Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31506 * 118.67691 * 2 1 4 4 C 1.33194 * 120.68556 * 179.97438 * 3 2 1 5 5 C 1.40866 * 118.83287 * 359.97438 * 4 3 2 6 6 C 1.41166 * 107.03074 * 180.02562 * 5 4 3 7 7 N 1.30245 * 108.46914 * 359.97438 * 6 5 4 8 8 N 1.36315 * 134.61666 * 179.97438 * 4 3 2 9 9 C 1.46503 * 125.87070 * 359.97438 * 8 4 3 10 10 C 1.40816 * 118.26944 * 0.03119 * 5 4 3 11 11 N 1.38108 * 120.81400 * 179.97438 * 10 5 4 12 12 C 1.46508 * 119.99923 * 180.02562 * 11 10 5 13 13 C 1.50698 * 109.46930 * 179.97438 * 12 11 10 14 14 C 1.38297 * 119.93202 * 89.99834 * 13 12 11 15 15 C 1.38101 * 120.07230 * 180.02562 * 14 13 12 16 16 C 1.38886 * 119.92536 * 359.97438 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47375 * 119.99795 * 22 20 18 25 25 H 1.48506 * 109.47301 * 239.99793 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 N 1.32127 * 118.67855 * 180.29115 * 2 1 3 29 29 H 1.09004 * 109.47342 * 90.00259 * 1 2 3 30 30 H 1.08998 * 109.47481 * 210.00155 * 1 2 3 31 31 H 1.09003 * 109.47390 * 330.00341 * 1 2 3 32 32 H 1.08002 * 125.76439 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.46862 * 90.00364 * 9 8 4 34 34 H 1.09001 * 109.46684 * 209.99568 * 9 8 4 35 35 H 1.08993 * 109.47552 * 329.99937 * 9 8 4 36 36 H 0.96994 * 119.99992 * 359.97438 * 11 10 5 37 37 H 1.09003 * 109.46889 * 59.99647 * 12 11 10 38 38 H 1.09004 * 109.46798 * 299.99803 * 12 11 10 39 39 H 1.07999 * 119.96698 * 0.02562 * 14 13 12 40 40 H 1.07992 * 120.03608 * 179.97438 * 15 14 13 41 41 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 43 43 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1380 1.1538 0.0000 4 6 3.4691 1.2004 0.0005 5 6 4.1913 -0.0090 0.0016 6 6 5.5621 0.3280 0.0025 7 7 5.6679 1.6261 0.0015 8 7 4.3919 2.2037 0.0002 9 6 4.0993 3.6392 -0.0014 10 6 3.4684 -1.2174 0.0014 11 7 4.1230 -2.4335 0.0019 12 6 3.3531 -3.6799 0.0012 13 6 4.2979 -4.8540 0.0013 14 6 4.7300 -5.3919 1.1999 15 6 5.5963 -6.4674 1.2034 16 6 6.0331 -7.0091 0.0015 17 8 6.8842 -8.0667 0.0016 18 6 7.1771 -8.6165 1.1973 19 1 6.8059 -8.1644 2.1051 20 6 7.9550 -9.7626 1.2615 21 7 8.4068 -10.3137 0.1556 22 14 8.3602 -10.5249 2.9180 23 1 7.7364 -9.7202 3.9990 24 1 7.8336 -11.9124 2.9665 25 1 9.8332 -10.5476 3.1055 26 6 5.6016 -6.4634 -1.2005 27 6 4.7308 -5.3915 -1.1972 28 7 2.1410 -1.1592 -0.0059 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 6.3843 -0.3724 0.0031 33 1 4.0261 3.9962 1.0259 34 1 4.8993 4.1724 -0.5151 35 1 3.1552 3.8171 -0.5160 36 1 5.0925 -2.4623 0.0020 37 1 2.7257 -3.7189 -0.8894 38 1 2.7242 -3.7190 0.8907 39 1 4.3896 -4.9704 2.1342 40 1 5.9336 -6.8867 2.1397 41 1 8.9513 -11.1152 0.2005 42 1 5.9430 -6.8797 -2.1367 43 1 4.3913 -4.9695 -2.1315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068906447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = 97.987889 kcal Electronic energy + Delta-G solvation = -27276.633212 eV Core-core repulsion = 23323.574170 eV Total energy + Delta-G solvation = -3953.059041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.95769 -40.86027 -40.08519 -38.77804 -37.21738 -34.60313 -34.23156 -33.26533 -32.79380 -31.81302 -30.85844 -29.00794 -28.03605 -27.53006 -26.11511 -24.02425 -23.63515 -23.44121 -22.12343 -21.77111 -19.87992 -19.44750 -18.83216 -18.43466 -17.91156 -17.16630 -16.79572 -16.49521 -16.25150 -15.63677 -15.57741 -15.52817 -15.19095 -15.13214 -15.03264 -14.61820 -14.55212 -14.37133 -13.99048 -13.74483 -13.52854 -13.51013 -13.13654 -13.02266 -12.87141 -12.53751 -12.46817 -12.42437 -12.20718 -12.20307 -12.08500 -11.65220 -11.18919 -10.82756 -10.55964 -10.21330 -9.93341 -9.79885 -9.01169 -8.99811 -8.48494 -6.16428 -0.21710 0.42532 0.53638 0.59397 1.14818 1.36089 1.41801 1.43068 1.53733 2.08855 2.16859 2.83685 2.84332 3.07164 3.10461 3.18210 3.49911 3.58630 3.68259 3.89156 3.92479 4.05752 4.19007 4.27717 4.37987 4.43970 4.50384 4.58394 4.63181 4.72388 4.82858 4.83942 4.84670 4.92004 5.06528 5.15448 5.21660 5.28123 5.38515 5.53252 5.61704 5.70456 5.76584 5.88310 6.01992 6.08752 6.18814 6.36499 6.62108 6.96665 7.35558 7.76294 8.74510 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.002033 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.084370 B =13767.595421 C =14403.116029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.397 3.603 3 N -0.596 5.596 4 C 0.351 3.649 5 C -0.357 4.357 6 C 0.113 3.887 7 N -0.281 5.281 8 N -0.391 5.391 9 C 0.106 3.894 10 C 0.516 3.484 11 N -0.678 5.678 12 C 0.195 3.805 13 C -0.184 4.184 14 C -0.043 4.043 15 C -0.245 4.245 16 C 0.123 3.877 17 O -0.230 6.230 18 C -0.411 4.411 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.919 5.919 22 Si 1.018 2.982 23 H -0.251 1.251 24 H -0.270 1.270 25 H -0.269 1.269 26 C -0.206 4.206 27 C -0.041 4.041 28 N -0.617 5.617 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.222 0.778 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.420 0.580 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.139 0.861 40 H 0.119 0.881 41 H 0.273 0.727 42 H 0.113 0.887 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.163 23.556 1.118 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.126 3.874 3 N -0.327 5.327 4 C 0.104 3.896 5 C -0.375 4.375 6 C -0.083 4.083 7 N -0.096 5.096 8 N -0.180 5.180 9 C -0.034 4.034 10 C 0.262 3.738 11 N -0.307 5.307 12 C 0.073 3.927 13 C -0.185 4.185 14 C -0.061 4.061 15 C -0.264 4.264 16 C 0.072 3.928 17 O -0.136 6.136 18 C -0.487 4.487 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.557 5.557 22 Si 0.837 3.163 23 H -0.174 1.174 24 H -0.195 1.195 25 H -0.195 1.195 26 C -0.225 4.225 27 C -0.059 4.059 28 N -0.348 5.348 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.239 0.761 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.258 0.742 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.157 0.843 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.149 24.366 0.864 27.701 hybrid contribution 1.447 -1.388 0.478 2.061 sum -11.702 22.978 1.342 25.821 Atomic orbital electron populations 1.20689 0.82855 1.05075 1.05038 1.23530 0.98737 0.80946 0.84192 1.67416 1.05349 1.30962 1.28930 1.19195 0.89475 0.87978 0.92959 1.19741 0.96232 0.94716 1.26786 1.24112 0.95607 0.92942 0.95616 1.76945 0.99921 1.09942 1.22749 1.48560 1.00726 1.06611 1.62138 1.22073 1.03815 0.73164 1.04336 1.18148 0.88150 0.84661 0.82836 1.44877 1.09559 1.01817 1.74468 1.19985 0.91168 0.78239 1.03324 1.19517 1.05164 1.01131 0.92715 1.20950 0.93596 0.93125 0.98471 1.21246 1.05796 1.02104 0.97279 1.20012 0.89241 0.88115 0.95421 1.83947 1.55389 1.40611 1.33624 1.21861 1.33556 1.09710 0.83618 0.87878 1.26578 0.95911 0.95960 1.03611 1.70181 1.34538 1.21189 1.29756 0.84537 0.78524 0.78155 0.75078 1.17381 1.19481 1.19455 1.20454 1.04912 1.01856 0.95315 1.20891 0.93515 0.92923 0.98599 1.67990 1.06685 1.30091 1.30038 0.88094 0.88429 0.88640 0.76126 0.89981 0.87891 0.88495 0.74194 0.90066 0.90302 0.84303 0.86356 0.91826 0.86842 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.29 71.23 0.73 -0.29 16 2 C 0.40 8.74 7.63 138.73 1.06 9.80 16 3 N -0.60 -14.58 10.35 -185.93 -1.92 -16.50 16 4 C 0.35 8.88 8.04 134.15 1.08 9.96 16 5 C -0.36 -8.49 6.14 -21.29 -0.13 -8.62 16 6 C 0.11 2.31 11.87 85.65 1.02 3.33 16 7 N -0.28 -6.51 12.45 -56.46 -0.70 -7.21 16 8 N -0.39 -8.80 4.05 -366.68 -1.48 -10.28 16 9 C 0.11 1.47 11.47 127.77 1.47 2.94 16 10 C 0.52 11.89 7.55 133.64 1.01 12.90 16 11 N -0.68 -13.43 5.67 -347.70 -1.97 -15.40 16 12 C 0.20 4.02 5.85 85.63 0.50 4.52 16 13 C -0.18 -4.82 5.25 -19.84 -0.10 -4.92 16 14 C -0.04 -1.29 9.69 22.25 0.22 -1.07 16 15 C -0.25 -9.76 9.17 22.39 0.21 -9.55 16 16 C 0.12 5.72 6.65 22.58 0.15 5.87 16 17 O -0.23 -13.26 9.76 -22.72 -0.22 -13.48 16 18 C -0.41 -23.10 9.49 67.92 0.64 -22.46 16 19 H 0.10 5.29 5.20 -2.91 -0.02 5.27 16 20 C -0.02 -1.26 5.49 84.84 0.47 -0.80 16 21 N -0.92 -55.17 13.67 21.62 0.30 -54.88 16 22 Si 1.02 41.73 29.55 68.60 2.03 43.76 16 23 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 26 C -0.21 -8.00 9.99 22.39 0.22 -7.78 16 27 C -0.04 -1.18 9.69 22.25 0.22 -0.97 16 28 N -0.62 -14.48 9.58 -184.86 -1.77 -16.26 16 29 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.22 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.42 7.40 8.33 -92.71 -0.77 6.63 16 37 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 38 H 0.08 1.60 8.09 -2.39 -0.02 1.59 16 39 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.12 4.88 5.64 -2.91 -0.02 4.86 16 41 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 43 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -74.96 375.41 3.29 -71.67 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.30 Total: 25.73 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 8.75 Total: -7.14 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -7.56 Total: -120.53 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.22 Total: -13.48 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -74.96 3.29 -71.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068906447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.659 kcal (2) G-P(sol) polarization free energy of solvation -74.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds