Wall clock time and date at job start Sat Apr 11 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47151 * 2 1 4 4 N 1.30134 * 121.06212 * 89.97129 * 3 2 1 5 5 S 1.69941 * 105.76175 * 179.97438 * 4 3 2 6 6 C 1.72297 * 94.57673 * 0.02562 * 5 4 3 7 7 N 1.38320 * 127.50317 * 179.97438 * 6 5 4 8 8 C 1.48072 * 110.99983 * 236.07018 * 7 6 5 9 9 C 1.50749 * 112.93715 * 84.34972 * 8 7 6 10 10 C 1.54516 * 108.94124 * 92.64938 * 9 8 7 11 11 N 1.40082 * 111.50808 * 283.99326 * 10 9 8 12 12 C 1.46902 * 110.99625 * 188.14696 * 11 10 9 13 13 C 1.50702 * 109.47027 * 169.99731 * 12 11 10 14 14 O 1.21293 * 120.00255 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72353 * 13 12 11 16 16 C 1.37101 * 120.00327 * 180.27606 * 15 13 12 17 17 H 1.08001 * 119.99426 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00412 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00325 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46636 * 60.00069 * 20 18 16 22 22 H 1.48498 * 109.47594 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47124 * 300.00305 * 20 18 16 24 24 C 1.47685 * 114.57699 * 61.45240 * 11 10 9 25 25 C 1.47741 * 111.00151 * 3.67045 * 7 6 5 26 26 N 1.31280 * 121.06052 * 270.26835 * 3 2 1 27 27 H 1.08999 * 109.46863 * 300.00169 * 1 2 3 28 28 H 1.08998 * 109.46590 * 59.99938 * 1 2 3 29 29 H 1.08996 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47518 * 239.99690 * 2 1 3 31 31 H 1.09008 * 109.46945 * 119.99651 * 2 1 3 32 32 H 1.08999 * 108.78978 * 323.46162 * 8 7 6 33 33 H 1.08997 * 108.70128 * 205.18010 * 8 7 6 34 34 H 1.09001 * 109.55421 * 332.81775 * 9 8 7 35 35 H 1.08998 * 109.64861 * 212.54487 * 9 8 7 36 36 H 1.08995 * 109.07060 * 163.46552 * 10 9 8 37 37 H 1.09003 * 109.01708 * 44.47620 * 10 9 8 38 38 H 1.09004 * 109.47131 * 49.99975 * 12 11 10 39 39 H 1.08994 * 109.47471 * 289.99724 * 12 11 10 40 40 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 41 41 H 0.96996 * 120.00330 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.73245 * 38.33298 * 24 11 10 43 43 H 1.08993 * 109.74269 * 159.03396 * 24 11 10 44 44 H 1.09003 * 108.99534 * 313.44051 * 25 7 6 45 45 H 1.08997 * 108.99280 * 72.26271 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2557 2.0541 1.1147 5 16 2.8030 3.5992 0.6663 6 6 2.6964 3.2968 -1.0266 7 7 3.0039 4.1655 -2.0581 8 6 1.8487 4.3386 -2.9682 9 6 0.8747 5.3846 -2.4888 10 6 1.2469 6.7441 -3.1219 11 7 2.3660 7.3115 -2.4992 12 6 2.5942 8.6826 -2.9744 13 6 3.6419 9.3439 -2.1164 14 8 4.1490 8.7329 -1.1995 15 7 4.0198 10.6121 -2.3717 16 6 4.9770 11.2119 -1.5947 17 1 5.4285 10.6678 -0.7783 18 6 5.3662 12.5195 -1.8575 19 7 4.8165 13.1817 -2.8506 20 14 6.6699 13.3368 -0.7984 21 1 7.9340 12.5622 -0.8837 22 1 6.9036 14.7215 -1.2814 23 1 6.2080 13.3767 0.6124 24 6 3.5991 6.5049 -2.5987 25 6 3.5468 5.4365 -1.5361 26 7 2.2532 2.0612 -1.1246 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.3258 3.3863 -3.0567 33 1 2.2189 4.6280 -3.9517 34 1 0.9270 5.4613 -1.4028 35 1 -0.1365 5.1078 -2.7869 36 1 0.4016 7.4254 -3.0250 37 1 1.4649 6.5956 -4.1795 38 1 1.6643 9.2480 -2.9128 39 1 2.9356 8.6564 -4.0092 40 1 3.6145 11.1007 -3.1051 41 1 5.0879 14.0947 -3.0339 42 1 3.6575 6.0418 -3.5837 43 1 4.4693 7.1413 -2.4383 44 1 2.9163 5.7817 -0.7166 45 1 4.5547 5.2633 -1.1589 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076185079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:33 Heat of formation + Delta-G solvation = 42.225235 kcal Electronic energy + Delta-G solvation = -27342.896579 eV Core-core repulsion = 23522.863439 eV Total energy + Delta-G solvation = -3820.033140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.74131 -39.82898 -38.17673 -36.25597 -34.00071 -33.49559 -32.52420 -31.56145 -31.27785 -29.33605 -27.26962 -25.72428 -25.50999 -24.09943 -23.02572 -21.10052 -20.56696 -19.45424 -19.30557 -18.92695 -17.94220 -17.11757 -16.50844 -16.10318 -15.80792 -15.31879 -15.04442 -14.73508 -14.50220 -14.28220 -14.08861 -14.07251 -13.68220 -13.34263 -13.11261 -12.83881 -12.59451 -12.38209 -12.28892 -11.86279 -11.77577 -11.57242 -11.52681 -11.42165 -11.34587 -11.28185 -11.22905 -10.95974 -10.77100 -10.58171 -10.47638 -10.26012 -9.80911 -9.51491 -9.43992 -8.52079 -8.50113 -8.03872 -7.95710 -6.46823 -3.87887 0.39260 1.00905 1.65262 2.43725 2.87871 3.16605 3.23273 3.27178 3.81099 3.87336 4.04830 4.17153 4.53316 4.64030 4.76261 4.84225 4.87363 4.95917 5.03345 5.12546 5.16197 5.19930 5.34341 5.37906 5.42371 5.49951 5.53608 5.54515 5.66781 5.69699 5.72041 5.75188 5.83844 5.90903 5.94045 6.03730 6.18031 6.20193 6.36839 6.49368 7.11864 7.49686 7.51392 7.56312 8.00390 8.54893 9.12255 9.48025 9.98516 10.70543 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022919 B = 0.002414 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.387754 B =11596.327301 C =12448.895614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.035 4.035 3 C 0.286 3.714 4 N -0.495 5.495 5 S 0.195 5.805 6 C 0.282 3.718 7 N -0.440 5.440 8 C 0.063 3.937 9 C -0.149 4.149 10 C 0.074 3.926 11 N -0.540 5.540 12 C 0.053 3.947 13 C 0.440 3.560 14 O -0.579 6.579 15 N -0.561 5.561 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.067 3.933 25 C 0.056 3.944 26 N -0.544 5.544 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.024 0.976 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.044 0.956 43 H 0.118 0.882 44 H 0.080 0.920 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.261 -19.419 -1.914 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.005 4.005 4 N -0.327 5.327 5 S 0.333 5.667 6 C -0.096 4.096 7 N -0.160 5.160 8 C -0.064 4.064 9 C -0.188 4.188 10 C -0.055 4.055 11 N -0.265 5.265 12 C -0.078 4.078 13 C 0.225 3.775 14 O -0.463 6.463 15 N -0.197 5.197 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.059 4.059 25 C -0.070 4.070 26 N -0.273 5.273 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.136 0.864 44 H 0.098 0.902 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.532 -19.512 0.006 21.296 hybrid contribution -0.010 0.701 -1.272 1.452 sum -8.542 -18.811 -1.266 20.699 Atomic orbital electron populations 1.21704 0.93520 1.02470 1.02565 1.20172 0.96669 0.86600 1.04278 1.23326 0.95514 0.99194 0.82437 1.77462 1.26444 1.02658 1.26111 1.85403 1.61935 1.17705 1.01680 1.27027 0.93437 0.93283 0.95902 1.58321 1.30442 1.13601 1.13645 1.22219 0.88049 1.00658 0.95433 1.22094 0.99423 0.94913 1.02384 1.21051 0.93914 0.95567 0.95015 1.58466 1.04676 1.02242 1.61067 1.21791 1.00192 0.88973 0.96835 1.19717 0.86569 0.83351 0.87857 1.90495 1.58599 1.63982 1.33258 1.41877 1.36229 1.11255 1.30381 1.19641 1.15159 0.96003 1.12136 0.87883 1.25268 0.98841 0.96596 0.97174 1.69598 1.43135 1.12202 1.29238 0.85921 0.80600 0.77913 0.79823 1.19876 1.20993 1.19862 1.21941 0.94192 0.93922 0.95886 1.22380 1.01237 0.84448 0.98888 1.67351 1.24578 1.05644 1.29754 0.92339 0.92159 0.91347 0.88934 0.89232 0.89221 0.89087 0.90649 0.89730 0.90567 0.95860 0.89230 0.93180 0.77473 0.91770 0.93763 0.86389 0.90167 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.90 37.16 0.37 -0.72 16 2 C -0.03 -0.31 6.47 -27.88 -0.18 -0.49 16 3 C 0.29 3.63 6.82 -159.04 -1.08 2.54 16 4 N -0.50 -6.99 12.15 29.54 0.36 -6.63 16 5 S 0.19 2.68 21.94 -107.50 -2.36 0.33 16 6 C 0.28 3.78 6.80 -86.35 -0.59 3.20 16 7 N -0.44 -5.53 4.80 -175.53 -0.84 -6.38 16 8 C 0.06 0.66 5.12 -4.31 -0.02 0.64 16 9 C -0.15 -1.52 5.63 -27.06 -0.15 -1.67 16 10 C 0.07 0.83 4.96 -6.55 -0.03 0.80 16 11 N -0.54 -7.84 3.79 -241.15 -0.91 -8.75 16 12 C 0.05 0.84 5.46 -4.97 -0.03 0.81 16 13 C 0.44 9.51 7.22 -10.98 -0.08 9.43 16 14 O -0.58 -14.15 13.86 5.55 0.08 -14.08 16 15 N -0.56 -13.40 5.29 -10.96 -0.06 -13.46 16 16 C -0.30 -7.99 9.68 -14.93 -0.14 -8.14 16 17 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -23.77 13.05 55.50 0.72 -23.04 16 20 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C 0.07 0.97 4.67 -4.51 -0.02 0.95 16 25 C 0.06 0.77 4.42 -4.48 -0.02 0.75 16 26 N -0.54 -7.31 10.13 -14.58 -0.15 -7.46 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.09 0.93 7.48 -51.93 -0.39 0.54 16 33 H 0.09 0.89 6.51 -51.93 -0.34 0.55 16 34 H 0.07 0.92 7.02 -51.93 -0.36 0.55 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.80 7.83 -51.93 -0.41 0.40 16 37 H 0.02 0.24 7.59 -51.93 -0.39 -0.15 16 38 H 0.09 1.29 7.85 -51.93 -0.41 0.89 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.39 8.99 7.90 -40.82 -0.32 8.67 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.04 0.57 6.77 -51.93 -0.35 0.22 16 43 H 0.12 2.07 5.59 -51.93 -0.29 1.78 16 44 H 0.08 1.21 6.12 -51.93 -0.32 0.89 16 45 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -30.12 369.78 -11.17 -41.28 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.47 Total: 8.50 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -2.08 Total: 8.62 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.88 Total: -65.72 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.08 Total: -14.08 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.36 Total: 0.33 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.12 -11.17 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076185079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.510 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds