Wall clock time and date at job start Sat Apr 11 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46646 * 2 1 4 4 N 1.46496 * 109.46569 * 240.00241 * 2 1 3 5 5 C 1.39989 * 120.00142 * 85.00592 * 4 2 1 6 6 C 1.40425 * 125.97695 * 359.97438 * 5 4 2 7 7 C 1.35246 * 107.86345 * 179.97438 * 6 5 4 8 8 N 1.34959 * 107.86259 * 0.02562 * 7 6 5 9 9 C 1.46503 * 125.97345 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47016 * 124.99994 * 9 8 7 11 11 H 1.07999 * 119.99921 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99797 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99939 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99859 * 180.02562 * 12 10 9 15 15 H 1.48510 * 109.47097 * 59.99944 * 14 12 10 16 16 H 1.48496 * 109.47252 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47289 * 299.99933 * 14 12 10 18 18 N 1.31221 * 125.97572 * 179.68685 * 5 4 2 19 19 C 1.50696 * 109.46993 * 120.00004 * 2 1 3 20 20 O 1.21284 * 120.00037 * 119.99945 * 19 2 1 21 21 N 1.34775 * 120.00107 * 299.99771 * 19 2 1 22 22 C 1.39408 * 119.99800 * 184.49152 * 21 19 2 23 23 C 1.38788 * 120.16512 * 325.27155 * 22 21 19 24 24 C 1.38067 * 120.07565 * 180.25106 * 23 22 21 25 25 C 1.38535 * 120.40961 * 359.45048 * 24 23 22 26 26 C 1.37828 * 120.32153 * 0.55364 * 25 24 23 27 27 C 1.39701 * 119.91803 * 359.72559 * 26 25 24 28 28 C 1.43196 * 120.19890 * 180.02562 * 27 26 25 29 29 N 5.33872 * 96.37756 * 62.40918 * 2 1 3 30 30 H 1.09000 * 109.47031 * 300.00031 * 1 2 3 31 31 H 1.09003 * 109.47640 * 59.99847 * 1 2 3 32 32 H 1.08999 * 109.47345 * 179.97438 * 1 2 3 33 33 H 0.97003 * 119.99860 * 264.99528 * 4 2 1 34 34 H 1.08000 * 126.06389 * 0.02562 * 6 5 4 35 35 H 1.07995 * 126.06743 * 180.02562 * 7 6 5 36 36 H 1.08991 * 109.47175 * 245.00590 * 9 8 7 37 37 H 1.09003 * 109.46775 * 5.00612 * 9 8 7 38 38 H 0.97000 * 119.99864 * 180.02562 * 13 12 10 39 39 H 0.96993 * 120.00356 * 4.49806 * 21 19 2 40 40 H 1.07998 * 119.96474 * 359.97438 * 23 22 21 41 41 H 1.08003 * 119.79510 * 179.73049 * 24 23 22 42 42 H 1.07996 * 119.84201 * 180.27952 * 25 24 23 43 43 H 1.08007 * 120.04028 * 179.74621 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1520 0.0078 -2.4020 6 6 1.8557 1.3652 -2.6064 7 6 2.1179 1.6567 -3.9008 8 7 2.5625 0.5305 -4.4969 9 6 2.9621 0.3998 -5.9004 10 6 4.3625 -0.1519 -5.9746 11 1 4.9009 -0.3826 -5.0672 12 6 4.9565 -0.3622 -7.2010 13 7 4.3011 -0.0809 -8.3059 14 14 6.6921 -1.0468 -7.2931 15 1 6.7335 -2.3804 -6.6410 16 1 7.0972 -1.1791 -8.7156 17 1 7.6251 -0.1257 -6.5958 18 7 2.5811 -0.4901 -3.5377 19 6 2.0323 -0.7104 1.2304 20 8 2.7296 -1.6965 1.1192 21 7 1.7068 -0.2499 2.4545 22 6 2.2467 -0.8498 3.5912 23 6 2.4840 -2.2171 3.6122 24 6 3.0140 -2.8101 4.7408 25 6 3.3233 -2.0466 5.8546 26 6 3.0944 -0.6875 5.8520 27 6 2.5532 -0.0742 4.7194 28 6 2.3135 1.3375 4.7099 29 7 2.1231 2.4573 4.7023 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2489 -1.6317 -1.1527 34 1 1.4852 2.0542 -1.8619 35 1 1.9935 2.6197 -4.3735 36 1 2.2774 -0.2768 -6.4116 37 1 2.9313 1.3784 -6.3795 38 1 4.7188 -0.2292 -9.1687 39 1 1.0967 0.4987 2.5447 40 1 2.2497 -2.8186 2.7464 41 1 3.1928 -3.8752 4.7537 42 1 3.7417 -2.5193 6.7309 43 1 3.3334 -0.0972 6.7243 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:56 Heat of formation + Delta-G solvation = 112.469721 kcal Electronic energy + Delta-G solvation = -27239.351200 eV Core-core repulsion = 23286.920138 eV Total energy + Delta-G solvation = -3952.431062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29483 -40.24266 -39.24267 -36.83222 -35.96326 -35.36357 -33.47969 -31.84777 -31.78180 -30.37594 -29.66177 -28.74322 -26.50201 -25.07891 -24.31327 -23.18734 -22.69035 -20.92164 -20.20847 -19.67698 -19.32636 -18.03908 -17.56064 -16.54172 -16.43397 -15.96608 -15.88079 -15.54252 -15.06591 -14.75264 -14.51284 -14.41589 -14.19275 -14.01136 -13.96216 -13.57951 -13.28228 -13.15712 -12.81249 -12.78862 -12.56809 -12.31636 -12.21605 -12.10259 -12.05261 -11.90176 -11.55370 -10.99523 -10.94808 -10.78933 -10.24467 -10.17066 -10.05271 -9.63083 -9.43692 -9.31996 -8.73396 -8.58019 -7.95669 -7.09769 -6.19669 -4.24395 0.25061 0.79451 2.09913 2.19339 2.32373 2.53909 2.89064 3.20987 3.29404 3.32110 3.36268 3.38119 3.44004 3.69459 4.10197 4.13371 4.33576 4.37951 4.52709 4.78501 4.80343 4.87813 4.92481 4.94279 5.15156 5.26354 5.36393 5.49386 5.52847 5.63780 5.71714 5.85456 5.90262 5.97165 6.00280 6.20709 6.38295 6.43942 6.68800 6.77237 7.01579 7.03741 7.16731 7.53467 7.61874 7.75129 7.91473 8.12536 8.16149 8.78815 8.90784 9.41048 10.88709 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015902 B = 0.002127 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.380179 B =13163.231407 C =13973.453471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.159 3.841 3 H 0.107 0.893 4 N -0.711 5.711 5 C 0.307 3.693 6 C -0.336 4.336 7 C 0.069 3.931 8 N -0.325 5.325 9 C 0.260 3.740 10 C -0.526 4.526 11 H 0.068 0.932 12 C 0.061 3.939 13 N -0.897 5.897 14 Si 0.907 3.093 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.275 1.275 18 N -0.326 5.326 19 C 0.516 3.484 20 O -0.499 6.499 21 N -0.675 5.675 22 C 0.200 3.800 23 C -0.124 4.124 24 C -0.068 4.068 25 C -0.138 4.138 26 C -0.052 4.052 27 C -0.063 4.063 28 C 0.250 3.750 29 N -0.411 5.411 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.409 0.591 34 H 0.130 0.870 35 H 0.163 0.837 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.267 0.733 39 H 0.414 0.586 40 H 0.151 0.849 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 -1.206 28.268 29.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.048 3.952 3 H 0.125 0.875 4 N -0.355 5.355 5 C 0.051 3.949 6 C -0.370 4.370 7 C -0.084 4.084 8 N -0.104 5.104 9 C 0.142 3.858 10 C -0.564 4.564 11 H 0.086 0.914 12 C -0.141 4.141 13 N -0.535 5.535 14 Si 0.734 3.266 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.201 1.201 18 N -0.157 5.157 19 C 0.303 3.697 20 O -0.371 6.371 21 N -0.320 5.320 22 C 0.102 3.898 23 C -0.144 4.144 24 C -0.087 4.087 25 C -0.157 4.157 26 C -0.073 4.073 27 C -0.069 4.069 28 C -0.065 4.065 29 N -0.086 5.086 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.246 0.754 34 H 0.148 0.852 35 H 0.181 0.819 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.251 0.749 40 H 0.169 0.831 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.659 -1.057 27.121 28.201 hybrid contribution 0.553 0.158 0.330 0.663 sum -7.106 -0.899 27.450 28.369 Atomic orbital electron populations 1.22336 0.93554 1.03468 1.03304 1.20376 0.94928 0.97168 0.82756 0.87540 1.42940 1.76754 1.12129 1.03725 1.19047 0.98034 0.90719 0.87051 1.20715 1.23607 0.95338 0.97307 1.22340 0.99326 0.93173 0.93519 1.49046 1.46263 1.04710 1.10428 1.19674 0.96864 0.99074 0.70170 1.21230 0.98274 1.43678 0.93254 0.91351 1.24940 0.98758 0.95242 0.95183 1.69909 1.37869 1.48026 0.97738 0.86395 0.83463 0.79797 0.76897 1.19906 1.21088 1.20083 1.77480 1.28758 1.13158 0.96331 1.21172 0.79462 0.84731 0.84295 1.90730 1.35674 1.24773 1.85966 1.43502 1.47685 1.36430 1.04414 1.17665 0.95258 0.91699 0.85226 1.21350 1.00959 0.92251 0.99884 1.21366 0.94758 1.00697 0.91924 1.21104 1.01951 0.93303 0.99311 1.21018 0.95205 0.95121 0.95947 1.15842 1.09439 0.84611 0.96980 1.25593 0.94027 0.92606 0.94246 1.81313 1.08723 1.11563 1.06999 0.91891 0.89955 0.91512 0.75417 0.85227 0.81927 0.93869 0.92811 0.92348 0.74922 0.83094 0.84704 0.84746 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.40 37.16 0.35 -1.05 16 2 C 0.16 1.72 2.99 -69.08 -0.21 1.51 16 3 H 0.11 1.09 7.14 -51.93 -0.37 0.72 16 4 N -0.71 -10.92 5.16 -54.70 -0.28 -11.21 16 5 C 0.31 5.88 8.14 -154.55 -1.26 4.62 16 6 C -0.34 -5.79 9.92 -39.82 -0.40 -6.19 16 7 C 0.07 1.29 11.44 -17.24 -0.20 1.10 16 8 N -0.33 -7.52 3.67 -62.56 -0.23 -7.75 16 9 C 0.26 6.67 6.26 -5.19 -0.03 6.63 16 10 C -0.53 -14.91 9.23 -34.44 -0.32 -15.23 16 11 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 14 Si 0.91 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 N -0.33 -7.62 12.42 31.41 0.39 -7.23 16 19 C 0.52 5.47 7.06 -10.99 -0.08 5.40 16 20 O -0.50 -6.80 13.25 5.55 0.07 -6.72 16 21 N -0.67 -5.37 4.94 -9.67 -0.05 -5.42 16 22 C 0.20 1.62 6.31 -83.44 -0.53 1.09 16 23 C -0.12 -0.99 8.68 -39.44 -0.34 -1.33 16 24 C -0.07 -0.39 10.03 -39.53 -0.40 -0.78 16 25 C -0.14 -0.63 10.02 -39.62 -0.40 -1.03 16 26 C -0.05 -0.27 9.75 -39.19 -0.38 -0.66 16 27 C -0.06 -0.45 5.75 -106.65 -0.61 -1.07 16 28 C 0.25 2.18 14.41 -22.48 -0.32 1.86 16 29 N -0.41 -4.45 18.54 41.84 0.78 -3.67 16 30 H 0.06 0.34 7.47 -51.93 -0.39 -0.05 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.41 6.59 7.92 -40.82 -0.32 6.26 16 34 H 0.13 1.78 7.45 -52.49 -0.39 1.39 16 35 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 36 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 1.35 8.07 -51.93 -0.42 0.93 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 39 H 0.41 2.44 7.46 -40.82 -0.30 2.13 16 40 H 0.15 1.39 6.20 -52.49 -0.33 1.07 16 41 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 42 H 0.13 0.29 8.06 -52.49 -0.42 -0.13 16 43 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 LS Contribution 381.45 15.07 5.75 5.75 Total: -1.00 -34.18 381.45 -8.10 -42.28 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.03 Total: 5.60 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -5.22 Total: -3.49 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 1.34 Total: -60.23 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: 0.07 Total: -6.72 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.18 -8.10 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.751 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds