Wall clock time and date at job start Sat Apr 11 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46785 * 2 1 4 4 N 1.30106 * 124.94917 * 269.97165 * 3 2 1 5 5 C 1.35787 * 109.64359 * 180.02562 * 4 3 2 6 6 C 1.39734 * 133.60143 * 179.97438 * 5 4 3 7 7 C 1.36605 * 119.88806 * 180.02562 * 6 5 4 8 8 C 1.38776 * 120.66622 * 359.97438 * 7 6 5 9 9 C 1.37851 * 120.45485 * 0.03810 * 8 7 6 10 10 C 1.38832 * 119.68776 * 359.97438 * 9 8 7 11 11 N 1.36036 * 124.94888 * 90.00017 * 3 2 1 12 12 C 1.46505 * 126.35096 * 359.94039 * 11 3 2 13 13 C 1.50696 * 109.47091 * 270.01925 * 12 11 3 14 14 O 1.21310 * 120.00099 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00186 * 179.97438 * 13 12 11 16 16 C 1.40592 * 120.00039 * 179.97438 * 15 13 12 17 17 C 1.40644 * 126.08466 * 359.69658 * 16 15 13 18 18 N 1.30913 * 108.38995 * 179.81183 * 17 16 15 19 19 N 1.40071 * 108.40451 * 0.44477 * 18 17 16 20 20 C 1.37315 * 126.07172 * 179.69638 * 19 18 17 21 21 H 1.08000 * 120.00687 * 180.02562 * 20 19 18 22 22 C 1.38990 * 119.99844 * 0.02562 * 20 19 18 23 23 N 1.31294 * 119.99917 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99896 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47298 * 89.99886 * 24 22 20 26 26 H 1.48510 * 109.46981 * 209.99706 * 24 22 20 27 27 H 1.48495 * 109.47131 * 329.99315 * 24 22 20 28 28 C 1.35688 * 126.08083 * 180.02562 * 16 15 13 29 29 H 1.09006 * 109.47054 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47136 * 300.00097 * 1 2 3 31 31 H 1.09003 * 109.46709 * 60.00294 * 1 2 3 32 32 H 1.08993 * 109.47136 * 239.99903 * 2 1 3 33 33 H 1.09003 * 109.46709 * 119.99706 * 2 1 3 34 34 H 1.08009 * 120.05649 * 0.29744 * 6 5 4 35 35 H 1.08001 * 119.66343 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.77372 * 180.02562 * 8 7 6 37 37 H 1.08000 * 120.15788 * 179.97438 * 9 8 7 38 38 H 1.09001 * 109.46639 * 30.01863 * 12 11 3 39 39 H 1.08995 * 109.47160 * 150.01574 * 12 11 3 40 40 H 0.96993 * 119.99616 * 0.02562 * 15 13 12 41 41 H 1.08004 * 125.80567 * 359.95649 * 17 16 15 42 42 H 0.97005 * 119.99823 * 180.02562 * 23 22 20 43 43 H 1.07998 * 126.24388 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2812 2.1234 -1.0664 5 6 2.7181 3.3581 -0.7080 6 6 3.1179 4.4859 -1.4296 7 6 3.5166 5.6119 -0.7670 8 6 3.5291 5.6498 0.6202 9 6 3.1391 4.5491 1.3528 10 6 2.7310 3.3958 0.6965 11 7 2.2920 2.1556 1.1150 12 6 2.1343 1.7131 2.5027 13 6 0.7410 2.0356 2.9775 14 8 -0.0432 2.5819 2.2304 15 7 0.3660 1.7172 4.2323 16 6 -0.9338 2.0186 4.6754 17 6 -1.9393 2.6523 3.9234 18 7 -3.0097 2.7564 4.6698 19 7 -2.7281 2.2048 5.9261 20 6 -3.5944 2.1301 6.9889 21 1 -3.2726 1.6825 7.9176 22 6 -4.8856 2.6305 6.8695 23 7 -5.2767 3.1751 5.7407 24 14 -6.0639 2.5295 8.3155 25 1 -5.9331 3.7528 9.1470 26 1 -7.4568 2.4197 7.8122 27 1 -5.7387 1.3357 9.1365 28 6 -1.4394 1.7555 5.9068 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.1075 4.4689 -2.5095 35 1 3.8253 6.4814 -1.3283 36 1 3.8466 6.5478 1.1294 37 1 3.1511 4.5838 2.4322 38 1 2.2984 0.6371 2.5618 39 1 2.8608 2.2265 3.1326 40 1 0.9931 1.2808 4.8298 41 1 -1.8451 2.9929 2.9028 42 1 -6.1778 3.5247 5.6574 43 1 -0.9176 1.2771 6.7224 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139655892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:08 Heat of formation + Delta-G solvation = 125.559109 kcal Electronic energy + Delta-G solvation = -28503.544702 eV Core-core repulsion = 24551.681238 eV Total energy + Delta-G solvation = -3951.863463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.25148 -40.00431 -38.72826 -37.43339 -34.44966 -34.12464 -33.50089 -33.24312 -30.68163 -30.28224 -28.80488 -28.55947 -27.06243 -24.82677 -24.50082 -22.26537 -21.87355 -21.34019 -20.78289 -19.65889 -19.54314 -17.77352 -17.46529 -17.17014 -16.81811 -15.60265 -15.52298 -15.21871 -15.18352 -15.05496 -14.35083 -14.13033 -13.99593 -13.89729 -13.68598 -13.46734 -13.36323 -12.96766 -12.65297 -12.49578 -11.99067 -11.75254 -11.63951 -11.53658 -11.49245 -11.44108 -11.31547 -11.12105 -11.02923 -10.58236 -10.56107 -10.28492 -9.91460 -9.39105 -9.24926 -8.88849 -8.26229 -8.14221 -8.05130 -6.81566 -6.61935 -4.30229 0.97021 1.53032 2.37455 2.59601 2.78516 2.95188 3.00773 3.06258 3.45263 3.57759 3.80664 3.91609 4.07572 4.27913 4.36222 4.53487 4.58955 4.72491 4.91120 4.95985 4.98025 5.00752 5.03910 5.18432 5.30184 5.44221 5.49554 5.56069 5.70253 5.79292 5.94930 6.11957 6.14795 6.31977 6.33926 6.45351 6.51163 6.54283 6.76081 6.86415 6.88863 6.96364 7.09935 7.15262 7.78103 7.92299 8.00732 8.17548 8.49764 8.69230 9.29827 9.58856 10.33814 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018214 B = 0.002561 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.940859 B =10932.546553 C =11515.811055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 C 0.301 3.699 4 N -0.496 5.496 5 C 0.050 3.950 6 C -0.068 4.068 7 C -0.130 4.130 8 C -0.107 4.107 9 C -0.104 4.104 10 C 0.058 3.942 11 N -0.469 5.469 12 C 0.093 3.907 13 C 0.476 3.524 14 O -0.512 6.512 15 N -0.618 5.618 16 C -0.063 4.063 17 C -0.030 4.030 18 N -0.260 5.260 19 N -0.140 5.140 20 C -0.323 4.323 21 H 0.117 0.883 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.935 3.065 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.264 1.264 28 C -0.083 4.083 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.397 0.603 41 H 0.174 0.826 42 H 0.276 0.724 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.376 -3.526 -5.564 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 C 0.036 3.964 4 N -0.215 5.215 5 C -0.068 4.068 6 C -0.088 4.088 7 C -0.151 4.151 8 C -0.127 4.127 9 C -0.125 4.125 10 C -0.050 4.050 11 N -0.158 5.158 12 C -0.034 4.034 13 C 0.259 3.741 14 O -0.388 6.388 15 N -0.261 5.261 16 C -0.169 4.169 17 C -0.206 4.206 18 N -0.091 5.091 19 N 0.093 4.907 20 C -0.456 4.456 21 H 0.134 0.866 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.759 3.241 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.188 1.188 28 C -0.234 4.234 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.230 0.770 41 H 0.191 0.809 42 H 0.086 0.914 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 15.288 -2.909 -6.887 17.018 hybrid contribution 0.731 -0.261 1.995 2.140 sum 16.019 -3.170 -4.892 17.046 Atomic orbital electron populations 1.21776 0.92667 1.02458 1.04003 1.20183 0.97510 0.86669 1.04081 1.23567 0.96501 0.95889 0.80436 1.70394 1.20650 1.03434 1.27011 1.19007 1.03908 0.93624 0.90266 1.19965 0.98792 0.90427 0.99569 1.20592 1.02293 0.97855 0.94339 1.20828 1.00449 0.97420 0.93989 1.19949 1.02340 0.90843 0.99392 1.18788 1.03617 0.87412 0.95201 1.44643 1.54089 1.11155 1.05910 1.21565 0.97156 1.03132 0.81521 1.20436 0.89262 0.81767 0.82602 1.90692 1.52535 1.41308 1.54226 1.42390 1.12716 1.58489 1.12508 1.17208 0.86352 1.17780 0.95526 1.24081 0.90738 1.04793 1.00954 1.78290 1.20210 1.21000 0.89606 1.44571 1.05934 1.31476 1.08762 1.19885 0.92861 1.41699 0.91115 0.86559 1.25657 0.98047 0.95265 0.98169 1.70215 1.18290 1.27404 1.23504 0.85821 0.79051 0.79365 0.79892 1.19545 1.20027 1.18778 1.21245 0.89221 1.14792 0.98184 0.91529 0.91318 0.91787 0.88323 0.90156 0.85615 0.85593 0.85477 0.86305 0.86284 0.86610 0.76957 0.80936 0.91369 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.89 37.16 0.37 -1.50 16 2 C -0.05 -0.48 6.23 -27.88 -0.17 -0.66 16 3 C 0.30 4.27 7.11 -154.83 -1.10 3.17 16 4 N -0.50 -8.03 11.27 -8.24 -0.09 -8.12 16 5 C 0.05 0.79 7.23 -84.70 -0.61 0.17 16 6 C -0.07 -0.90 10.05 -39.61 -0.40 -1.29 16 7 C -0.13 -1.46 9.96 -39.97 -0.40 -1.85 16 8 C -0.11 -1.21 10.03 -39.52 -0.40 -1.61 16 9 C -0.10 -1.36 10.05 -39.50 -0.40 -1.76 16 10 C 0.06 0.87 6.88 -83.98 -0.58 0.29 16 11 N -0.47 -6.44 2.29 -112.43 -0.26 -6.70 16 12 C 0.09 1.00 6.41 -5.19 -0.03 0.96 16 13 C 0.48 7.44 7.63 -10.99 -0.08 7.35 16 14 O -0.51 -10.53 12.67 5.53 0.07 -10.46 16 15 N -0.62 -9.70 5.47 -10.00 -0.05 -9.75 16 16 C -0.06 -1.37 6.90 -83.84 -0.58 -1.95 16 17 C -0.03 -0.78 10.85 -17.04 -0.18 -0.96 16 18 N -0.26 -7.45 10.40 30.80 0.32 -7.13 16 19 N -0.14 -3.75 3.74 -11.41 -0.04 -3.79 16 20 C -0.32 -8.36 10.25 -14.82 -0.15 -8.51 16 21 H 0.12 2.67 7.83 -52.49 -0.41 2.26 16 22 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -21.23 11.81 55.50 0.66 -20.58 16 24 Si 0.94 18.58 29.55 -169.99 -5.02 13.56 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 28 C -0.08 -1.87 11.49 -16.39 -0.19 -2.06 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.06 6.94 -51.93 -0.36 0.70 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.64 7.01 -51.93 -0.36 0.27 16 34 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.12 0.84 7.00 -51.93 -0.36 0.48 16 39 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.40 4.41 8.82 -40.82 -0.36 4.05 16 41 H 0.17 4.50 5.92 -52.48 -0.31 4.19 16 42 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.15 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -36.36 369.66 -8.97 -45.33 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.11 Total: 11.20 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -5.00 Total: -9.13 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.53 Total: -56.07 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.36 -8.97 -45.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139655892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.884 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds