Wall clock time and date at job start Sat Apr 11 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46983 * 2 1 4 4 O 1.42900 * 109.47190 * 119.99571 * 2 1 3 5 5 C 1.42903 * 113.99587 * 270.00327 * 4 2 1 6 6 C 1.53006 * 109.46579 * 179.97438 * 5 4 2 7 7 H 1.08995 * 110.27695 * 304.36316 * 6 5 4 8 8 C 1.54952 * 110.30855 * 182.16450 * 6 5 4 9 9 C 1.55446 * 100.98878 * 204.69336 * 8 6 5 10 10 C 1.54378 * 102.19011 * 34.03904 * 9 8 6 11 11 O 1.43239 * 107.66422 * 338.74225 * 10 9 8 12 12 C 1.50702 * 109.47451 * 239.99716 * 2 1 3 13 13 O 1.21277 * 119.99712 * 253.19695 * 12 2 1 14 14 N 1.34774 * 119.99680 * 73.19271 * 12 2 1 15 15 C 1.46509 * 119.99666 * 186.55394 * 14 12 2 16 16 C 1.50703 * 109.46571 * 90.00064 * 15 14 12 17 17 H 1.07996 * 120.00462 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99258 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00437 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99741 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46959 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46816 * 120.00025 * 20 18 16 23 23 H 1.48495 * 109.47469 * 240.00290 * 20 18 16 24 24 C 1.46493 * 120.00494 * 6.55642 * 14 12 2 25 25 C 1.52999 * 109.47005 * 95.87364 * 24 14 12 26 26 F 1.39896 * 109.47239 * 60.00186 * 25 24 14 27 27 F 1.39907 * 109.47238 * 180.02562 * 25 24 14 28 28 F 1.39898 * 109.47246 * 300.00093 * 25 24 14 29 29 H 1.08995 * 109.47053 * 175.26243 * 1 2 3 30 30 H 1.08996 * 109.47471 * 295.26573 * 1 2 3 31 31 H 1.09007 * 109.47248 * 55.26516 * 1 2 3 32 32 H 1.08997 * 109.47491 * 59.99981 * 5 4 2 33 33 H 1.09001 * 109.47223 * 299.99402 * 5 4 2 34 34 H 1.09003 * 111.12275 * 322.56190 * 8 6 5 35 35 H 1.09002 * 111.12333 * 86.71857 * 8 6 5 36 36 H 1.09000 * 110.83682 * 275.88735 * 9 8 6 37 37 H 1.09004 * 110.92672 * 152.22677 * 9 8 6 38 38 H 1.08996 * 109.83474 * 219.18350 * 10 9 8 39 39 H 1.09003 * 109.83102 * 98.29767 * 10 9 8 40 40 H 1.08990 * 109.47034 * 210.00091 * 15 14 12 41 41 H 1.09004 * 109.46716 * 330.00453 * 15 14 12 42 42 H 0.97006 * 120.00126 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.47567 * 215.87204 * 24 14 12 44 44 H 1.09002 * 109.47093 * 335.87533 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2000 0.1832 2.2940 6 6 2.7078 -0.6405 3.4792 7 1 2.0221 -1.4610 3.6905 8 6 2.8729 0.2605 4.7290 9 6 3.9418 -0.5355 5.5291 10 6 4.8101 -1.1375 4.4035 11 8 4.0237 -1.1481 3.2064 12 6 2.0324 -0.7105 -1.2304 13 8 2.5208 -1.8164 -1.1350 14 7 1.9389 -0.1168 -2.4367 15 6 2.2931 -0.8602 -3.6485 16 6 1.0716 -1.5643 -4.1808 17 1 0.1260 -1.4673 -3.6681 18 6 1.1611 -2.3313 -5.3230 19 7 2.3124 -2.4490 -5.9475 20 14 -0.3528 -3.2047 -5.9825 21 1 -1.5140 -2.9141 -5.1038 22 1 -0.6411 -2.7248 -7.3579 23 1 -0.1069 -4.6689 -6.0104 24 6 1.4831 1.2719 -2.5364 25 6 2.6953 2.2032 -2.5998 26 9 3.4697 1.8850 -3.7206 27 9 2.2601 3.5295 -2.6944 28 9 3.4646 2.0469 -1.4418 29 1 -0.3633 -1.0241 -0.0849 30 1 -0.3634 0.4386 0.9293 31 1 -0.3634 0.5856 -0.8446 32 1 1.2537 0.6549 2.5588 33 1 2.9319 0.9516 2.0449 34 1 3.2439 1.2482 4.4549 35 1 1.9390 0.3345 5.2861 36 1 3.4757 -1.3222 6.1223 37 1 4.5313 0.1299 6.1600 38 1 5.1002 -2.1552 4.6643 39 1 5.7002 -0.5258 4.2558 40 1 2.6710 -0.1688 -4.4014 41 1 3.0621 -1.5956 -3.4117 42 1 2.3755 -2.9890 -6.7509 43 1 0.8838 1.3938 -3.4386 44 1 0.8797 1.5198 -1.6631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177625850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:30 Heat of formation + Delta-G solvation = -301.296424 kcal Electronic energy + Delta-G solvation = -31461.531443 eV Core-core repulsion = 26577.406972 eV Total energy + Delta-G solvation = -4884.124470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.11446 -48.64014 -48.59542 -41.23893 -40.40708 -38.55632 -37.02493 -34.93632 -33.26951 -32.88012 -31.20837 -30.75847 -28.93131 -26.62206 -25.74203 -24.70911 -23.78028 -22.53443 -22.27282 -20.69914 -19.60862 -19.44787 -19.12397 -18.45684 -18.19325 -17.94335 -17.45144 -16.93588 -16.80570 -16.40272 -16.19085 -15.86346 -15.58827 -15.50813 -15.39531 -15.03374 -14.79005 -14.76202 -14.73932 -14.43946 -14.31133 -14.14495 -13.89703 -13.67401 -13.35775 -13.18598 -13.15536 -12.98156 -12.78980 -12.65432 -12.59011 -12.46344 -12.21769 -12.14700 -12.05955 -11.73744 -11.67439 -10.96684 -10.64902 -10.48959 -10.44019 -9.81578 -8.22851 -6.37685 1.36714 1.39294 1.42181 1.52977 1.68166 1.92350 2.39334 2.60209 2.81939 2.90324 2.97962 3.08495 3.18854 3.49972 3.56405 3.73415 3.87182 3.93866 3.98125 4.04412 4.15356 4.25654 4.29093 4.37947 4.49271 4.58588 4.65399 4.75084 4.81828 4.88715 4.92143 4.98094 5.01756 5.19111 5.19633 5.25226 5.38442 5.72857 6.00710 6.01798 6.19667 6.42249 6.71665 7.15481 7.34411 8.85905 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011890 B = 0.003514 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.399534 B = 7965.760050 C = 9251.195105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.074 3.926 3 H 0.107 0.893 4 O -0.384 6.384 5 C 0.052 3.948 6 C 0.072 3.928 7 H 0.071 0.929 8 C -0.137 4.137 9 C -0.146 4.146 10 C 0.033 3.967 11 O -0.413 6.413 12 C 0.505 3.495 13 O -0.566 6.566 14 N -0.599 5.599 15 C 0.257 3.743 16 C -0.543 4.543 17 H 0.067 0.933 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.971 3.029 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.287 1.287 24 C 0.063 3.937 25 C 0.432 3.568 26 F -0.193 7.193 27 F -0.170 7.170 28 F -0.191 7.191 29 H 0.050 0.950 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.036 0.964 41 H -0.004 1.004 42 H 0.267 0.733 43 H 0.144 0.856 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 14.519 21.007 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.013 3.987 3 H 0.125 0.875 4 O -0.303 6.303 5 C -0.024 4.024 6 C 0.014 3.986 7 H 0.089 0.911 8 C -0.174 4.174 9 C -0.183 4.183 10 C -0.043 4.043 11 O -0.333 6.333 12 C 0.293 3.707 13 O -0.443 6.443 14 N -0.331 5.331 15 C 0.137 3.863 16 C -0.582 4.582 17 H 0.085 0.915 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.796 3.204 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.213 1.213 24 C -0.063 4.063 25 C 0.376 3.624 26 F -0.175 7.175 27 F -0.152 7.152 28 F -0.172 7.172 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.014 0.986 42 H 0.076 0.924 43 H 0.162 0.838 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.092 13.580 20.726 25.114 hybrid contribution 0.280 -0.597 -0.836 1.065 sum -3.812 12.983 19.890 24.056 Atomic orbital electron populations 1.22329 0.90659 1.03750 1.05689 1.22080 0.96941 0.96051 0.83631 0.87530 1.88101 1.86893 1.35482 1.19809 1.23111 1.01367 0.92672 0.85256 1.23228 0.84862 0.96265 0.94205 0.91094 1.23277 1.01480 0.98919 0.93765 1.23142 0.97162 1.00579 0.97457 1.23360 0.95052 1.01206 0.84655 1.88579 1.24893 1.86053 1.33820 1.21328 0.77889 0.86290 0.85150 1.90673 1.44763 1.22696 1.86202 1.47985 1.65933 1.11843 1.07342 1.18975 0.95535 0.91203 0.80634 1.21734 0.95959 1.30603 1.09900 0.91498 1.25911 0.99499 0.96929 0.96947 1.70085 1.26435 1.40731 1.19572 0.85308 0.78999 0.77671 0.78457 1.18320 1.19571 1.21329 1.23170 0.92169 0.79792 1.11175 1.21609 0.86631 0.80998 0.73149 1.93194 1.78058 1.92642 1.53559 1.93193 1.89233 1.36840 1.95895 1.93151 1.78422 1.95535 1.50124 0.93051 0.87278 0.88689 0.87871 0.92489 0.89134 0.86879 0.89541 0.87662 0.91674 0.91091 0.94583 0.98619 0.92438 0.83816 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 9.22 71.98 0.66 -3.06 16 2 C 0.07 2.26 2.28 29.85 0.07 2.33 16 3 H 0.11 2.56 5.63 -2.39 -0.01 2.55 16 4 O -0.38 -13.08 9.55 -127.08 -1.21 -14.29 16 5 C 0.05 1.17 5.46 71.98 0.39 1.56 16 6 C 0.07 1.59 3.73 31.26 0.12 1.71 16 7 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 8 C -0.14 -1.66 6.57 32.10 0.21 -1.45 16 9 C -0.15 -1.75 7.03 31.90 0.22 -1.53 16 10 C 0.03 0.68 7.79 72.45 0.56 1.24 16 11 O -0.41 -12.50 11.03 -147.42 -1.63 -14.12 16 12 C 0.50 22.15 6.76 87.66 0.59 22.74 16 13 O -0.57 -32.16 16.10 15.68 0.25 -31.91 16 14 N -0.60 -25.05 2.38 -826.16 -1.96 -27.01 16 15 C 0.26 13.82 5.00 85.63 0.43 14.25 16 16 C -0.54 -30.37 9.39 25.60 0.24 -30.13 16 17 H 0.07 3.56 7.81 -2.91 -0.02 3.54 16 18 C 0.01 0.36 5.46 84.66 0.46 0.82 16 19 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 20 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 C 0.06 1.77 5.04 86.38 0.44 2.21 16 25 C 0.43 12.67 3.29 71.98 0.24 12.91 16 26 F -0.19 -7.10 15.69 44.97 0.71 -6.39 16 27 F -0.17 -4.10 17.32 44.97 0.78 -3.32 16 28 F -0.19 -5.85 15.82 44.97 0.71 -5.14 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.11 1.54 7.79 -2.39 -0.02 1.52 16 31 H 0.09 1.69 6.21 -2.38 -0.01 1.68 16 32 H 0.10 1.42 7.79 -2.39 -0.02 1.40 16 33 H 0.06 1.26 8.09 -2.39 -0.02 1.24 16 34 H 0.09 0.95 8.06 -2.39 -0.02 0.93 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.04 1.97 6.73 -2.39 -0.02 1.95 16 41 H 0.00 -0.28 7.34 -2.38 -0.02 -0.30 16 42 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 43 H 0.14 3.74 8.11 -2.39 -0.02 3.72 16 44 H 0.16 2.98 4.42 -2.39 -0.01 2.97 16 Total: -1.00 -84.40 372.31 5.62 -78.78 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.02 Total: 9.78 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 4.64 Total: 23.59 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.68 Total: -83.14 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -2.59 Total: -60.32 kcal Atomic # 9 Polarization: -17.05 SS G_CDS: 2.20 Total: -14.86 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -84.40 5.62 -78.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177625850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.517 kcal (2) G-P(sol) polarization free energy of solvation -84.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -306.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -301.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds