797 11 6 4.4577 -4.2614 4.4045 12 7 3.0253 -4.1824 4.7175 13 6 2.5612 -5.3857 5.2313 14 6 3.1812 -5.9415 6.3542 15 6 2.7136 -7.1408 6.8683 16 6 1.6457 -7.7601 6.2428 17 6 1.0678 -7.1535 5.1141 18 6 -0.0235 -7.7739 4.4653 19 1 -0.4113 -8.7108 4.8371 20 6 -0.6023 -7.1739 3.3402 21 7 -0.1326 -6.0400 2.8897 22 14 -2.0454 -7.9937 2.4830 23 1 -3.3157 -7.5141 3.0842 24 1 -2.0217 -7.6523 1.0379 25 1 -1.9460 -9.4665 2.6454 26 7 1.5441 -5.9932 4.6503 27 6 2.2460 -3.7775 3.5406 28 1 -0.3634 0.3787 -0.9553 29 1 -0.3633 -1.0168 0.1497 30 1 -0.3633 0.6380 0.8056 31 1 2.6920 -0.0237 2.1256 32 1 0.8242 -2.0406 2.0645 33 1 2.1394 -2.6334 1.0218 34 1 4.3543 -3.0965 1.9234 35 1 4.5091 -1.4091 2.4723 36 1 4.8226 -2.1740 4.7966 37 1 6.0251 -2.9437 3.7331 38 1 5.0046 -4.5937 5.2869 39 1 4.6135 -4.9714 3.5922 40 1 4.0157 -5.4385 6.8200 41 1 3.1760 -7.5852 7.7371 42 1 1.2609 -8.6971 6.6173 43 1 -0.5338 -5.6242 2.1105 44 1 1.1865 -3.7582 3.7956 45 1 2.4120 -4.4897 2.7324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771659016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:42 Heat of formation + Delta-G solvation = -56.832739 kcal Electronic energy + Delta-G solvation = -27997.751809 eV Core-core repulsion = 24141.130442 eV Total energy + Delta-G solvation = -3856.621367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.02141 -39.22191 -38.12203 -37.00768 -36.72631 -35.37288 -33.93069 -32.46938 -31.72452 -30.56204 -30.23687 -27.60035 -26.49142 -25.24378 -23.50618 -22.71234 -21.88052 -20.80777 -20.16786 -19.32187 -18.47264 -17.94098 -17.28324 -17.07382 -16.58427 -16.36852 -16.21875 -15.82698 -15.56584 -15.42427 -15.33623 -14.85077 -14.40339 -14.09085 -14.07247 -13.90251 -13.75872 -13.69403 -13.46273 -13.24098 -13.15188 -13.03841 -12.84429 -12.80885 -12.65891 -12.46092 -12.28145 -12.01761 -11.93943 -11.79178 -11.64543 -11.31500 -11.28598 -11.13398 -10.43404 -10.30442 -9.87818 -9.47402 -8.72387 -8.25813 -6.46608 -0.62315 0.92207 1.21204 1.42853 1.53250 1.55817 1.80557 2.24874 2.80495 2.90668 3.04376 3.32857 3.74182 3.85920 3.95808 4.03938 4.07850 4.16461 4.21536 4.23948 4.42174 4.53331 4.59029 4.62238 4.67279 4.77388 4.86348 4.91433 4.94792 4.95442 5.00229 5.03806 5.06577 5.17818 5.24959 5.27884 5.32888 5.45509 5.57844 5.70486 5.92126 6.02819 6.07057 6.17616 6.37557 6.54431 6.82013 7.09942 8.20661 8.47918 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.003806 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.552127 B = 7355.989441 C = 9634.592725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.628 3.372 3 O -0.996 6.996 4 O -1.003 7.003 5 N -1.110 6.110 6 C 0.125 3.875 7 C -0.084 4.084 8 H 0.093 0.907 9 C -0.115 4.115 10 C -0.106 4.106 11 C 0.062 3.938 12 N -0.477 5.477 13 C 0.305 3.695 14 C -0.326 4.326 15 C -0.043 4.043 16 C -0.323 4.323 17 C 0.242 3.758 18 C -0.467 4.467 19 H 0.082 0.918 20 C 0.032 3.968 21 N -0.738 5.738 22 Si 0.979 3.021 23 H -0.264 1.264 24 H -0.267 1.267 25 H -0.263 1.263 26 N -0.530 5.530 27 C 0.099 3.901 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.150 0.850 31 H 0.424 0.576 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.015 0.985 40 H 0.118 0.882 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.278 0.722 44 H 0.067 0.933 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 12.244 -4.092 13.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.724 3.276 3 O -0.986 6.986 4 O -0.993 6.993 5 N -0.870 5.870 6 C -0.002 4.002 7 C -0.105 4.105 8 H 0.111 0.889 9 C -0.153 4.153 10 C -0.144 4.144 11 C -0.064 4.064 12 N -0.195 5.195 13 C 0.067 3.933 14 C -0.350 4.350 15 C -0.067 4.067 16 C -0.346 4.346 17 C 0.115 3.885 18 C -0.499 4.499 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.360 5.360 22 Si 0.800 3.200 23 H -0.189 1.189 24 H -0.192 1.192 25 H -0.187 1.187 26 N -0.249 5.249 27 C -0.030 4.030 28 H 0.163 0.837 29 H 0.157 0.843 30 H 0.169 0.831 31 H 0.261 0.739 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.033 0.967 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.121 0.879 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 1.907 13.305 -5.462 14.508 hybrid contribution -0.614 -1.648 0.610 1.861 sum 1.294 11.657 -4.851 12.692 Atomic orbital electron populations 1.30365 1.24080 1.13260 1.13384 1.04030 0.78854 0.72185 0.72525 1.93563 1.79824 1.39042 1.86219 1.93569 1.79056 1.62713 1.63935 1.55260 1.74775 1.20866 1.36125 1.21201 0.99833 0.81429 0.97725 1.21376 0.95553 0.96388 0.97145 0.88884 1.21667 0.93987 1.02169 0.97440 1.21588 0.99852 0.94617 0.98303 1.22224 0.86016 0.98483 0.99684 1.59148 1.04599 1.24778 1.31010 1.20353 0.92381 0.88673 0.91896 1.21031 1.08707 1.01536 1.03740 1.21093 0.94197 0.94024 0.97424 1.21812 1.04869 1.04234 1.03666 1.18791 0.91838 0.88383 0.89462 1.19885 1.12259 1.07041 1.10693 0.89945 1.26791 1.00145 0.95136 0.97045 1.70185 1.34441 1.13593 1.17760 0.85253 0.77704 0.79395 0.77617 1.18860 1.19165 1.18682 1.68641 1.14450 1.10667 1.31126 1.21549 0.97712 0.94107 0.89602 0.83721 0.84272 0.83143 0.73945 0.90106 0.91342 0.93252 0.89542 0.90099 0.89312 0.90063 0.96676 0.86358 0.85180 0.87875 0.91090 0.91456 0.96271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -6.92 10.89 113.37 1.23 -5.68 16 2 S 2.63 48.02 6.10 -56.49 -0.34 47.68 16 3 O -1.00 -23.98 18.08 -127.65 -2.31 -26.29 16 4 O -1.00 -27.44 17.50 -127.65 -2.23 -29.67 16 5 N -1.11 -19.19 5.46 -187.49 -1.02 -20.21 16 6 C 0.13 2.79 5.52 86.38 0.48 3.26 16 7 C -0.08 -2.19 2.38 -10.74 -0.03 -2.22 16 8 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 9 C -0.12 -2.73 5.14 30.67 0.16 -2.58 16 10 C -0.11 -2.50 6.09 30.65 0.19 -2.31 16 11 C 0.06 2.02 5.24 86.33 0.45 2.47 16 12 N -0.48 -18.64 4.68 -701.89 -3.28 -21.92 16 13 C 0.31 14.49 6.42 133.42 0.86 15.35 16 14 C -0.33 -14.38 9.20 22.73 0.21 -14.17 16 15 C -0.04 -1.90 10.15 22.39 0.23 -1.67 16 16 C -0.32 -16.07 9.83 22.87 0.22 -15.84 16 17 C 0.24 13.28 6.55 40.18 0.26 13.54 16 18 C -0.47 -24.98 9.14 23.46 0.21 -24.76 16 19 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 20 C 0.03 1.55 5.50 85.29 0.47 2.02 16 21 N -0.74 -36.67 11.46 21.84 0.25 -36.42 16 22 Si 0.98 36.87 29.56 68.60 2.03 38.89 16 23 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 24 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 26 N -0.53 -28.34 6.16 -186.59 -1.15 -29.48 16 27 C 0.10 3.68 3.93 86.33 0.34 4.02 16 28 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.42 6.00 8.36 -96.75 -0.81 5.19 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.73 7.69 -2.38 -0.02 1.71 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.66 7.63 -2.38 -0.02 1.64 16 36 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 2.53 6.64 -2.39 -0.02 2.51 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.12 4.56 7.11 -2.91 -0.02 4.54 16 41 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 43 H 0.28 12.34 8.29 -92.70 -0.77 11.57 16 44 H 0.07 2.90 7.70 -2.39 -0.02 2.88 16 45 H 0.02 0.82 8.11 -2.39 -0.02 0.80 16 Total: -1.00 -73.27 375.04 -2.59 -75.85 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.19 Total: 30.15 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 5.29 Total: -28.58 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -5.20 Total: -108.04 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -4.54 Total: -55.96 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.89 kcal Atomic # 16 Polarization: 48.02 SS G_CDS: -0.34 Total: 47.68 kcal Total: -73.27 -2.59 -75.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771659016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.022 kcal (2) G-P(sol) polarization free energy of solvation -73.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds