Wall clock time and date at job start Sat Apr 11 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47143 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00392 * 2 1 3 5 5 O 1.21293 * 119.99741 * 240.00097 * 4 2 1 6 6 N 1.34774 * 120.00238 * 59.99620 * 4 2 1 7 7 C 1.40151 * 120.00298 * 180.02562 * 6 4 2 8 8 C 1.40407 * 125.97364 * 359.71698 * 7 6 4 9 9 C 1.35241 * 107.86950 * 179.82931 * 8 7 6 10 10 N 1.34966 * 107.86041 * 0.42707 * 9 8 7 11 11 C 1.46497 * 125.97584 * 179.68666 * 10 9 8 12 12 C 1.50706 * 109.46769 * 125.02047 * 11 10 9 13 13 H 1.08002 * 119.99977 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99806 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00233 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99832 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46983 * 59.99984 * 16 14 12 18 18 H 1.48496 * 109.47184 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47190 * 300.00206 * 16 14 12 20 20 N 1.31217 * 125.97613 * 180.02562 * 7 6 4 21 21 N 1.46505 * 109.47115 * 120.00405 * 2 1 3 22 22 C 1.36039 * 126.34902 * 60.02402 * 21 2 1 23 23 N 1.30105 * 110.09365 * 179.97438 * 22 21 2 24 24 C 1.35784 * 109.64857 * 359.97438 * 23 22 21 25 25 C 1.39747 * 133.60087 * 180.02562 * 24 23 22 26 26 C 1.36602 * 119.88190 * 179.97438 * 25 24 23 27 27 C 1.38779 * 120.66936 * 0.02562 * 26 25 24 28 28 C 1.37850 * 120.45381 * 0.02562 * 27 26 25 29 29 C 1.38049 * 126.34518 * 239.99792 * 21 2 1 30 30 H 1.08994 * 109.47207 * 60.00140 * 1 2 3 31 31 H 1.09003 * 109.46793 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47287 * 299.99598 * 1 2 3 33 33 H 0.97003 * 120.00147 * 0.02562 * 6 4 2 34 34 H 1.08004 * 126.06411 * 359.97438 * 8 7 6 35 35 H 1.08000 * 126.06627 * 180.16154 * 9 8 7 36 36 H 1.08995 * 109.47799 * 245.01746 * 11 10 9 37 37 H 1.08997 * 109.46978 * 5.02864 * 11 10 9 38 38 H 0.96999 * 119.99744 * 179.97438 * 15 14 12 39 39 H 1.07996 * 124.94773 * 359.97438 * 22 21 2 40 40 H 1.07998 * 120.05391 * 359.95854 * 25 24 23 41 41 H 1.08001 * 119.66220 * 180.02562 * 26 25 24 42 42 H 1.07998 * 119.76674 * 180.02562 * 27 26 25 43 43 H 1.07998 * 120.15388 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1735 -0.9108 -3.5990 8 6 2.9883 -2.0541 -3.6164 9 6 3.2135 -2.3835 -4.9086 10 7 2.5760 -1.4806 -5.6831 11 6 2.5627 -1.4600 -7.1479 12 6 1.1373 -1.4587 -7.6373 13 1 0.3229 -1.4715 -6.9281 14 6 0.8730 -1.4413 -8.9904 15 7 1.8648 -1.4252 -9.8540 16 14 -0.8937 -1.4390 -9.5969 17 1 -1.5933 -0.2357 -9.0792 18 1 -0.9073 -1.4183 -11.0817 19 1 -1.5852 -2.6604 -9.1120 20 7 1.9302 -0.5659 -4.8414 21 7 2.0184 -0.6907 1.1962 22 6 1.7710 -1.9840 1.5379 23 7 2.3594 -2.2695 2.6626 24 6 3.0254 -1.1780 3.1194 25 6 3.8072 -0.9297 4.2508 26 6 4.3597 0.3054 4.4386 27 6 4.1528 1.3212 3.5159 28 6 3.3844 1.0993 2.3931 29 6 2.8153 -0.1499 2.1852 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.1494 0.5390 -2.5436 34 1 3.3660 -2.5790 -2.7514 35 1 3.8028 -3.2182 -5.2586 36 1 3.0696 -0.5630 -7.5034 37 1 3.0766 -2.3428 -7.5283 38 1 1.6788 -1.4133 -10.8059 39 1 1.1734 -2.6732 0.9598 40 1 3.9741 -1.7129 4.9755 41 1 4.9637 0.4933 5.3140 42 1 4.5969 2.2921 3.6786 43 1 3.2268 1.8931 1.6780 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172091260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:19 Heat of formation + Delta-G solvation = 111.744519 kcal Electronic energy + Delta-G solvation = -27801.711061 eV Core-core repulsion = 23849.248552 eV Total energy + Delta-G solvation = -3952.462509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.27283 -42.26157 -40.77699 -38.21992 -36.37053 -36.04873 -35.29520 -33.05040 -32.23618 -31.01784 -30.40649 -30.11528 -28.63984 -26.26330 -24.95059 -24.18403 -23.47669 -23.03487 -22.26038 -21.41593 -20.60329 -18.81691 -18.67705 -18.43375 -17.97296 -17.72042 -16.98232 -16.69827 -16.66946 -16.35770 -16.01239 -15.77785 -15.26034 -15.16755 -14.83303 -14.58175 -14.52935 -14.27939 -13.92005 -13.82105 -13.66207 -13.42267 -12.98638 -12.94543 -12.85167 -12.71615 -12.60572 -12.29979 -12.28165 -12.13198 -11.74002 -11.59587 -11.43488 -10.98513 -10.89635 -10.72734 -9.82102 -9.31535 -9.19648 -9.07795 -8.33913 -6.48070 0.02928 0.54726 0.80083 1.07589 1.32130 1.39360 1.40516 1.49264 1.60327 1.84219 2.12453 2.24456 2.37590 2.94861 2.98329 3.19809 3.34422 3.57916 3.62037 3.67263 3.93450 4.07520 4.22107 4.22397 4.46059 4.51380 4.52773 4.60937 4.66832 4.69871 4.84321 4.87352 4.89700 4.99683 5.05389 5.08096 5.22100 5.46868 5.55227 5.59655 5.61741 5.77554 5.84676 5.98571 6.03199 6.17898 6.23867 6.62471 6.82415 6.88060 7.01839 7.21927 8.73677 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026280 B = 0.002077 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.212902 B =13478.132320 C =13704.300808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.160 0.840 4 C 0.511 3.489 5 O -0.534 6.534 6 N -0.611 5.611 7 C 0.266 3.734 8 C -0.293 4.293 9 C 0.055 3.945 10 N -0.342 5.342 11 C 0.272 3.728 12 C -0.547 4.547 13 H 0.055 0.945 14 C 0.017 3.983 15 N -0.921 5.921 16 Si 0.972 3.028 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.270 1.270 20 N -0.338 5.338 21 N -0.475 5.475 22 C 0.283 3.717 23 N -0.536 5.536 24 C 0.011 3.989 25 C -0.087 4.087 26 C -0.124 4.124 27 C -0.101 4.101 28 C -0.118 4.118 29 C 0.034 3.966 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.429 0.571 34 H 0.163 0.837 35 H 0.198 0.802 36 H 0.022 0.978 37 H 0.057 0.943 38 H 0.272 0.728 39 H 0.221 0.779 40 H 0.130 0.870 41 H 0.156 0.844 42 H 0.162 0.838 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.101 7.484 25.600 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 H 0.177 0.823 4 C 0.296 3.704 5 O -0.408 6.408 6 N -0.262 5.262 7 C 0.012 3.988 8 C -0.324 4.324 9 C -0.093 4.093 10 N -0.124 5.124 11 C 0.153 3.847 12 C -0.585 4.585 13 H 0.073 0.927 14 C -0.183 4.183 15 N -0.559 5.559 16 Si 0.796 3.204 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.195 1.195 20 N -0.169 5.169 21 N -0.166 5.166 22 C -0.003 4.003 23 N -0.255 5.255 24 C -0.106 4.106 25 C -0.107 4.107 26 C -0.144 4.144 27 C -0.120 4.120 28 C -0.139 4.139 29 C -0.074 4.074 30 H 0.126 0.874 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.268 0.732 34 H 0.181 0.819 35 H 0.215 0.785 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.237 0.763 40 H 0.148 0.852 41 H 0.174 0.826 42 H 0.179 0.821 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.197 6.907 24.932 25.872 hybrid contribution -0.440 0.031 -0.955 1.052 sum -0.636 6.939 23.977 24.969 Atomic orbital electron populations 1.22263 0.88039 1.05000 1.06374 1.21345 0.98596 0.97849 0.79034 0.82297 1.21276 0.79995 0.84851 0.84284 1.90724 1.37259 1.26768 1.86087 1.42354 1.51431 1.30956 1.01432 1.19342 0.97917 0.94619 0.86961 1.21659 1.11181 1.02376 0.97194 1.23148 0.98662 0.96567 0.90942 1.48854 1.36425 1.19665 1.07429 1.19351 0.98242 0.98129 0.68946 1.21358 0.91924 1.52914 0.92322 0.92706 1.25757 1.02310 0.93910 0.96335 1.69990 1.33235 1.49825 1.02881 0.85394 0.78799 0.78981 0.77240 1.19612 1.20034 1.19489 1.77255 1.23258 1.17605 0.98769 1.45114 1.41933 1.11402 1.18115 1.25457 0.97810 0.84429 0.92609 1.70439 1.15145 1.27922 1.12030 1.19529 1.02707 0.90165 0.98162 1.20291 0.96616 0.98680 0.95114 1.21026 1.00492 0.91920 1.00962 1.21328 0.97340 1.00598 0.92748 1.20359 0.99853 0.93300 1.00362 1.19191 0.99202 0.97476 0.91545 0.87371 0.91164 0.88580 0.73209 0.81919 0.78504 0.95963 0.92520 0.91854 0.76268 0.85197 0.82618 0.82086 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.14 71.98 0.66 -0.71 16 2 C 0.14 1.95 3.40 44.25 0.15 2.10 16 3 H 0.16 1.28 7.62 -2.39 -0.02 1.26 16 4 C 0.51 11.66 7.09 87.66 0.62 12.28 16 5 O -0.53 -16.67 12.61 -3.07 -0.04 -16.71 16 6 N -0.61 -15.07 5.34 -307.52 -1.64 -16.71 16 7 C 0.27 9.65 8.11 133.33 1.08 10.73 16 8 C -0.29 -10.86 9.61 22.11 0.21 -10.65 16 9 C 0.06 2.11 11.44 83.52 0.96 3.07 16 10 N -0.34 -15.43 3.67 -351.85 -1.29 -16.72 16 11 C 0.27 13.74 6.26 85.64 0.54 14.27 16 12 C -0.55 -29.97 9.24 25.60 0.24 -29.74 16 13 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 14 C 0.02 0.94 5.46 84.65 0.46 1.40 16 15 N -0.92 -51.32 13.29 21.45 0.28 -51.03 16 16 Si 0.97 42.44 29.54 68.60 2.03 44.46 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 N -0.34 -14.68 12.42 -54.46 -0.68 -15.36 16 21 N -0.48 -9.61 2.45 -501.73 -1.23 -10.84 16 22 C 0.28 6.71 10.71 180.06 1.93 8.64 16 23 N -0.54 -15.32 11.27 -192.03 -2.16 -17.48 16 24 C 0.01 0.30 7.23 39.45 0.29 0.58 16 25 C -0.09 -1.82 10.05 22.25 0.22 -1.59 16 26 C -0.12 -1.81 9.96 22.02 0.22 -1.59 16 27 C -0.10 -1.31 10.03 22.31 0.22 -1.08 16 28 C -0.12 -1.87 9.89 22.32 0.22 -1.65 16 29 C 0.03 0.74 6.87 38.86 0.27 1.01 16 30 H 0.11 0.54 7.56 -2.39 -0.02 0.52 16 31 H 0.07 0.73 7.95 -2.39 -0.02 0.71 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.43 7.51 8.24 -92.71 -0.76 6.74 16 34 H 0.16 5.94 5.92 -2.91 -0.02 5.92 16 35 H 0.20 6.03 8.06 -2.91 -0.02 6.01 16 36 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 2.82 8.07 -2.39 -0.02 2.80 16 38 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 39 H 0.22 4.25 8.06 -2.91 -0.02 4.22 16 40 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 43 H 0.15 1.46 7.76 -2.91 -0.02 1.44 16 Total: -1.00 -77.07 372.19 3.84 -73.23 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.29 Total: 20.08 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 8.28 Total: 7.08 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -6.72 Total: -128.14 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.04 Total: -16.71 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -77.07 3.84 -73.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172091260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.974 kcal (2) G-P(sol) polarization free energy of solvation -77.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds