Wall clock time and date at job start Sat Apr 11 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47143 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00392 * 2 1 3 5 5 O 1.21293 * 119.99741 * 240.00097 * 4 2 1 6 6 N 1.34774 * 120.00238 * 59.99620 * 4 2 1 7 7 C 1.40151 * 120.00298 * 180.02562 * 6 4 2 8 8 C 1.40407 * 125.97364 * 359.71698 * 7 6 4 9 9 C 1.35241 * 107.86950 * 179.82931 * 8 7 6 10 10 N 1.34966 * 107.86041 * 0.42707 * 9 8 7 11 11 C 1.46497 * 125.97584 * 179.68666 * 10 9 8 12 12 C 1.50706 * 109.46769 * 125.02047 * 11 10 9 13 13 H 1.08002 * 119.99977 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99806 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00233 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99832 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46983 * 59.99984 * 16 14 12 18 18 H 1.48496 * 109.47184 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47190 * 300.00206 * 16 14 12 20 20 N 1.31217 * 125.97613 * 180.02562 * 7 6 4 21 21 N 1.46505 * 109.47115 * 120.00405 * 2 1 3 22 22 C 1.36039 * 126.34902 * 60.02402 * 21 2 1 23 23 N 1.30105 * 110.09365 * 179.97438 * 22 21 2 24 24 C 1.35784 * 109.64857 * 359.97438 * 23 22 21 25 25 C 1.39747 * 133.60087 * 180.02562 * 24 23 22 26 26 C 1.36602 * 119.88190 * 179.97438 * 25 24 23 27 27 C 1.38779 * 120.66936 * 0.02562 * 26 25 24 28 28 C 1.37850 * 120.45381 * 0.02562 * 27 26 25 29 29 C 1.38049 * 126.34518 * 239.99792 * 21 2 1 30 30 H 1.08994 * 109.47207 * 60.00140 * 1 2 3 31 31 H 1.09003 * 109.46793 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47287 * 299.99598 * 1 2 3 33 33 H 0.97003 * 120.00147 * 0.02562 * 6 4 2 34 34 H 1.08004 * 126.06411 * 359.97438 * 8 7 6 35 35 H 1.08000 * 126.06627 * 180.16154 * 9 8 7 36 36 H 1.08995 * 109.47799 * 245.01746 * 11 10 9 37 37 H 1.08997 * 109.46978 * 5.02864 * 11 10 9 38 38 H 0.96999 * 119.99744 * 179.97438 * 15 14 12 39 39 H 1.07996 * 124.94773 * 359.97438 * 22 21 2 40 40 H 1.07998 * 120.05391 * 359.95854 * 25 24 23 41 41 H 1.08001 * 119.66220 * 180.02562 * 26 25 24 42 42 H 1.07998 * 119.76674 * 180.02562 * 27 26 25 43 43 H 1.07998 * 120.15388 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1735 -0.9108 -3.5990 8 6 2.9883 -2.0541 -3.6164 9 6 3.2135 -2.3835 -4.9086 10 7 2.5760 -1.4806 -5.6831 11 6 2.5627 -1.4600 -7.1479 12 6 1.1373 -1.4587 -7.6373 13 1 0.3229 -1.4715 -6.9281 14 6 0.8730 -1.4413 -8.9904 15 7 1.8648 -1.4252 -9.8540 16 14 -0.8937 -1.4390 -9.5969 17 1 -1.5933 -0.2357 -9.0792 18 1 -0.9073 -1.4183 -11.0817 19 1 -1.5852 -2.6604 -9.1120 20 7 1.9302 -0.5659 -4.8414 21 7 2.0184 -0.6907 1.1962 22 6 1.7710 -1.9840 1.5379 23 7 2.3594 -2.2695 2.6626 24 6 3.0254 -1.1780 3.1194 25 6 3.8072 -0.9297 4.2508 26 6 4.3597 0.3054 4.4386 27 6 4.1528 1.3212 3.5159 28 6 3.3844 1.0993 2.3931 29 6 2.8153 -0.1499 2.1852 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.1494 0.5390 -2.5436 34 1 3.3660 -2.5790 -2.7514 35 1 3.8028 -3.2182 -5.2586 36 1 3.0696 -0.5630 -7.5034 37 1 3.0766 -2.3428 -7.5283 38 1 1.6788 -1.4133 -10.8059 39 1 1.1734 -2.6732 0.9598 40 1 3.9741 -1.7129 4.9755 41 1 4.9637 0.4933 5.3140 42 1 4.5969 2.2921 3.6786 43 1 3.2268 1.8931 1.6780 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172091260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:20 Heat of formation + Delta-G solvation = 131.854083 kcal Electronic energy + Delta-G solvation = -27800.839044 eV Core-core repulsion = 23849.248552 eV Total energy + Delta-G solvation = -3951.590493 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.47520 -40.86903 -39.59701 -37.50127 -35.23465 -35.04753 -33.45717 -31.91044 -30.94148 -29.70309 -29.49397 -29.32877 -26.89887 -25.37414 -23.45156 -23.32583 -22.39734 -22.18065 -20.91151 -20.13760 -19.52943 -17.79448 -17.67470 -16.89514 -16.65133 -16.58620 -16.00687 -15.73573 -15.48957 -15.16848 -14.56453 -14.52196 -14.32693 -14.09970 -13.93045 -13.79855 -13.17326 -13.08770 -12.82704 -12.45985 -12.41880 -12.30132 -12.22873 -11.91973 -11.85208 -11.61884 -11.15397 -10.94169 -10.81953 -10.61285 -10.32917 -10.17606 -10.11182 -9.78900 -9.61515 -8.69825 -8.56527 -8.31896 -8.29167 -7.63363 -6.30954 -4.36629 0.76868 1.28527 1.95657 2.02439 2.53860 2.73131 2.79118 3.20303 3.24250 3.27702 3.51487 3.61364 3.70088 4.06693 4.10249 4.23694 4.25100 4.29312 4.36701 4.70936 4.80882 4.99580 5.01602 5.04246 5.20369 5.21811 5.31151 5.39636 5.46560 5.52488 5.63745 5.89304 6.05593 6.18741 6.28988 6.31097 6.33429 6.40289 6.64707 6.75135 6.86296 6.96133 7.18271 7.37415 7.62080 7.70742 7.78867 7.90720 7.92378 8.48197 8.71308 9.29225 10.77787 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026280 B = 0.002077 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.212902 B =13478.132320 C =13704.300808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.129 3.871 3 H 0.128 0.872 4 C 0.507 3.493 5 O -0.498 6.498 6 N -0.621 5.621 7 C 0.253 3.747 8 C -0.286 4.286 9 C 0.054 3.946 10 N -0.315 5.315 11 C 0.258 3.742 12 C -0.531 4.531 13 H 0.068 0.932 14 C 0.063 3.937 15 N -0.894 5.894 16 Si 0.909 3.091 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 N -0.300 5.300 21 N -0.477 5.477 22 C 0.293 3.707 23 N -0.500 5.500 24 C 0.050 3.950 25 C -0.065 4.065 26 C -0.130 4.130 27 C -0.105 4.105 28 C -0.110 4.110 29 C 0.049 3.951 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.412 0.588 34 H 0.159 0.841 35 H 0.169 0.831 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.268 0.732 39 H 0.209 0.791 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.569 5.721 24.354 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.021 3.979 3 H 0.146 0.854 4 C 0.289 3.711 5 O -0.370 6.370 6 N -0.269 5.269 7 C 0.000 4.000 8 C -0.318 4.318 9 C -0.096 4.096 10 N -0.097 5.097 11 C 0.140 3.860 12 C -0.569 4.569 13 H 0.086 0.914 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.736 3.264 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.200 1.200 20 N -0.131 5.131 21 N -0.167 5.167 22 C 0.008 3.992 23 N -0.218 5.218 24 C -0.068 4.068 25 C -0.085 4.085 26 C -0.151 4.151 27 C -0.125 4.125 28 C -0.131 4.131 29 C -0.059 4.059 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.248 0.752 34 H 0.176 0.824 35 H 0.187 0.813 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.226 0.774 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.482 5.118 23.656 24.209 hybrid contribution -0.747 0.564 -0.752 1.201 sum -0.265 5.682 22.904 23.600 Atomic orbital electron populations 1.22212 0.90376 1.04793 1.04719 1.21142 0.97069 0.97590 0.82123 0.85433 1.20483 0.81275 0.85477 0.83825 1.90738 1.35658 1.24965 1.85597 1.42264 1.51372 1.30653 1.02649 1.19026 0.99482 0.95072 0.86413 1.21496 1.10930 1.02043 0.97293 1.22588 0.99455 0.96623 0.90980 1.49128 1.34419 1.18084 1.08089 1.19784 0.99610 0.99415 0.67156 1.21189 0.91166 1.52485 0.92079 0.91363 1.24950 0.98288 0.94523 0.96300 1.69904 1.31364 1.49416 1.02527 0.86371 0.83669 0.78916 0.77454 1.19934 1.20997 1.20015 1.77335 1.21548 1.16551 0.97656 1.45024 1.42156 1.11712 1.17802 1.25223 0.97701 0.83547 0.92757 1.70520 1.13931 1.26594 1.10765 1.19079 1.01411 0.89714 0.96615 1.20026 0.95913 0.97331 0.95190 1.20633 1.01448 0.92858 1.00123 1.20857 0.98481 0.99424 0.93698 1.19952 1.00176 0.93624 0.99368 1.18863 0.98719 0.96809 0.91538 0.89299 0.90551 0.90048 0.75207 0.82372 0.81339 0.93620 0.92426 0.92192 0.77423 0.85439 0.85466 0.85360 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.14 37.16 0.34 -0.58 16 2 C 0.13 1.06 3.40 -69.08 -0.23 0.83 16 3 H 0.13 0.76 7.62 -51.93 -0.40 0.36 16 4 C 0.51 6.18 7.09 -10.99 -0.08 6.10 16 5 O -0.50 -7.91 12.61 5.55 0.07 -7.84 16 6 N -0.62 -8.16 5.34 -11.13 -0.06 -8.22 16 7 C 0.25 4.66 8.11 -154.40 -1.25 3.41 16 8 C -0.29 -5.36 9.61 -39.83 -0.38 -5.74 16 9 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 10 N -0.32 -7.02 3.67 -62.56 -0.23 -7.25 16 11 C 0.26 6.34 6.26 -5.19 -0.03 6.30 16 12 C -0.53 -14.32 9.24 -34.44 -0.32 -14.64 16 13 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 16 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 N -0.30 -6.48 12.42 31.44 0.39 -6.09 16 21 N -0.48 -5.10 2.45 -109.94 -0.27 -5.37 16 22 C 0.29 3.45 10.71 -89.79 -0.96 2.49 16 23 N -0.50 -6.91 11.27 -12.05 -0.14 -7.04 16 24 C 0.05 0.64 7.23 -84.70 -0.61 0.03 16 25 C -0.07 -0.69 10.05 -39.61 -0.40 -1.08 16 26 C -0.13 -1.09 9.96 -39.97 -0.40 -1.49 16 27 C -0.10 -0.85 10.03 -39.52 -0.40 -1.25 16 28 C -0.11 -1.02 9.89 -39.50 -0.39 -1.41 16 29 C 0.05 0.56 6.87 -83.99 -0.58 -0.01 16 30 H 0.09 0.38 7.56 -51.93 -0.39 -0.01 16 31 H 0.08 0.47 7.95 -51.93 -0.41 0.05 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.41 4.08 8.24 -40.82 -0.34 3.74 16 34 H 0.16 2.91 5.92 -52.48 -0.31 2.60 16 35 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.39 8.07 -51.93 -0.42 0.98 16 38 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.21 1.96 8.06 -52.49 -0.42 1.53 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.84 7.76 -52.49 -0.41 0.44 16 LS Contribution 372.19 15.07 5.61 5.61 Total: -1.00 -34.52 372.19 -10.07 -44.60 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.18 Total: 4.48 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -5.99 Total: -4.64 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.43 Total: -57.99 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.07 Total: -7.84 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.52 -10.07 -44.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172091260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.451 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds