Wall clock time and date at job start Sat Apr 11 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 N 1.46497 * 109.47420 * 185.70874 * 3 2 1 5 5 C 1.36895 * 119.99794 * 278.69099 * 4 3 2 6 6 H 1.08001 * 119.99806 * 180.48461 * 5 4 3 7 7 C 1.39029 * 119.99963 * 0.47887 * 5 4 3 8 8 N 1.31383 * 119.99786 * 9.79482 * 7 5 4 9 9 Si 1.86792 * 120.00039 * 189.79111 * 7 5 4 10 10 H 1.48496 * 109.47528 * 90.00378 * 9 7 5 11 11 H 1.48501 * 109.47196 * 210.00460 * 9 7 5 12 12 H 1.48499 * 109.47395 * 330.00184 * 9 7 5 13 13 C 1.34778 * 120.00256 * 98.69131 * 4 3 2 14 14 O 1.21622 * 120.00107 * 186.37592 * 13 4 3 15 15 C 1.47519 * 119.99846 * 6.38170 * 13 4 3 16 16 C 1.39796 * 120.08327 * 134.80631 * 15 13 4 17 17 C 1.37675 * 119.91974 * 179.72666 * 16 15 13 18 18 C 1.39105 * 120.08159 * 0.25220 * 17 16 15 19 19 N 1.39734 * 119.91665 * 180.02562 * 18 17 16 20 20 N 1.39913 * 125.83760 * 324.68707 * 19 18 17 21 21 C 1.30355 * 109.25019 * 179.87704 * 20 19 18 22 22 C 1.41441 * 108.38852 * 0.38195 * 21 20 19 23 23 C 1.43205 * 126.47865 * 179.75398 * 22 21 20 24 24 N 8.65427 * 90.09459 * 150.51950 * 15 1 2 25 25 C 1.35865 * 125.83652 * 145.00104 * 19 18 17 26 26 N 1.38104 * 126.51221 * 359.93846 * 25 19 18 27 27 C 1.39104 * 120.16615 * 0.02562 * 18 17 16 28 28 C 1.37684 * 120.08184 * 0.02562 * 27 18 17 29 29 H 1.08996 * 109.46971 * 299.99462 * 1 2 3 30 30 H 1.08995 * 109.47242 * 60.00016 * 1 2 3 31 31 H 1.09007 * 109.46786 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47461 * 240.00167 * 2 1 3 33 33 H 1.08998 * 109.47741 * 119.99893 * 2 1 3 34 34 H 1.08996 * 109.47030 * 65.70190 * 3 2 1 35 35 H 1.09004 * 109.46943 * 305.70708 * 3 2 1 36 36 H 0.97004 * 119.99417 * 179.97438 * 8 7 5 37 37 H 1.08001 * 120.04054 * 359.97438 * 16 15 13 38 38 H 1.07997 * 119.96251 * 180.27552 * 17 16 15 39 39 H 1.08001 * 125.80233 * 180.11263 * 21 20 19 40 40 H 0.97007 * 119.99768 * 359.97438 * 26 25 19 41 41 H 0.96997 * 120.00969 * 180.02562 * 26 25 19 42 42 H 1.08000 * 119.95958 * 180.02562 * 27 18 17 43 43 H 1.07997 * 120.04135 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4985 1.4449 -0.1374 5 6 4.2895 1.2280 0.9586 6 1 5.3649 1.2376 0.8588 7 6 3.7086 0.9957 2.2002 8 7 2.4138 0.7928 2.2919 9 14 4.7690 0.9721 3.7378 10 1 4.8459 2.3414 4.3072 11 1 4.1697 0.0529 4.7383 12 1 6.1345 0.5032 3.3903 13 6 4.0615 1.6605 -1.3428 14 8 5.2646 1.5480 -1.4809 15 6 3.2185 2.0330 -2.4946 16 6 3.6105 3.0729 -3.3427 17 6 2.8239 3.4140 -4.4199 18 6 1.6378 2.7288 -4.6620 19 7 0.8424 3.0775 -5.7566 20 7 0.6587 4.3712 -6.2567 21 6 -0.1431 4.3253 -7.2835 22 6 -0.5262 2.9796 -7.4905 23 6 -1.4034 2.4917 -8.5119 24 7 -2.0983 2.1034 -9.3228 25 6 0.1104 2.2190 -6.5137 26 7 0.0161 0.8514 -6.3463 27 6 1.2415 1.6973 -3.8170 28 6 2.0224 1.3512 -2.7371 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.7624 1.9260 0.9366 35 1 1.5956 1.9850 -0.8345 36 1 2.0086 0.6303 3.1582 37 1 4.5312 3.6054 -3.1554 38 1 3.1283 4.2143 -5.0781 39 1 -0.4639 5.1715 -7.8728 40 1 0.5040 0.4157 -5.6299 41 1 -0.5373 0.3263 -6.9454 42 1 0.3201 1.1672 -4.0083 43 1 1.7143 0.5500 -2.0818 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066240989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:17 Heat of formation + Delta-G solvation = 117.401549 kcal Electronic energy + Delta-G solvation = -28634.499146 eV Core-core repulsion = 24682.281944 eV Total energy + Delta-G solvation = -3952.217202 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.71734 -41.20344 -39.28554 -37.40474 -37.36520 -36.12557 -34.70236 -33.87050 -33.28422 -32.07033 -30.52621 -30.01119 -27.70982 -26.54603 -24.94170 -24.34499 -22.96170 -22.32679 -22.12856 -21.22052 -19.96638 -18.97168 -18.66447 -18.34361 -17.28519 -17.22466 -16.81037 -16.50894 -16.03744 -15.94381 -15.89191 -15.29084 -15.23178 -14.80936 -14.63814 -14.35461 -14.30199 -14.06690 -13.80441 -13.74672 -13.58459 -13.45647 -13.36812 -13.07298 -12.69229 -12.46574 -12.42369 -12.23762 -12.14561 -12.06769 -11.85091 -11.77723 -11.53785 -11.00416 -10.69488 -10.46303 -10.12475 -9.69041 -9.30670 -9.01024 -8.19819 -5.86766 -0.37883 0.23776 0.74591 0.96993 1.24433 1.39021 1.44325 1.54111 1.74761 1.96254 2.24866 2.46424 2.63062 2.66326 3.01173 3.12867 3.18179 3.63124 3.74156 3.85099 3.86727 4.02841 4.20691 4.40233 4.41656 4.46969 4.49311 4.59465 4.69895 4.87717 4.89541 5.03594 5.05844 5.12699 5.32402 5.33550 5.38742 5.39661 5.48371 5.53264 5.70141 5.73935 6.03105 6.09595 6.14063 6.30120 6.53592 6.71171 6.72844 7.14922 7.44501 7.99324 8.61216 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.002695 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.734779 B =10386.720032 C =11160.104548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.118 4.118 3 C 0.114 3.886 4 N -0.434 5.434 5 C -0.337 4.337 6 H 0.074 0.926 7 C 0.003 3.997 8 N -0.861 5.861 9 Si 0.989 3.011 10 H -0.273 1.273 11 H -0.268 1.268 12 H -0.281 1.281 13 C 0.451 3.549 14 O -0.643 6.643 15 C -0.111 4.111 16 C -0.065 4.065 17 C -0.104 4.104 18 C 0.155 3.845 19 N -0.348 5.348 20 N -0.315 5.315 21 C 0.148 3.852 22 C -0.273 4.273 23 C 0.324 3.676 24 N -0.488 5.488 25 C 0.438 3.562 26 N -0.819 5.819 27 C -0.133 4.133 28 C -0.080 4.080 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.274 0.726 37 H 0.129 0.871 38 H 0.151 0.849 39 H 0.232 0.768 40 H 0.418 0.582 41 H 0.430 0.570 42 H 0.162 0.838 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.262 1.811 -11.984 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.156 4.156 3 C -0.008 4.008 4 N -0.149 5.149 5 C -0.464 4.464 6 H 0.092 0.908 7 C -0.200 4.200 8 N -0.500 5.500 9 Si 0.813 3.187 10 H -0.198 1.198 11 H -0.193 1.193 12 H -0.206 1.206 13 C 0.242 3.758 14 O -0.534 6.534 15 C -0.115 4.115 16 C -0.085 4.085 17 C -0.124 4.124 18 C 0.063 3.937 19 N -0.128 5.128 20 N -0.130 5.130 21 C -0.044 4.044 22 C -0.294 4.294 23 C 0.011 3.989 24 N -0.167 5.167 25 C 0.203 3.797 26 N -0.369 5.369 27 C -0.153 4.153 28 C -0.099 4.099 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.147 0.853 38 H 0.168 0.832 39 H 0.248 0.752 40 H 0.252 0.748 41 H 0.265 0.735 42 H 0.179 0.821 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.172 1.868 -12.246 16.029 hybrid contribution 0.753 -0.784 0.903 1.413 sum -9.418 1.084 -11.344 14.784 Atomic orbital electron populations 1.21558 0.94118 1.01538 1.01611 1.21945 0.96421 0.96486 1.00700 1.22168 0.78019 0.98512 1.02088 1.44021 1.07470 1.57394 1.06011 1.19718 0.91514 1.48449 0.86754 0.90755 1.25902 0.97745 0.95506 1.00839 1.70209 1.09848 1.44320 1.25613 0.84990 0.77892 0.78412 0.77382 1.19847 1.19309 1.20623 1.18491 0.87622 0.85887 0.83806 1.90574 1.17068 1.60801 1.84914 1.20106 0.96235 0.98678 0.96475 1.21074 0.99342 0.95131 0.92982 1.20857 0.92284 1.01134 0.98076 1.17518 0.90785 0.97948 0.87405 1.45362 1.37946 1.04956 1.24554 1.77421 1.24347 0.95660 1.15588 1.24424 0.91193 0.96101 0.92661 1.15108 1.16482 0.93896 1.03903 1.24306 0.90865 0.92554 0.91171 1.81338 1.13982 1.08564 1.12815 1.18283 0.88463 0.84222 0.88737 1.41979 1.54523 1.01371 1.39011 1.20981 1.01300 0.99088 0.93980 1.21815 0.91920 0.99602 0.96584 0.93239 0.92026 0.92258 0.94915 0.90552 0.88520 0.92082 0.91551 0.85332 0.83166 0.75159 0.74807 0.73542 0.82062 0.82851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.87 71.98 0.71 -2.89 16 2 C -0.12 -4.31 4.67 30.59 0.14 -4.17 16 3 C 0.11 4.69 4.16 86.38 0.36 5.05 16 4 N -0.43 -21.50 2.64 -639.16 -1.69 -23.19 16 5 C -0.34 -18.21 9.49 84.09 0.80 -17.41 16 6 H 0.07 4.40 7.19 -2.91 -0.02 4.38 16 7 C 0.00 0.12 5.33 84.95 0.45 0.58 16 8 N -0.86 -39.64 7.19 21.68 0.16 -39.48 16 9 Si 0.99 40.04 29.56 68.60 2.03 42.07 16 10 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 13 C 0.45 22.11 7.22 86.69 0.63 22.73 16 14 O -0.64 -36.89 16.58 -4.10 -0.07 -36.96 16 15 C -0.11 -4.12 5.13 -20.08 -0.10 -4.22 16 16 C -0.07 -2.12 9.68 22.51 0.22 -1.90 16 17 C -0.10 -2.69 9.73 22.35 0.22 -2.47 16 18 C 0.16 3.60 6.38 38.30 0.24 3.85 16 19 N -0.35 -7.10 3.73 -183.48 -0.68 -7.78 16 20 N -0.31 -6.40 12.21 -56.22 -0.69 -7.09 16 21 C 0.15 2.19 11.98 85.70 1.03 3.21 16 22 C -0.27 -4.43 6.01 -21.01 -0.13 -4.56 16 23 C 0.32 6.01 15.57 88.33 1.38 7.39 16 24 N -0.49 -11.27 18.54 19.01 0.35 -10.92 16 25 C 0.44 7.23 7.75 132.32 1.03 8.26 16 26 N -0.82 -8.87 8.64 -53.98 -0.47 -9.33 16 27 C -0.13 -2.87 8.40 22.35 0.19 -2.69 16 28 C -0.08 -2.32 7.36 22.52 0.17 -2.15 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.39 8.13 -2.39 -0.02 1.38 16 31 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.03 1.16 6.34 -2.38 -0.02 1.15 16 33 H 0.08 3.34 5.88 -2.39 -0.01 3.32 16 34 H 0.10 4.40 5.79 -2.39 -0.01 4.39 16 35 H 0.06 2.22 4.92 -2.39 -0.01 2.21 16 36 H 0.27 11.82 8.31 -92.71 -0.77 11.05 16 37 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 38 H 0.15 3.45 8.05 -2.91 -0.02 3.43 16 39 H 0.23 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.42 3.94 6.18 -92.70 -0.57 3.37 16 41 H 0.43 3.22 8.68 -92.71 -0.81 2.41 16 42 H 0.16 2.36 6.27 -2.91 -0.02 2.34 16 43 H 0.15 4.47 3.66 -2.91 -0.01 4.46 16 Total: -1.00 -68.36 360.94 6.00 -62.35 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.26 Total: 21.71 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 7.32 Total: 8.62 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -3.02 Total: -97.80 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.07 Total: -36.96 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -68.36 6.00 -62.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066240989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.755 kcal (2) G-P(sol) polarization free energy of solvation -68.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds