Wall clock time and date at job start Sat Apr 11 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47262 * 2 1 4 4 N 1.31030 * 126.15729 * 89.97597 * 3 2 1 5 5 N 1.28748 * 110.16725 * 179.97438 * 4 3 2 6 6 C 1.32362 * 109.23133 * 359.97438 * 5 4 3 7 7 C 1.40804 * 133.77579 * 180.02562 * 6 5 4 8 8 C 1.35909 * 119.13306 * 179.97438 * 7 6 5 9 9 C 1.40873 * 120.10038 * 359.97438 * 8 7 6 10 10 N 1.39093 * 119.59465 * 180.02562 * 9 8 7 11 11 C 1.46503 * 119.99468 * 0.02562 * 10 9 8 12 12 C 1.50701 * 109.46929 * 180.02562 * 11 10 9 13 13 C 1.38295 * 119.93297 * 89.99901 * 12 11 10 14 14 C 1.38099 * 120.06865 * 180.25412 * 13 12 11 15 15 C 1.38882 * 119.93206 * 359.47410 * 14 13 12 16 16 O 1.35746 * 120.07145 * 180.25590 * 15 14 13 17 17 C 1.34834 * 117.00340 * 174.73672 * 16 15 14 18 18 H 1.08003 * 119.99155 * 5.05417 * 17 16 15 19 19 C 1.38652 * 120.00189 * 185.05311 * 17 16 15 20 20 N 1.31551 * 120.00092 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99829 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46814 * 60.00203 * 21 19 17 23 23 H 1.48500 * 109.47169 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47317 * 300.00038 * 21 19 17 25 25 C 1.38876 * 119.85943 * 0.52538 * 15 14 13 26 26 C 1.38100 * 119.93177 * 359.72571 * 25 15 14 27 27 N 1.31245 * 120.81884 * 0.30214 * 9 8 7 28 28 N 1.34987 * 126.15487 * 269.94495 * 3 2 1 29 29 H 1.08998 * 109.47392 * 300.00358 * 1 2 3 30 30 H 1.09005 * 109.46835 * 60.00205 * 1 2 3 31 31 H 1.08994 * 109.47278 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47223 * 239.99114 * 2 1 3 33 33 H 1.09005 * 109.46835 * 119.99795 * 2 1 3 34 34 H 1.07997 * 120.43508 * 359.93893 * 7 6 5 35 35 H 1.08000 * 119.95287 * 180.02562 * 8 7 6 36 36 H 0.96997 * 120.00677 * 180.02562 * 10 9 8 37 37 H 1.08996 * 109.47074 * 60.00393 * 11 10 9 38 38 H 1.09003 * 109.47105 * 299.99547 * 11 10 9 39 39 H 1.08000 * 119.96836 * 359.97438 * 13 12 11 40 40 H 1.08002 * 120.03655 * 179.72759 * 14 13 12 41 41 H 0.97006 * 120.00187 * 180.02562 * 20 19 17 42 42 H 1.07996 * 120.03796 * 179.70626 * 25 15 14 43 43 H 1.07997 * 119.96864 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2897 2.1498 1.0579 5 7 2.7029 3.3164 0.7033 6 6 2.7293 3.3865 -0.6182 7 6 3.0877 4.3949 -1.5333 8 6 2.9998 4.1410 -2.8656 9 6 2.5556 2.8827 -3.3172 10 7 2.4702 2.6340 -4.6831 11 6 2.8416 3.6774 -5.6421 12 6 2.6597 3.1579 -7.0450 13 6 1.4468 3.3205 -7.6892 14 6 1.2754 2.8409 -8.9729 15 6 2.3260 2.2045 -9.6209 16 8 2.1622 1.7366 -10.8846 17 6 3.2514 1.2277 -11.4950 18 1 4.1793 1.1306 -10.9509 19 6 3.1803 0.8292 -12.8211 20 7 2.0502 0.9480 -13.4840 21 14 4.6897 0.1248 -13.6669 22 1 5.1349 -1.0964 -12.9486 23 1 4.3535 -0.2223 -15.0711 24 1 5.7803 1.1325 -13.6532 25 6 3.5427 2.0428 -8.9713 26 6 3.7063 2.5200 -7.6857 27 7 2.2162 1.9439 -2.4652 28 7 2.2989 2.1713 -1.0899 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.4274 5.3576 -1.1812 35 1 3.2717 4.9047 -3.5792 36 1 2.1648 1.7699 -5.0006 37 1 3.8842 3.9562 -5.4899 38 1 2.2064 4.5506 -5.4932 39 1 0.6314 3.8190 -7.1863 40 1 0.3265 2.9643 -9.4738 41 1 2.0004 0.6688 -14.4117 42 1 4.3602 1.5441 -9.4708 43 1 4.6521 2.3942 -7.1799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068699851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:25 Heat of formation + Delta-G solvation = 119.827062 kcal Electronic energy + Delta-G solvation = -27028.182224 eV Core-core repulsion = 23076.070201 eV Total energy + Delta-G solvation = -3952.112023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.33638 -40.90923 -40.18032 -38.57032 -36.45692 -35.70820 -34.34445 -33.83938 -32.74790 -31.80787 -30.53177 -30.30553 -27.63364 -26.27368 -25.78756 -24.96283 -23.83987 -23.64556 -22.28933 -21.88311 -19.89880 -19.53913 -19.27245 -18.81702 -17.81733 -17.65187 -16.54057 -16.51910 -16.19592 -15.91750 -15.59902 -15.45706 -15.38457 -15.22518 -14.89941 -14.63829 -14.55603 -14.36301 -14.16250 -13.75732 -13.63658 -13.38172 -13.30561 -12.99781 -12.63301 -12.50409 -12.41250 -12.28361 -12.21667 -12.18656 -12.14379 -11.78977 -11.57655 -11.28106 -11.19207 -10.81824 -9.79951 -9.68159 -9.30477 -9.02950 -8.49444 -6.17757 -0.57370 0.27467 0.37779 0.59833 0.77886 1.35050 1.44591 1.50708 1.53088 2.15946 2.16056 2.18399 2.83193 2.92282 3.14684 3.23151 3.45311 3.49669 3.58103 3.84112 3.94543 4.05283 4.14844 4.18480 4.25395 4.40666 4.48617 4.52388 4.57317 4.63250 4.67805 4.73276 4.81997 4.92093 4.92762 5.05257 5.06720 5.13816 5.16952 5.25739 5.27874 5.53564 5.70067 5.71200 5.73887 6.00830 6.19008 6.29917 6.74102 6.95458 7.33027 7.75148 8.73012 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020852 B = 0.001854 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.459356 B =15102.692524 C =15536.245024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 C 0.195 3.805 4 N -0.297 5.297 5 N -0.291 5.291 6 C 0.108 3.892 7 C 0.002 3.998 8 C -0.158 4.158 9 C 0.416 3.584 10 N -0.686 5.686 11 C 0.183 3.817 12 C -0.185 4.185 13 C -0.039 4.039 14 C -0.211 4.211 15 C 0.122 3.878 16 O -0.231 6.231 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.017 2.983 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.256 1.256 25 C -0.250 4.250 26 C -0.042 4.042 27 N -0.378 5.378 28 N -0.277 5.277 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.203 0.797 35 H 0.203 0.797 36 H 0.411 0.589 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.152 0.848 40 H 0.110 0.890 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 5.646 21.103 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.071 4.071 4 N -0.142 5.142 5 N -0.139 5.139 6 C -0.148 4.148 7 C -0.025 4.025 8 C -0.186 4.186 9 C 0.150 3.850 10 N -0.322 5.322 11 C 0.062 3.938 12 C -0.186 4.186 13 C -0.058 4.058 14 C -0.231 4.231 15 C 0.070 3.930 16 O -0.137 6.137 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.556 5.556 21 Si 0.836 3.164 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.180 1.180 25 C -0.269 4.269 26 C -0.060 4.060 27 N -0.211 5.211 28 N -0.051 5.051 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.132 0.868 34 H 0.220 0.780 35 H 0.219 0.781 36 H 0.247 0.753 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.170 0.830 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.474 5.242 22.142 22.888 hybrid contribution 0.318 -0.537 -2.273 2.357 sum 2.792 4.704 19.869 20.608 Atomic orbital electron populations 1.21681 0.92717 1.03815 1.01479 1.20170 0.97292 0.84082 1.05553 1.25122 1.03839 0.99004 0.79179 1.74435 1.17143 0.99277 1.23322 1.74799 1.19026 1.12662 1.07393 1.23122 1.07650 0.90467 0.93589 1.20851 0.93778 0.98118 0.89753 1.21832 1.02851 0.96992 0.96910 1.19597 0.88049 0.90513 0.86884 1.44947 1.69722 1.18696 0.98788 1.20440 1.02749 0.89032 0.81577 1.19457 0.94350 1.07864 0.96922 1.20955 0.97409 0.95658 0.91764 1.20489 0.98159 1.06657 0.97770 1.20070 0.95191 0.92134 0.85558 1.83944 1.36876 1.69008 1.23858 1.21780 0.90110 1.41606 0.95412 0.87868 1.26577 1.02062 0.97418 0.95978 1.70168 1.27826 1.46509 1.11124 0.84671 0.75667 0.78965 0.77106 1.18222 1.19859 1.18033 1.21273 0.97771 1.09665 0.98203 1.21022 0.99210 0.93537 0.92231 1.75503 1.35735 1.26335 0.83545 1.47074 1.42118 1.11204 1.04720 0.92524 0.94025 0.88861 0.88950 0.86764 0.78009 0.78051 0.75300 0.88133 0.87925 0.83035 0.87151 0.91818 0.86548 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.90 71.98 0.71 -1.43 16 2 C -0.03 -0.55 6.56 29.85 0.20 -0.36 16 3 C 0.19 4.93 7.52 137.99 1.04 5.97 16 4 N -0.30 -8.68 12.21 -50.19 -0.61 -9.30 16 5 N -0.29 -8.39 12.33 -55.41 -0.68 -9.07 16 6 C 0.11 2.58 7.99 134.07 1.07 3.65 16 7 C 0.00 0.03 10.11 22.36 0.23 0.25 16 8 C -0.16 -1.65 9.25 22.37 0.21 -1.45 16 9 C 0.42 6.82 7.75 133.80 1.04 7.86 16 10 N -0.69 -9.70 5.73 -348.03 -1.99 -11.69 16 11 C 0.18 2.03 5.01 85.63 0.43 2.46 16 12 C -0.18 -3.88 5.25 -19.83 -0.10 -3.98 16 13 C -0.04 -1.00 9.69 22.25 0.22 -0.78 16 14 C -0.21 -7.78 9.99 22.39 0.22 -7.55 16 15 C 0.12 5.45 6.65 22.58 0.15 5.60 16 16 O -0.23 -13.10 9.76 -22.74 -0.22 -13.32 16 17 C -0.41 -22.81 9.49 67.92 0.64 -22.16 16 18 H 0.10 5.16 5.20 -2.91 -0.02 5.14 16 19 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 20 N -0.92 -54.55 13.67 21.61 0.30 -54.26 16 21 Si 1.02 40.93 29.55 68.60 2.03 42.96 16 22 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 25 C -0.25 -9.41 9.17 22.39 0.21 -9.20 16 26 C -0.04 -1.09 9.69 22.25 0.22 -0.87 16 27 N -0.38 -8.58 11.96 -54.82 -0.66 -9.24 16 28 N -0.28 -6.97 4.02 -184.32 -0.74 -7.71 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.20 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.20 0.34 6.69 -2.91 -0.02 0.32 16 36 H 0.41 6.88 8.58 -92.71 -0.80 6.08 16 37 H 0.10 0.69 7.87 -2.39 -0.02 0.67 16 38 H 0.10 0.67 7.87 -2.39 -0.02 0.65 16 39 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 40 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 41 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 42 H 0.12 4.59 5.64 -2.91 -0.02 4.57 16 43 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -78.87 373.16 4.62 -74.25 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.27 Total: 20.15 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 6.93 Total: -22.76 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -4.39 Total: -101.27 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.22 Total: -13.32 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -78.87 4.62 -74.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068699851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.074 kcal (2) G-P(sol) polarization free energy of solvation -78.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds