Wall clock time and date at job start Sat Apr 11 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46983 * 2 1 4 4 O 1.42900 * 109.47190 * 119.99571 * 2 1 3 5 5 C 1.42903 * 113.99587 * 270.00327 * 4 2 1 6 6 C 1.53006 * 109.46579 * 179.97438 * 5 4 2 7 7 H 1.08995 * 110.27695 * 304.36316 * 6 5 4 8 8 C 1.54952 * 110.30855 * 182.16450 * 6 5 4 9 9 C 1.55446 * 100.98878 * 204.69336 * 8 6 5 10 10 C 1.54378 * 102.19011 * 34.03904 * 9 8 6 11 11 O 1.43239 * 107.66422 * 338.74225 * 10 9 8 12 12 C 1.50702 * 109.47451 * 239.99716 * 2 1 3 13 13 O 1.21277 * 119.99712 * 253.19695 * 12 2 1 14 14 N 1.34774 * 119.99680 * 73.19271 * 12 2 1 15 15 C 1.46509 * 119.99666 * 186.55394 * 14 12 2 16 16 C 1.50703 * 109.46571 * 90.00064 * 15 14 12 17 17 H 1.07996 * 120.00462 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99258 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00437 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99741 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46959 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46816 * 120.00025 * 20 18 16 23 23 H 1.48495 * 109.47469 * 240.00290 * 20 18 16 24 24 C 1.46493 * 120.00494 * 6.55642 * 14 12 2 25 25 C 1.52999 * 109.47005 * 95.87364 * 24 14 12 26 26 F 1.39896 * 109.47239 * 60.00186 * 25 24 14 27 27 F 1.39907 * 109.47238 * 180.02562 * 25 24 14 28 28 F 1.39898 * 109.47246 * 300.00093 * 25 24 14 29 29 H 1.08995 * 109.47053 * 175.26243 * 1 2 3 30 30 H 1.08996 * 109.47471 * 295.26573 * 1 2 3 31 31 H 1.09007 * 109.47248 * 55.26516 * 1 2 3 32 32 H 1.08997 * 109.47491 * 59.99981 * 5 4 2 33 33 H 1.09001 * 109.47223 * 299.99402 * 5 4 2 34 34 H 1.09003 * 111.12275 * 322.56190 * 8 6 5 35 35 H 1.09002 * 111.12333 * 86.71857 * 8 6 5 36 36 H 1.09000 * 110.83682 * 275.88735 * 9 8 6 37 37 H 1.09004 * 110.92672 * 152.22677 * 9 8 6 38 38 H 1.08996 * 109.83474 * 219.18350 * 10 9 8 39 39 H 1.09003 * 109.83102 * 98.29767 * 10 9 8 40 40 H 1.08990 * 109.47034 * 210.00091 * 15 14 12 41 41 H 1.09004 * 109.46716 * 330.00453 * 15 14 12 42 42 H 0.97006 * 120.00126 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.47567 * 215.87204 * 24 14 12 44 44 H 1.09002 * 109.47093 * 335.87533 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2000 0.1832 2.2940 6 6 2.7078 -0.6405 3.4792 7 1 2.0221 -1.4610 3.6905 8 6 2.8729 0.2605 4.7290 9 6 3.9418 -0.5355 5.5291 10 6 4.8101 -1.1375 4.4035 11 8 4.0237 -1.1481 3.2064 12 6 2.0324 -0.7105 -1.2304 13 8 2.5208 -1.8164 -1.1350 14 7 1.9389 -0.1168 -2.4367 15 6 2.2931 -0.8602 -3.6485 16 6 1.0716 -1.5643 -4.1808 17 1 0.1260 -1.4673 -3.6681 18 6 1.1611 -2.3313 -5.3230 19 7 2.3124 -2.4490 -5.9475 20 14 -0.3528 -3.2047 -5.9825 21 1 -1.5140 -2.9141 -5.1038 22 1 -0.6411 -2.7248 -7.3579 23 1 -0.1069 -4.6689 -6.0104 24 6 1.4831 1.2719 -2.5364 25 6 2.6953 2.2032 -2.5998 26 9 3.4697 1.8850 -3.7206 27 9 2.2601 3.5295 -2.6944 28 9 3.4646 2.0469 -1.4418 29 1 -0.3633 -1.0241 -0.0849 30 1 -0.3634 0.4386 0.9293 31 1 -0.3634 0.5856 -0.8446 32 1 1.2537 0.6549 2.5588 33 1 2.9319 0.9516 2.0449 34 1 3.2439 1.2482 4.4549 35 1 1.9390 0.3345 5.2861 36 1 3.4757 -1.3222 6.1223 37 1 4.5313 0.1299 6.1600 38 1 5.1002 -2.1552 4.6643 39 1 5.7002 -0.5258 4.2558 40 1 2.6710 -0.1688 -4.4014 41 1 3.0621 -1.5956 -3.4117 42 1 2.3755 -2.9890 -6.7509 43 1 0.8838 1.3938 -3.4386 44 1 0.8797 1.5198 -1.6631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177625850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:31 Heat of formation + Delta-G solvation = -277.411916 kcal Electronic energy + Delta-G solvation = -31460.495733 eV Core-core repulsion = 26577.406972 eV Total energy + Delta-G solvation = -4883.088760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.83476 -47.39929 -47.26009 -39.85922 -39.37278 -37.29213 -35.28376 -32.92822 -32.40026 -31.79199 -30.17460 -29.27027 -27.11737 -25.71768 -24.16605 -23.28558 -22.27228 -21.81556 -21.43591 -19.18702 -18.30909 -18.13844 -17.60119 -17.22536 -16.95742 -16.42597 -16.13033 -15.76860 -15.39318 -15.17970 -14.70961 -14.59540 -14.25252 -14.15958 -14.06968 -13.76396 -13.56497 -13.52862 -13.43088 -13.42298 -12.99126 -12.84348 -12.62273 -12.19646 -12.08119 -12.01641 -11.97542 -11.75601 -11.59659 -11.31440 -11.26250 -11.18437 -11.01573 -10.93596 -10.64592 -10.21960 -9.76972 -9.71868 -9.58078 -8.88983 -8.47866 -8.00140 -6.08674 -4.14713 2.80137 3.12333 3.28048 3.31888 3.36530 3.39796 3.62534 3.81407 4.09889 4.18830 4.22133 4.40622 4.45074 4.58126 4.68672 4.80584 4.89633 4.92952 5.00450 5.11952 5.15886 5.17793 5.26378 5.27690 5.32338 5.37968 5.49165 5.51625 5.58519 5.63796 5.70288 5.73475 5.89241 6.19235 6.78622 6.94439 7.21206 7.29549 7.41211 7.86117 8.07970 8.14461 8.77746 8.92102 9.50492 10.99660 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011890 B = 0.003514 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.399534 B = 7965.760050 C = 9251.195105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.064 3.936 3 H 0.078 0.922 4 O -0.344 6.344 5 C 0.059 3.941 6 C 0.085 3.915 7 H 0.080 0.920 8 C -0.150 4.150 9 C -0.154 4.154 10 C 0.046 3.954 11 O -0.364 6.364 12 C 0.517 3.483 13 O -0.496 6.496 14 N -0.596 5.596 15 C 0.240 3.760 16 C -0.534 4.534 17 H 0.060 0.940 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.900 3.100 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.067 3.933 25 C 0.428 3.572 26 F -0.171 7.171 27 F -0.188 7.188 28 F -0.188 7.188 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.264 0.736 43 H 0.130 0.870 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 12.041 19.074 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 H 0.096 0.904 4 O -0.262 6.262 5 C -0.018 4.018 6 C 0.027 3.973 7 H 0.098 0.902 8 C -0.187 4.187 9 C -0.192 4.192 10 C -0.031 4.031 11 O -0.283 6.283 12 C 0.302 3.698 13 O -0.368 6.368 14 N -0.330 5.330 15 C 0.122 3.878 16 C -0.572 4.572 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.061 4.061 25 C 0.371 3.629 26 F -0.153 7.153 27 F -0.170 7.170 28 F -0.169 7.169 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.148 0.852 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.329 11.028 18.768 21.809 hybrid contribution -0.669 0.143 -0.274 0.737 sum -1.998 11.172 18.494 21.699 Atomic orbital electron populations 1.22288 0.93681 1.04446 1.02538 1.22074 0.95003 0.96216 0.86460 0.90440 1.88127 1.86423 1.33144 1.18486 1.22757 0.99273 0.93061 0.86683 1.22969 0.86196 0.95559 0.92574 0.90208 1.23281 1.00125 0.99563 0.95767 1.23137 0.97573 1.00109 0.98389 1.23144 0.94614 1.00787 0.84515 1.88626 1.23128 1.85413 1.31144 1.20102 0.79385 0.86776 0.83531 1.90717 1.41649 1.19388 1.85027 1.48140 1.66229 1.09791 1.08812 1.19563 0.97241 0.92024 0.78930 1.21423 0.95492 1.30473 1.09860 0.92135 1.24938 0.96319 0.96172 0.96540 1.69948 1.24053 1.39787 1.18983 0.86421 0.82705 0.79591 0.78554 1.19758 1.20938 1.20831 1.22761 0.91927 0.83272 1.08170 1.21694 0.87061 0.80218 0.73896 1.93228 1.77380 1.92345 1.52324 1.93155 1.89554 1.38280 1.96024 1.93152 1.78228 1.95437 1.50096 0.90538 0.91483 0.90733 0.91998 0.92481 0.90038 0.89555 0.90405 0.89926 0.91413 0.91382 0.93798 0.93121 0.92614 0.85209 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 9.22 37.16 0.34 -1.86 16 2 C 0.06 1.03 2.28 -27.88 -0.06 0.96 16 3 H 0.08 1.05 5.63 -51.93 -0.29 0.76 16 4 O -0.34 -5.93 9.55 -58.14 -0.56 -6.49 16 5 C 0.06 0.73 5.46 37.16 0.20 0.93 16 6 C 0.08 0.98 3.73 -25.70 -0.10 0.89 16 7 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 8 C -0.15 -1.13 6.57 -24.40 -0.16 -1.29 16 9 C -0.15 -1.10 7.03 -24.71 -0.17 -1.28 16 10 C 0.05 0.47 7.79 37.88 0.30 0.76 16 11 O -0.36 -5.36 11.03 -36.86 -0.41 -5.77 16 12 C 0.52 11.08 6.76 -10.99 -0.07 11.01 16 13 O -0.50 -13.22 16.10 -14.00 -0.23 -13.44 16 14 N -0.60 -12.32 2.38 -175.06 -0.42 -12.74 16 15 C 0.24 6.17 5.00 -5.19 -0.03 6.15 16 16 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 17 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 20 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.07 1.01 5.04 -4.05 -0.02 0.99 16 25 C 0.43 6.59 3.29 37.16 0.12 6.72 16 26 F -0.17 -3.13 15.69 2.25 0.04 -3.10 16 27 F -0.19 -2.54 17.32 2.25 0.04 -2.50 16 28 F -0.19 -3.00 15.82 2.25 0.04 -2.97 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.07 0.65 7.79 -51.93 -0.40 0.25 16 31 H 0.07 0.83 6.21 -51.93 -0.32 0.51 16 32 H 0.06 0.56 7.79 -51.93 -0.40 0.16 16 33 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.04 1.14 6.73 -51.93 -0.35 0.79 16 41 H 0.05 1.50 7.34 -51.93 -0.38 1.12 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.13 1.85 8.11 -51.93 -0.42 1.43 16 44 H 0.11 1.29 4.42 -51.93 -0.23 1.06 16 LS Contribution 372.31 15.07 5.61 5.61 Total: -1.00 -35.36 372.31 -6.39 -41.74 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.15 Total: -2.03 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -0.07 Total: 10.71 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.32 Total: -38.17 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -1.19 Total: -25.70 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 0.11 Total: -8.57 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.36 -6.39 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177625850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -235.669 kcal (2) G-P(sol) polarization free energy of solvation -35.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds