Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 N 1.46497 * 109.47420 * 185.70874 * 3 2 1 5 5 C 1.36895 * 119.99794 * 278.69099 * 4 3 2 6 6 H 1.08001 * 119.99806 * 180.48461 * 5 4 3 7 7 C 1.39029 * 119.99963 * 0.47887 * 5 4 3 8 8 N 1.31383 * 119.99786 * 9.79482 * 7 5 4 9 9 Si 1.86792 * 120.00039 * 189.79111 * 7 5 4 10 10 H 1.48496 * 109.47528 * 90.00378 * 9 7 5 11 11 H 1.48501 * 109.47196 * 210.00460 * 9 7 5 12 12 H 1.48499 * 109.47395 * 330.00184 * 9 7 5 13 13 C 1.34778 * 120.00256 * 98.69131 * 4 3 2 14 14 O 1.21622 * 120.00107 * 186.37592 * 13 4 3 15 15 C 1.47519 * 119.99846 * 6.38170 * 13 4 3 16 16 C 1.39796 * 120.08327 * 134.80631 * 15 13 4 17 17 C 1.37675 * 119.91974 * 179.72666 * 16 15 13 18 18 C 1.39105 * 120.08159 * 0.25220 * 17 16 15 19 19 N 1.39734 * 119.91665 * 180.02562 * 18 17 16 20 20 N 1.39913 * 125.83760 * 324.68707 * 19 18 17 21 21 C 1.30355 * 109.25019 * 179.87704 * 20 19 18 22 22 C 1.41441 * 108.38852 * 0.38195 * 21 20 19 23 23 C 1.43205 * 126.47865 * 179.75398 * 22 21 20 24 24 N 8.65427 * 90.09459 * 150.51950 * 15 1 2 25 25 C 1.35865 * 125.83652 * 145.00104 * 19 18 17 26 26 N 1.38104 * 126.51221 * 359.93846 * 25 19 18 27 27 C 1.39104 * 120.16615 * 0.02562 * 18 17 16 28 28 C 1.37684 * 120.08184 * 0.02562 * 27 18 17 29 29 H 1.08996 * 109.46971 * 299.99462 * 1 2 3 30 30 H 1.08995 * 109.47242 * 60.00016 * 1 2 3 31 31 H 1.09007 * 109.46786 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47461 * 240.00167 * 2 1 3 33 33 H 1.08998 * 109.47741 * 119.99893 * 2 1 3 34 34 H 1.08996 * 109.47030 * 65.70190 * 3 2 1 35 35 H 1.09004 * 109.46943 * 305.70708 * 3 2 1 36 36 H 0.97004 * 119.99417 * 179.97438 * 8 7 5 37 37 H 1.08001 * 120.04054 * 359.97438 * 16 15 13 38 38 H 1.07997 * 119.96251 * 180.27552 * 17 16 15 39 39 H 1.08001 * 125.80233 * 180.11263 * 21 20 19 40 40 H 0.97007 * 119.99768 * 359.97438 * 26 25 19 41 41 H 0.96997 * 120.00969 * 180.02562 * 26 25 19 42 42 H 1.08000 * 119.95958 * 180.02562 * 27 18 17 43 43 H 1.07997 * 120.04135 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4985 1.4449 -0.1374 5 6 4.2895 1.2280 0.9586 6 1 5.3649 1.2376 0.8588 7 6 3.7086 0.9957 2.2002 8 7 2.4138 0.7928 2.2919 9 14 4.7690 0.9721 3.7378 10 1 4.8459 2.3414 4.3072 11 1 4.1697 0.0529 4.7383 12 1 6.1345 0.5032 3.3903 13 6 4.0615 1.6605 -1.3428 14 8 5.2646 1.5480 -1.4809 15 6 3.2185 2.0330 -2.4946 16 6 3.6105 3.0729 -3.3427 17 6 2.8239 3.4140 -4.4199 18 6 1.6378 2.7288 -4.6620 19 7 0.8424 3.0775 -5.7566 20 7 0.6587 4.3712 -6.2567 21 6 -0.1431 4.3253 -7.2835 22 6 -0.5262 2.9796 -7.4905 23 6 -1.4034 2.4917 -8.5119 24 7 -2.0983 2.1034 -9.3228 25 6 0.1104 2.2190 -6.5137 26 7 0.0161 0.8514 -6.3463 27 6 1.2415 1.6973 -3.8170 28 6 2.0224 1.3512 -2.7371 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.7624 1.9260 0.9366 35 1 1.5956 1.9850 -0.8345 36 1 2.0086 0.6303 3.1582 37 1 4.5312 3.6054 -3.1554 38 1 3.1283 4.2143 -5.0781 39 1 -0.4639 5.1715 -7.8728 40 1 0.5040 0.4157 -5.6299 41 1 -0.5373 0.3263 -6.9454 42 1 0.3201 1.1672 -4.0083 43 1 1.7143 0.5500 -2.0818 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066240989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = 133.547313 kcal Electronic energy + Delta-G solvation = -28633.799013 eV Core-core repulsion = 24682.281944 eV Total energy + Delta-G solvation = -3951.517069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86152 -39.75434 -37.89663 -36.47758 -35.64362 -35.36390 -33.51943 -32.42035 -31.59373 -30.88141 -29.38663 -29.20701 -26.11084 -25.05970 -23.68615 -23.32164 -21.97401 -21.13525 -20.83971 -19.74908 -19.11749 -17.81880 -17.23726 -16.80503 -16.38607 -16.09626 -15.86906 -15.02763 -14.75745 -14.65940 -14.27042 -14.08304 -13.88340 -13.69864 -13.39826 -13.34940 -13.15572 -12.98460 -12.66565 -12.57362 -12.35109 -12.05970 -11.87933 -11.71099 -11.48652 -11.19941 -11.07059 -10.90449 -10.84598 -10.52613 -10.42937 -10.28984 -10.02484 -9.88015 -9.04851 -8.89239 -8.67179 -8.25990 -8.16229 -7.92925 -6.40655 -3.97120 0.72769 1.38524 1.64315 1.84124 2.03828 2.58695 3.03148 3.14799 3.18292 3.19617 3.43504 3.47062 3.91322 3.97394 4.09337 4.57328 4.64163 4.65716 4.76739 4.92983 5.00828 5.18510 5.33261 5.42465 5.50564 5.55811 5.83570 5.89131 5.95486 6.01514 6.11128 6.16975 6.29038 6.32033 6.40032 6.50625 6.63345 6.73454 6.75982 6.82043 6.83497 7.12381 7.22242 7.44623 7.45595 7.54999 7.65212 7.88411 8.33431 8.98304 9.22225 9.77642 10.43853 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.002695 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.734779 B =10386.720032 C =11160.104548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.108 3.892 4 N -0.424 5.424 5 C -0.289 4.289 6 H 0.108 0.892 7 C 0.023 3.977 8 N -0.867 5.867 9 Si 0.934 3.066 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.461 3.539 14 O -0.591 6.591 15 C -0.080 4.080 16 C -0.062 4.062 17 C -0.108 4.108 18 C 0.137 3.863 19 N -0.333 5.333 20 N -0.286 5.286 21 C 0.131 3.869 22 C -0.268 4.268 23 C 0.302 3.698 24 N -0.454 5.454 25 C 0.434 3.566 26 N -0.834 5.834 27 C -0.150 4.150 28 C -0.086 4.086 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.041 0.959 32 H 0.029 0.971 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.040 0.960 36 H 0.268 0.732 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.198 0.802 40 H 0.413 0.587 41 H 0.420 0.580 42 H 0.127 0.873 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.356 1.720 -10.477 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.014 4.014 4 N -0.139 5.139 5 C -0.417 4.417 6 H 0.126 0.874 7 C -0.178 4.178 8 N -0.508 5.508 9 Si 0.761 3.239 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.251 3.749 14 O -0.478 6.478 15 C -0.085 4.085 16 C -0.082 4.082 17 C -0.128 4.128 18 C 0.046 3.954 19 N -0.113 5.113 20 N -0.101 5.101 21 C -0.061 4.061 22 C -0.289 4.289 23 C -0.012 4.012 24 N -0.132 5.132 25 C 0.199 3.801 26 N -0.382 5.382 27 C -0.171 4.171 28 C -0.105 4.105 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.215 0.785 40 H 0.246 0.754 41 H 0.252 0.748 42 H 0.145 0.855 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.191 1.805 -10.729 13.042 hybrid contribution -0.063 -0.786 0.606 0.995 sum -7.254 1.020 -10.123 12.495 Atomic orbital electron populations 1.21641 0.97284 1.00079 1.00772 1.22119 0.93797 0.98253 1.02155 1.22159 0.79634 0.97198 1.02455 1.43827 1.06334 1.57453 1.06275 1.19923 0.92406 1.44492 0.84866 0.87416 1.25347 0.96475 0.96526 0.99492 1.70100 1.09676 1.46051 1.24934 0.85778 0.79745 0.78268 0.80139 1.20236 1.20799 1.19369 1.17691 0.87597 0.86949 0.82699 1.90641 1.14594 1.58806 1.83772 1.20446 0.94871 0.96096 0.97055 1.21131 0.99153 0.95430 0.92498 1.20808 0.92335 1.00757 0.98891 1.17457 0.91399 0.98950 0.87557 1.45449 1.37275 1.04274 1.24328 1.77392 1.22783 0.95707 1.14252 1.23813 0.93122 0.95381 0.93828 1.15115 1.16309 0.93480 1.04011 1.24365 0.91563 0.93498 0.91754 1.81298 1.12750 1.07472 1.11680 1.18127 0.89300 0.83484 0.89203 1.41920 1.55039 1.02296 1.38989 1.20812 1.00973 0.99580 0.95688 1.21916 0.92886 1.00081 0.95612 0.92476 0.94515 0.94017 0.95267 0.87277 0.86338 0.94176 0.92080 0.84411 0.84609 0.78541 0.75384 0.74761 0.85516 0.82773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.87 37.16 0.37 -1.73 16 2 C -0.13 -2.32 4.67 -26.73 -0.12 -2.45 16 3 C 0.11 2.20 4.16 -4.04 -0.02 2.18 16 4 N -0.42 -9.97 2.64 -116.00 -0.31 -10.28 16 5 C -0.29 -7.35 9.49 -15.00 -0.14 -7.49 16 6 H 0.11 2.92 7.19 -52.49 -0.38 2.54 16 7 C 0.02 0.55 5.33 -17.45 -0.09 0.46 16 8 N -0.87 -19.69 7.19 55.50 0.40 -19.29 16 9 Si 0.93 19.06 29.56 -169.99 -5.03 14.03 16 10 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 C 0.46 10.69 7.22 -12.48 -0.09 10.60 16 14 O -0.59 -15.76 16.58 5.26 0.09 -15.68 16 15 C -0.08 -1.47 5.13 -104.95 -0.54 -2.01 16 16 C -0.06 -1.00 9.68 -39.20 -0.38 -1.38 16 17 C -0.11 -1.49 9.73 -39.47 -0.38 -1.87 16 18 C 0.14 1.79 6.38 -83.61 -0.53 1.26 16 19 N -0.33 -3.98 3.73 -9.34 -0.03 -4.01 16 20 N -0.29 -3.38 12.21 30.88 0.38 -3.00 16 21 C 0.13 1.21 11.98 -16.96 -0.20 1.01 16 22 C -0.27 -2.67 6.01 -106.39 -0.64 -3.31 16 23 C 0.30 3.26 15.57 -22.46 -0.35 2.91 16 24 N -0.45 -5.77 18.54 41.85 0.78 -4.99 16 25 C 0.43 4.40 7.75 -152.81 -1.18 3.22 16 26 N -0.83 -6.16 8.64 31.59 0.27 -5.89 16 27 C -0.15 -1.86 8.40 -39.46 -0.33 -2.20 16 28 C -0.09 -1.31 7.36 -39.20 -0.29 -1.59 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.03 0.53 6.34 -51.93 -0.33 0.20 16 33 H 0.11 2.36 5.88 -51.93 -0.31 2.05 16 34 H 0.12 2.65 5.79 -51.93 -0.30 2.35 16 35 H 0.04 0.74 4.92 -51.93 -0.26 0.49 16 36 H 0.27 5.83 8.31 -40.82 -0.34 5.49 16 37 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.14 1.69 8.05 -52.49 -0.42 1.26 16 39 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.41 2.82 6.18 -40.82 -0.25 2.57 16 41 H 0.42 2.37 8.68 -40.82 -0.35 2.02 16 42 H 0.13 1.24 6.27 -52.49 -0.33 0.91 16 43 H 0.16 2.37 3.66 -52.49 -0.19 2.18 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -29.35 360.94 -7.31 -36.66 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.37 Total: 9.41 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -4.93 Total: -2.39 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 1.48 Total: -47.47 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.09 Total: -15.68 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.35 -7.31 -36.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066240989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.206 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds