Wall clock time and date at job start Sat Apr 11 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47129 * 2 1 4 4 N 1.46499 * 109.46771 * 120.00107 * 2 1 3 5 5 C 1.39986 * 120.00228 * 274.99715 * 4 2 1 6 6 C 1.40430 * 125.97241 * 359.97438 * 5 4 2 7 7 C 1.35253 * 107.86270 * 179.97438 * 6 5 4 8 8 N 1.34962 * 107.86027 * 0.02562 * 7 6 5 9 9 C 1.46499 * 125.97165 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47419 * 124.99615 * 9 8 7 11 11 H 1.07999 * 119.99729 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00010 * 180.02562 * 10 9 8 13 13 N 1.31524 * 119.99732 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00339 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46652 * 89.99915 * 14 12 10 16 16 H 1.48493 * 109.47021 * 210.00008 * 14 12 10 17 17 H 1.48496 * 109.47029 * 330.00432 * 14 12 10 18 18 N 1.31224 * 125.97845 * 179.69667 * 5 4 2 19 19 C 1.50699 * 109.46969 * 240.00000 * 2 1 3 20 20 O 1.21283 * 120.00182 * 240.00006 * 19 2 1 21 21 N 1.34778 * 120.00276 * 60.00147 * 19 2 1 22 22 C 1.39405 * 120.00140 * 185.52763 * 21 19 2 23 23 C 1.38790 * 120.16098 * 24.84888 * 22 21 19 24 24 C 1.38069 * 120.07078 * 179.97438 * 23 22 21 25 25 C 1.38535 * 120.41353 * 359.97438 * 24 23 22 26 26 C 1.37838 * 120.32068 * 359.97438 * 25 24 23 27 27 C 1.39695 * 119.91853 * 0.02562 * 26 25 24 28 28 C 1.43195 * 120.20233 * 179.97438 * 27 26 25 29 29 N 5.47374 * 93.10853 * 293.91581 * 2 1 3 30 30 H 1.08994 * 109.47140 * 299.99746 * 1 2 3 31 31 H 1.09000 * 109.47262 * 60.00199 * 1 2 3 32 32 H 1.09004 * 109.47437 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99971 * 95.00518 * 4 2 1 34 34 H 1.08005 * 126.06891 * 0.02562 * 6 5 4 35 35 H 1.08000 * 126.06751 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47036 * 244.99779 * 9 8 7 37 37 H 1.09000 * 109.47319 * 4.99843 * 9 8 7 38 38 H 0.96994 * 119.99546 * 180.02562 * 13 12 10 39 39 H 0.96998 * 119.99746 * 5.52324 * 21 19 2 40 40 H 1.07999 * 119.96735 * 359.95577 * 23 22 21 41 41 H 1.08003 * 119.79583 * 180.02562 * 24 23 22 42 42 H 1.07992 * 119.84385 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.03740 * 179.74130 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1520 0.0076 2.4021 6 6 1.8566 1.3652 2.6062 7 6 2.1173 1.6564 3.9011 8 7 2.5613 0.5299 4.4973 9 6 2.9583 0.3986 5.9013 10 6 2.1720 -0.7151 6.5437 11 1 1.4492 -1.2698 5.9639 12 6 2.3755 -1.0257 7.8715 13 7 1.6896 -1.9980 8.4319 14 14 3.6262 -0.0667 8.8741 15 1 2.9627 1.1019 9.5061 16 1 4.1929 -0.9447 9.9292 17 1 4.7172 0.4052 7.9840 18 7 2.5704 -0.4931 3.5405 19 6 2.0323 -0.7104 -1.2305 20 8 2.7296 -1.6965 -1.1192 21 7 1.7067 -0.2500 -2.4546 22 6 2.0735 -0.9701 -3.5905 23 6 2.2908 -2.3385 -3.5086 24 6 2.6535 -3.0500 -4.6349 25 6 2.8027 -2.4069 -5.8528 26 6 2.5900 -1.0488 -5.9533 27 6 2.2227 -0.3155 -4.8224 28 6 2.0007 1.0958 -4.9197 29 7 1.8268 2.2158 -4.9964 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 1.4861 2.0544 1.8617 35 1 1.9923 2.6193 4.3739 36 1 4.0228 0.1714 5.9582 37 1 2.7578 1.3335 6.4246 38 1 1.8325 -2.2163 9.3661 39 1 1.2172 0.5825 -2.5452 40 1 2.1764 -2.8472 -2.5628 41 1 2.8211 -4.1147 -4.5662 42 1 3.0863 -2.9725 -6.7280 43 1 2.7118 -0.5514 -6.9042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:00 Heat of formation + Delta-G solvation = 119.864859 kcal Electronic energy + Delta-G solvation = -27208.361263 eV Core-core repulsion = 23256.250879 eV Total energy + Delta-G solvation = -3952.110384 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.36951 -40.33821 -39.26173 -36.86131 -36.02135 -35.41032 -33.45501 -31.93763 -31.78956 -30.57530 -29.78400 -28.83440 -26.92381 -25.10149 -24.35585 -23.11074 -22.47079 -20.96332 -20.22052 -19.71401 -19.37652 -18.03524 -17.62484 -16.93991 -16.50614 -16.07783 -15.81519 -15.56650 -15.10979 -14.82456 -14.54048 -14.44430 -14.43867 -13.97901 -13.66568 -13.57142 -13.33723 -13.28015 -13.03079 -12.84899 -12.59800 -12.49257 -12.32184 -12.22265 -12.04889 -11.98226 -11.79263 -11.12102 -11.04476 -10.71172 -10.45909 -10.15588 -9.82377 -9.70557 -9.44387 -9.37876 -8.73391 -8.66565 -8.03780 -7.15537 -6.20210 -4.21863 0.24797 0.79117 2.08000 2.15510 2.26784 2.52273 2.77987 3.10405 3.17753 3.24672 3.27565 3.36335 3.43073 3.62750 4.03101 4.04499 4.25611 4.32083 4.52585 4.77531 4.78951 4.87231 4.89140 4.93797 5.07569 5.26210 5.36315 5.40042 5.52322 5.60199 5.72506 5.78902 5.84744 5.97424 6.00936 6.12385 6.33770 6.38999 6.40828 6.63465 6.68663 6.91079 7.01104 7.32788 7.47653 7.56434 7.86522 8.08396 8.38499 8.75166 8.91433 9.35127 10.92606 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023398 B = 0.001967 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.384926 B =14229.591003 C =14877.364595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.159 3.841 3 H 0.107 0.893 4 N -0.710 5.710 5 C 0.310 3.690 6 C -0.332 4.332 7 C 0.068 3.932 8 N -0.325 5.325 9 C 0.233 3.767 10 C -0.531 4.531 11 H 0.086 0.914 12 C 0.075 3.925 13 N -0.888 5.888 14 Si 0.873 3.127 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.264 1.264 18 N -0.318 5.318 19 C 0.516 3.484 20 O -0.496 6.496 21 N -0.671 5.671 22 C 0.206 3.794 23 C -0.136 4.136 24 C -0.064 4.064 25 C -0.143 4.143 26 C -0.049 4.049 27 C -0.070 4.070 28 C 0.251 3.749 29 N -0.412 5.412 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.410 0.590 34 H 0.132 0.868 35 H 0.165 0.835 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.267 0.733 39 H 0.414 0.586 40 H 0.157 0.843 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 3.366 -28.911 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.047 3.953 3 H 0.124 0.876 4 N -0.355 5.355 5 C 0.054 3.946 6 C -0.365 4.365 7 C -0.083 4.083 8 N -0.104 5.104 9 C 0.114 3.886 10 C -0.569 4.569 11 H 0.104 0.896 12 C -0.129 4.129 13 N -0.526 5.526 14 Si 0.699 3.301 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.189 1.189 18 N -0.150 5.150 19 C 0.303 3.697 20 O -0.369 6.369 21 N -0.315 5.315 22 C 0.107 3.893 23 C -0.156 4.156 24 C -0.083 4.083 25 C -0.162 4.162 26 C -0.069 4.069 27 C -0.077 4.077 28 C -0.064 4.064 29 N -0.088 5.088 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.247 0.753 34 H 0.150 0.850 35 H 0.182 0.818 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.251 0.749 40 H 0.175 0.825 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.341 3.404 -27.917 28.125 hybrid contribution 0.190 0.907 0.193 0.947 sum -0.151 4.311 -27.723 28.057 Atomic orbital electron populations 1.22334 0.93325 1.03665 1.03375 1.20385 0.95050 0.97117 0.82707 0.87570 1.42948 1.76624 1.12196 1.03710 1.19054 0.98167 0.90546 0.86870 1.20741 1.23003 0.95479 0.97302 1.22340 0.99444 0.93109 0.93422 1.48585 1.47624 1.04553 1.09634 1.19988 0.97049 0.99122 0.72477 1.21114 1.23355 1.16522 0.95944 0.89614 1.24844 0.95750 0.94986 0.97295 1.69879 1.40647 1.29061 1.13004 0.86908 0.82137 0.80357 0.80703 1.19792 1.20572 1.18895 1.77550 1.29567 1.11963 0.95878 1.21180 0.79171 0.85025 0.84309 1.90704 1.34733 1.25472 1.85974 1.43538 1.56802 1.26529 1.04599 1.17717 0.95734 0.91248 0.84641 1.21467 1.01655 0.91290 1.01159 1.21371 0.94631 1.00620 0.91699 1.21093 1.02606 0.94047 0.98438 1.20999 0.95317 0.94054 0.96574 1.15740 1.12290 0.85003 0.94625 1.25608 0.93850 0.92589 0.94393 1.81317 1.09193 1.11605 1.06674 0.89873 0.91816 0.91417 0.75289 0.85006 0.81818 0.94186 0.93606 0.92245 0.74936 0.82539 0.84694 0.84788 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.40 37.16 0.35 -1.11 16 2 C 0.16 1.66 2.98 -69.08 -0.21 1.46 16 3 H 0.11 1.00 7.14 -51.93 -0.37 0.63 16 4 N -0.71 -10.71 5.16 -54.70 -0.28 -10.99 16 5 C 0.31 5.80 8.14 -154.55 -1.26 4.54 16 6 C -0.33 -5.49 9.92 -39.82 -0.40 -5.88 16 7 C 0.07 1.22 11.44 -17.24 -0.20 1.03 16 8 N -0.32 -7.25 3.67 -62.56 -0.23 -7.48 16 9 C 0.23 5.54 5.33 -5.19 -0.03 5.51 16 10 C -0.53 -15.10 9.78 -34.44 -0.34 -15.44 16 11 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 12 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 13 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 14 Si 0.87 20.29 27.47 -169.99 -4.67 15.62 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 18 N -0.32 -7.35 12.42 31.41 0.39 -6.96 16 19 C 0.52 5.28 7.02 -10.99 -0.08 5.20 16 20 O -0.50 -6.51 13.00 5.55 0.07 -6.44 16 21 N -0.67 -5.22 5.00 -9.66 -0.05 -5.27 16 22 C 0.21 1.63 6.43 -83.44 -0.54 1.10 16 23 C -0.14 -1.08 8.71 -39.44 -0.34 -1.42 16 24 C -0.06 -0.36 10.03 -39.53 -0.40 -0.76 16 25 C -0.14 -0.64 10.02 -39.62 -0.40 -1.04 16 26 C -0.05 -0.25 9.75 -39.18 -0.38 -0.63 16 27 C -0.07 -0.49 5.75 -106.65 -0.61 -1.10 16 28 C 0.25 2.09 14.26 -22.48 -0.32 1.77 16 29 N -0.41 -4.29 18.54 41.84 0.78 -3.51 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.36 7.70 -51.93 -0.40 -0.04 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.41 6.53 7.92 -40.82 -0.32 6.20 16 34 H 0.13 1.70 7.45 -52.48 -0.39 1.31 16 35 H 0.16 2.28 8.06 -52.49 -0.42 1.86 16 36 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 37 H 0.05 0.98 7.50 -51.93 -0.39 0.59 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.41 2.45 7.49 -40.82 -0.31 2.14 16 40 H 0.16 1.48 5.78 -52.49 -0.30 1.18 16 41 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 42 H 0.13 0.28 8.06 -52.49 -0.42 -0.14 16 43 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -35.19 377.46 -7.75 -42.94 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -4.98 Total: 7.21 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -5.24 Total: -4.75 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 1.38 Total: -60.26 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: 0.07 Total: -6.44 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.67 Total: 15.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.19 -7.75 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.806 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds