Wall clock time and date at job start Sat Apr 11 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46861 * 2 1 4 4 O 1.42906 * 109.47030 * 240.00064 * 2 1 3 5 5 C 1.42899 * 113.99689 * 89.99885 * 4 2 1 6 6 C 1.53006 * 109.47019 * 179.97438 * 5 4 2 7 7 H 1.08996 * 110.26912 * 54.30065 * 6 5 4 8 8 C 1.54949 * 110.30918 * 176.38832 * 6 5 4 9 9 C 1.55414 * 100.88791 * 155.29039 * 8 6 5 10 10 C 1.54385 * 102.31445 * 325.99076 * 9 8 6 11 11 O 1.43242 * 107.58105 * 21.28496 * 10 9 8 12 12 C 1.50700 * 109.47335 * 120.00238 * 2 1 3 13 13 O 1.21275 * 120.00141 * 106.89544 * 12 2 1 14 14 N 1.34780 * 119.99889 * 286.89760 * 12 2 1 15 15 C 1.46498 * 119.99759 * 5.11446 * 14 12 2 16 16 C 1.50703 * 109.47117 * 95.65291 * 15 14 12 17 17 H 1.07994 * 120.00254 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99785 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99987 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99819 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47352 * 59.99674 * 20 18 16 22 22 H 1.48502 * 109.47252 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46876 * 299.99695 * 20 18 16 24 24 C 1.46492 * 119.99881 * 185.11237 * 14 12 2 25 25 C 1.53007 * 109.47052 * 85.90868 * 24 14 12 26 26 F 1.39892 * 109.46936 * 64.81383 * 25 24 14 27 27 F 1.39901 * 109.47060 * 184.81265 * 25 24 14 28 28 F 1.39900 * 109.46688 * 304.81252 * 25 24 14 29 29 H 1.08998 * 109.46956 * 187.53439 * 1 2 3 30 30 H 1.08995 * 109.47421 * 307.53248 * 1 2 3 31 31 H 1.09006 * 109.47251 * 67.53230 * 1 2 3 32 32 H 1.08998 * 109.47582 * 299.99765 * 5 4 2 33 33 H 1.09008 * 109.47420 * 60.00324 * 5 4 2 34 34 H 1.08998 * 111.12556 * 273.28226 * 8 6 5 35 35 H 1.09001 * 111.12428 * 37.44832 * 8 6 5 36 36 H 1.09008 * 110.88255 * 207.75421 * 9 8 6 37 37 H 1.09000 * 110.93691 * 84.25684 * 9 8 6 38 38 H 1.09000 * 109.83328 * 261.77905 * 10 9 8 39 39 H 1.08991 * 109.90502 * 140.83934 * 10 9 8 40 40 H 1.09006 * 109.47047 * 215.65139 * 15 14 12 41 41 H 1.09004 * 109.47443 * 335.65269 * 15 14 12 42 42 H 0.97005 * 119.99872 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.46905 * 205.90327 * 24 14 12 44 44 H 1.08996 * 109.47437 * 325.90762 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7090 -0.6405 -3.4789 7 1 2.0363 -1.4753 -3.6753 8 6 2.8396 0.2528 -4.7382 9 6 3.9141 -0.5299 -5.5433 10 6 4.8090 -1.1056 -4.4247 11 8 4.0372 -1.1212 -3.2181 12 6 2.0324 -0.7104 1.2304 13 8 2.5223 -1.8157 1.1349 14 7 1.9371 -0.1175 2.4370 15 6 1.2454 1.1671 2.5693 16 6 -0.1818 0.9281 2.9901 17 1 -0.5381 -0.0798 3.1432 18 6 -1.0328 1.9963 3.1795 19 7 -0.5988 3.2237 2.9936 20 14 -2.8016 1.7001 3.7018 21 1 -2.8205 0.9906 5.0062 22 1 -3.5029 3.0022 3.8358 23 1 -3.4880 0.8719 2.6778 24 6 2.5253 -0.7576 3.6161 25 6 4.0006 -0.3670 3.7259 26 9 4.1027 1.0089 3.9575 27 9 4.5898 -1.0634 4.7866 28 9 4.6582 -0.6894 2.5339 29 1 -0.3633 -1.0188 0.1347 30 1 -0.3634 0.6260 0.8149 31 1 -0.3634 0.3928 -0.9497 32 1 1.2537 0.6547 -2.5589 33 1 2.9319 0.9514 -2.0451 34 1 1.8972 0.3031 -5.2836 35 1 3.1941 1.2500 -4.4774 36 1 4.4821 0.1412 -6.1876 37 1 3.4580 -1.3303 -6.1258 38 1 5.6882 -0.4749 -4.2930 39 1 5.1162 -2.1196 -4.6802 40 1 1.7488 1.7751 3.3210 41 1 1.2595 1.6877 1.6118 42 1 -1.1974 3.9753 3.1273 43 1 1.9951 -0.4293 4.5102 44 1 2.4422 -1.8402 3.5213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177625863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:34 Heat of formation + Delta-G solvation = -283.022775 kcal Electronic energy + Delta-G solvation = -31492.120712 eV Core-core repulsion = 26608.788647 eV Total energy + Delta-G solvation = -4883.332066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.61645 -47.17678 -47.05619 -39.75272 -39.33096 -37.13720 -35.29043 -32.88816 -32.32118 -31.76784 -30.22032 -28.82178 -27.16878 -25.52044 -23.93392 -23.17135 -22.31857 -21.76305 -21.29818 -19.04213 -18.07091 -17.98445 -17.40743 -17.06808 -16.68027 -16.38310 -16.19014 -15.75788 -15.36679 -14.93963 -14.66221 -14.56028 -14.04154 -13.99573 -13.78776 -13.61551 -13.55566 -13.32274 -13.25434 -13.24642 -12.99645 -12.56466 -12.40584 -12.02937 -11.94627 -11.86247 -11.79580 -11.68208 -11.49568 -11.30529 -11.16293 -11.02426 -10.97664 -10.82646 -10.61865 -10.28441 -9.94954 -9.51032 -9.47679 -8.96631 -8.66004 -8.08759 -6.32180 -4.39765 2.93469 3.16326 3.17178 3.23081 3.27392 3.44587 3.72319 4.02263 4.21792 4.28968 4.33270 4.51024 4.65145 4.72888 4.83778 5.00627 5.04320 5.08424 5.16885 5.27882 5.39630 5.42862 5.49814 5.52248 5.58488 5.61290 5.66550 5.73403 5.78143 5.80404 6.00283 6.27413 6.38553 6.43033 6.92626 7.00104 7.07763 7.22606 7.47401 7.61140 7.86221 8.02677 8.62251 8.79368 9.26761 10.74196 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009368 B = 0.004103 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.207459 B = 6822.379026 C = 9089.857194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 H 0.083 0.917 4 O -0.356 6.356 5 C 0.062 3.938 6 C 0.085 3.915 7 H 0.079 0.921 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.366 6.366 12 C 0.525 3.475 13 O -0.532 6.532 14 N -0.597 5.597 15 C 0.230 3.770 16 C -0.543 4.543 17 H 0.066 0.934 18 C 0.069 3.931 19 N -0.885 5.885 20 Si 0.897 3.103 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.085 3.915 25 C 0.430 3.570 26 F -0.182 7.182 27 F -0.190 7.190 28 F -0.178 7.178 29 H 0.057 0.943 30 H 0.122 0.878 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.268 0.732 43 H 0.127 0.873 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.608 -2.867 -10.613 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.022 3.978 3 H 0.101 0.899 4 O -0.274 6.274 5 C -0.015 4.015 6 C 0.028 3.972 7 H 0.097 0.903 8 C -0.187 4.187 9 C -0.192 4.192 10 C -0.030 4.030 11 O -0.285 6.285 12 C 0.312 3.688 13 O -0.408 6.408 14 N -0.330 5.330 15 C 0.111 3.889 16 C -0.582 4.582 17 H 0.084 0.916 18 C -0.136 4.136 19 N -0.522 5.522 20 Si 0.724 3.276 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.042 4.042 25 C 0.374 3.626 26 F -0.163 7.163 27 F -0.172 7.172 28 F -0.160 7.160 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.145 0.855 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.945 -3.493 -10.492 12.555 hybrid contribution -0.833 0.497 0.145 0.981 sum 5.112 -2.996 -10.347 11.924 Atomic orbital electron populations 1.22571 0.92481 1.04296 1.04716 1.21825 0.96014 0.95581 0.84402 0.89882 1.88030 1.86727 1.33761 1.18870 1.22695 0.99384 0.92887 0.86581 1.22973 0.85569 0.95871 0.92795 0.90308 1.23272 1.00100 0.99712 0.95664 1.23125 0.97455 1.00260 0.98378 1.23131 0.94736 1.00677 0.84460 1.88602 1.22767 1.86421 1.30697 1.20348 0.78006 0.85974 0.84450 1.90649 1.44543 1.19512 1.86124 1.48061 1.55051 1.24994 1.04878 1.19729 0.91868 0.78037 0.99226 1.21386 0.95068 0.93625 1.48083 0.91600 1.24939 0.99047 0.94825 0.94746 1.69910 1.36473 0.98245 1.47565 0.86563 0.83922 0.77601 0.79515 1.19988 1.21096 1.19887 1.22362 0.86406 1.01967 0.93498 1.21592 0.92734 0.74870 0.73436 1.93183 1.96995 1.31849 1.94309 1.93137 1.86570 1.79401 1.58058 1.93212 1.83558 1.92381 1.46809 0.92362 0.85948 0.92734 0.91835 0.92659 0.89502 0.89976 0.90009 0.90480 0.91471 0.91543 0.93883 0.93652 0.92194 0.85521 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 9.20 37.16 0.34 -3.01 16 2 C 0.08 1.58 2.30 -27.88 -0.06 1.52 16 3 H 0.08 1.52 6.55 -51.93 -0.34 1.18 16 4 O -0.36 -6.79 9.55 -57.56 -0.55 -7.34 16 5 C 0.06 0.90 5.45 37.16 0.20 1.10 16 6 C 0.09 1.11 3.72 -25.70 -0.10 1.01 16 7 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 8 C -0.15 -1.35 6.58 -24.42 -0.16 -1.51 16 9 C -0.15 -1.24 7.02 -24.72 -0.17 -1.42 16 10 C 0.05 0.50 7.80 37.88 0.30 0.80 16 11 O -0.37 -5.64 11.04 -35.96 -0.40 -6.04 16 12 C 0.52 11.23 6.35 -10.98 -0.07 11.16 16 13 O -0.53 -12.66 15.48 -14.00 -0.22 -12.88 16 14 N -0.60 -12.17 2.41 -175.06 -0.42 -12.59 16 15 C 0.23 5.08 4.64 -5.19 -0.02 5.06 16 16 C -0.54 -12.80 7.01 -34.44 -0.24 -13.04 16 17 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.88 -22.64 13.29 55.43 0.74 -21.91 16 20 Si 0.90 19.17 29.54 -169.99 -5.02 14.15 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 C 0.08 1.51 5.48 -4.04 -0.02 1.48 16 25 C 0.43 7.66 3.30 37.16 0.12 7.78 16 26 F -0.18 -3.37 16.83 2.25 0.04 -3.34 16 27 F -0.19 -3.11 17.32 2.25 0.04 -3.08 16 28 F -0.18 -3.55 15.86 2.25 0.04 -3.51 16 29 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 30 H 0.12 2.51 4.38 -51.93 -0.23 2.28 16 31 H 0.05 0.86 7.75 -51.93 -0.40 0.46 16 32 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 33 H 0.06 0.79 8.09 -51.92 -0.42 0.37 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.70 8.06 -51.93 -0.42 0.29 16 36 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.04 1.01 7.64 -51.93 -0.40 0.61 16 41 H 0.05 1.02 5.47 -51.93 -0.28 0.74 16 42 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 43 H 0.13 2.06 8.04 -51.93 -0.42 1.64 16 44 H 0.11 1.96 7.48 -51.93 -0.39 1.57 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -29.60 371.26 -6.35 -35.95 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.20 Total: 2.47 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 0.01 Total: 12.51 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.31 Total: -34.50 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -1.16 Total: -26.25 kcal Atomic # 9 Polarization: -10.04 SS G_CDS: 0.11 Total: -9.92 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.60 -6.35 -35.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177625863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -247.072 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -283.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds