Wall clock time and date at job start Sat Apr 11 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47129 * 2 1 4 4 N 1.46499 * 109.46771 * 120.00107 * 2 1 3 5 5 C 1.39986 * 120.00228 * 274.99715 * 4 2 1 6 6 C 1.40430 * 125.97241 * 359.97438 * 5 4 2 7 7 C 1.35253 * 107.86270 * 179.97438 * 6 5 4 8 8 N 1.34962 * 107.86027 * 0.02562 * 7 6 5 9 9 C 1.46499 * 125.97165 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47419 * 124.99615 * 9 8 7 11 11 H 1.07999 * 119.99729 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00010 * 180.02562 * 10 9 8 13 13 N 1.31524 * 119.99732 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00339 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46652 * 89.99915 * 14 12 10 16 16 H 1.48493 * 109.47021 * 210.00008 * 14 12 10 17 17 H 1.48496 * 109.47029 * 330.00432 * 14 12 10 18 18 N 1.31224 * 125.97845 * 179.69667 * 5 4 2 19 19 C 1.50699 * 109.46969 * 240.00000 * 2 1 3 20 20 O 1.21283 * 120.00182 * 240.00006 * 19 2 1 21 21 N 1.34778 * 120.00276 * 60.00147 * 19 2 1 22 22 C 1.39405 * 120.00140 * 185.52763 * 21 19 2 23 23 C 1.38790 * 120.16098 * 24.84888 * 22 21 19 24 24 C 1.38069 * 120.07078 * 179.97438 * 23 22 21 25 25 C 1.38535 * 120.41353 * 359.97438 * 24 23 22 26 26 C 1.37838 * 120.32068 * 359.97438 * 25 24 23 27 27 C 1.39695 * 119.91853 * 0.02562 * 26 25 24 28 28 C 1.43195 * 120.20233 * 179.97438 * 27 26 25 29 29 N 5.47374 * 93.10853 * 293.91581 * 2 1 3 30 30 H 1.08994 * 109.47140 * 299.99746 * 1 2 3 31 31 H 1.09000 * 109.47262 * 60.00199 * 1 2 3 32 32 H 1.09004 * 109.47437 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99971 * 95.00518 * 4 2 1 34 34 H 1.08005 * 126.06891 * 0.02562 * 6 5 4 35 35 H 1.08000 * 126.06751 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47036 * 244.99779 * 9 8 7 37 37 H 1.09000 * 109.47319 * 4.99843 * 9 8 7 38 38 H 0.96994 * 119.99546 * 180.02562 * 13 12 10 39 39 H 0.96998 * 119.99746 * 5.52324 * 21 19 2 40 40 H 1.07999 * 119.96735 * 359.95577 * 23 22 21 41 41 H 1.08003 * 119.79583 * 180.02562 * 24 23 22 42 42 H 1.07992 * 119.84385 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.03740 * 179.74130 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1520 0.0076 2.4021 6 6 1.8566 1.3652 2.6062 7 6 2.1173 1.6564 3.9011 8 7 2.5613 0.5299 4.4973 9 6 2.9583 0.3986 5.9013 10 6 2.1720 -0.7151 6.5437 11 1 1.4492 -1.2698 5.9639 12 6 2.3755 -1.0257 7.8715 13 7 1.6896 -1.9980 8.4319 14 14 3.6262 -0.0667 8.8741 15 1 2.9627 1.1019 9.5061 16 1 4.1929 -0.9447 9.9292 17 1 4.7172 0.4052 7.9840 18 7 2.5704 -0.4931 3.5405 19 6 2.0323 -0.7104 -1.2305 20 8 2.7296 -1.6965 -1.1192 21 7 1.7067 -0.2500 -2.4546 22 6 2.0735 -0.9701 -3.5905 23 6 2.2908 -2.3385 -3.5086 24 6 2.6535 -3.0500 -4.6349 25 6 2.8027 -2.4069 -5.8528 26 6 2.5900 -1.0488 -5.9533 27 6 2.2227 -0.3155 -4.8224 28 6 2.0007 1.0958 -4.9197 29 7 1.8268 2.2158 -4.9964 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 1.4861 2.0544 1.8617 35 1 1.9923 2.6193 4.3739 36 1 4.0228 0.1714 5.9582 37 1 2.7578 1.3335 6.4246 38 1 1.8325 -2.2163 9.3661 39 1 1.2172 0.5825 -2.5452 40 1 2.1764 -2.8472 -2.5628 41 1 2.8211 -4.1147 -4.5662 42 1 3.0863 -2.9725 -6.7280 43 1 2.7118 -0.5514 -6.9042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086154592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:59 Heat of formation + Delta-G solvation = 95.880952 kcal Electronic energy + Delta-G solvation = -27209.401284 eV Core-core repulsion = 23256.250879 eV Total energy + Delta-G solvation = -3953.150405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14042 -41.71543 -39.93028 -37.54256 -37.11425 -36.13115 -35.35414 -33.49587 -32.31417 -31.79231 -30.79696 -29.99094 -28.62735 -25.90427 -24.88428 -24.45054 -23.62509 -22.08390 -21.36788 -20.88052 -20.13735 -19.05784 -18.70710 -18.49549 -17.77868 -16.99030 -16.65622 -16.42587 -16.17562 -16.12454 -15.58128 -15.31623 -15.28034 -15.07424 -14.78460 -14.66649 -14.39177 -14.23366 -14.10458 -13.91086 -13.76152 -13.64417 -13.43912 -13.26143 -12.93066 -12.76515 -12.63240 -12.47056 -12.42820 -12.13633 -11.80007 -11.73485 -11.19666 -11.10140 -10.88930 -10.84225 -9.95575 -9.51080 -9.22570 -8.55592 -8.36302 -6.45735 -0.28714 0.28524 1.31214 1.34352 1.35009 1.38268 1.43123 1.49522 1.52114 1.91202 1.93262 2.25399 2.29621 2.73038 2.77875 2.90245 2.96097 3.29914 3.83677 3.93189 4.02269 4.09190 4.13426 4.29944 4.31868 4.42266 4.44393 4.60246 4.68508 4.76803 4.88277 4.89693 4.92836 5.01411 5.09434 5.24591 5.26132 5.27235 5.36434 5.54865 5.56976 5.90052 5.99782 6.04578 6.30359 6.38587 6.51722 6.62484 6.68793 6.77676 7.16942 7.32945 8.81044 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023398 B = 0.001967 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.384926 B =14229.591003 C =14877.364595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 H 0.126 0.874 4 N -0.712 5.712 5 C 0.313 3.687 6 C -0.322 4.322 7 C 0.068 3.932 8 N -0.357 5.357 9 C 0.242 3.758 10 C -0.543 4.543 11 H 0.023 0.977 12 C 0.010 3.990 13 N -0.944 5.944 14 Si 0.958 3.042 15 H -0.250 1.250 16 H -0.282 1.282 17 H -0.242 1.242 18 N -0.393 5.393 19 C 0.520 3.480 20 O -0.531 6.531 21 N -0.658 5.658 22 C 0.189 3.811 23 C -0.155 4.155 24 C -0.062 4.062 25 C -0.132 4.132 26 C -0.042 4.042 27 C -0.075 4.075 28 C 0.272 3.728 29 N -0.450 5.450 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.401 0.599 34 H 0.174 0.826 35 H 0.207 0.793 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.271 0.729 39 H 0.423 0.577 40 H 0.136 0.864 41 H 0.153 0.847 42 H 0.167 0.833 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 5.904 -31.238 31.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 H 0.143 0.857 4 N -0.354 5.354 5 C 0.055 3.945 6 C -0.354 4.354 7 C -0.081 4.081 8 N -0.137 5.137 9 C 0.121 3.879 10 C -0.581 4.581 11 H 0.042 0.958 12 C -0.188 4.188 13 N -0.583 5.583 14 Si 0.778 3.222 15 H -0.174 1.174 16 H -0.207 1.207 17 H -0.166 1.166 18 N -0.225 5.225 19 C 0.308 3.692 20 O -0.407 6.407 21 N -0.303 5.303 22 C 0.090 3.910 23 C -0.176 4.176 24 C -0.081 4.081 25 C -0.151 4.151 26 C -0.062 4.062 27 C -0.082 4.082 28 C -0.043 4.043 29 N -0.127 5.127 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.236 0.764 34 H 0.192 0.808 35 H 0.224 0.776 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.262 0.738 40 H 0.153 0.847 41 H 0.170 0.830 42 H 0.184 0.816 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.428 5.992 -30.338 30.927 hybrid contribution -0.152 -0.025 0.655 0.672 sum 0.276 5.967 -29.683 30.279 Atomic orbital electron populations 1.22284 0.91651 1.03446 1.04630 1.20676 0.96152 0.97455 0.81099 0.85660 1.43242 1.76140 1.11993 1.04067 1.19461 0.96463 0.91757 0.86797 1.21200 1.21614 0.94814 0.97793 1.23165 0.97610 0.93416 0.93862 1.48384 1.50348 1.05831 1.09118 1.19745 0.95823 0.98461 0.73844 1.21254 1.22934 1.17765 0.96128 0.95815 1.25973 0.98189 0.96077 0.98587 1.70066 1.43080 1.31473 1.13710 0.85584 0.79185 0.78913 0.78478 1.17439 1.20725 1.16552 1.77419 1.33023 1.14252 0.97820 1.21052 0.78758 0.84472 0.84898 1.90706 1.36513 1.26989 1.86452 1.43333 1.56336 1.26652 1.03934 1.17812 0.96956 0.91390 0.84828 1.21415 1.03239 0.91624 1.01293 1.21649 0.93473 1.01552 0.91471 1.21456 1.00848 0.93915 0.98836 1.21367 0.93701 0.94359 0.96818 1.15800 1.13121 0.84370 0.94888 1.25716 0.92712 0.92570 0.93256 1.81340 1.10724 1.12658 1.07935 0.90822 0.88208 0.92462 0.76355 0.80849 0.77646 0.94571 0.90235 0.91975 0.73821 0.84679 0.82977 0.81588 0.82183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.40 71.98 0.68 -1.92 16 2 C 0.16 3.14 2.98 44.25 0.13 3.27 16 3 H 0.13 2.06 7.14 -2.39 -0.02 2.04 16 4 N -0.71 -21.96 5.16 -326.98 -1.69 -23.64 16 5 C 0.31 11.83 8.14 133.39 1.09 12.92 16 6 C -0.32 -10.02 9.92 22.11 0.22 -9.80 16 7 C 0.07 2.31 11.44 83.52 0.96 3.27 16 8 N -0.36 -16.06 3.67 -351.84 -1.29 -17.35 16 9 C 0.24 11.50 5.33 85.63 0.46 11.95 16 10 C -0.54 -32.23 9.78 25.60 0.25 -31.98 16 11 H 0.02 1.65 8.06 -2.91 -0.02 1.62 16 12 C 0.01 0.58 5.47 84.65 0.46 1.05 16 13 N -0.94 -59.48 13.96 21.45 0.30 -59.18 16 14 Si 0.96 41.78 27.47 68.60 1.88 43.67 16 15 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 18 N -0.39 -18.93 12.42 -54.55 -0.68 -19.61 16 19 C 0.52 10.60 7.02 87.66 0.62 11.22 16 20 O -0.53 -14.55 13.00 -3.04 -0.04 -14.59 16 21 N -0.66 -9.69 5.00 -302.87 -1.52 -11.20 16 22 C 0.19 2.83 6.43 38.57 0.25 3.08 16 23 C -0.16 -2.43 8.71 22.36 0.19 -2.24 16 24 C -0.06 -0.59 10.03 22.30 0.22 -0.37 16 25 C -0.13 -0.75 10.02 22.25 0.22 -0.52 16 26 C -0.04 -0.30 9.75 22.53 0.22 -0.08 16 27 C -0.08 -0.91 5.75 -21.18 -0.12 -1.04 16 28 C 0.27 4.09 14.26 88.33 1.26 5.35 16 29 N -0.45 -8.79 18.54 19.00 0.35 -8.43 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 0.88 7.70 -2.39 -0.02 0.86 16 32 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.40 13.63 7.92 -92.71 -0.73 12.90 16 34 H 0.17 3.79 7.45 -2.91 -0.02 3.77 16 35 H 0.21 4.93 8.06 -2.91 -0.02 4.90 16 36 H 0.04 1.73 7.20 -2.39 -0.02 1.71 16 37 H 0.08 3.22 7.50 -2.39 -0.02 3.20 16 38 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 39 H 0.42 4.34 7.49 -92.71 -0.69 3.64 16 40 H 0.14 2.73 5.78 -2.91 -0.02 2.71 16 41 H 0.15 0.86 8.06 -2.91 -0.02 0.83 16 42 H 0.17 -0.07 8.06 -2.91 -0.02 -0.10 16 43 H 0.16 0.37 8.06 -2.91 -0.02 0.34 16 Total: -1.00 -84.30 377.46 4.03 -80.27 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.40 Total: 25.91 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 7.10 Total: 4.16 kcal Atomic # 7 Polarization: -134.90 SS G_CDS: -4.52 Total: -139.42 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.04 Total: -14.59 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.88 Total: 43.67 kcal Total: -84.30 4.03 -80.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.151 kcal (2) G-P(sol) polarization free energy of solvation -84.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds