Wall clock time and date at job start Sat Apr 11 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00329 * 64.73174 * 5 3 2 8 8 N 1.31514 * 120.00396 * 187.25917 * 7 5 3 9 9 Si 1.86806 * 119.99749 * 7.26776 * 7 5 3 10 10 H 1.48507 * 109.46731 * 269.99746 * 9 7 5 11 11 H 1.48501 * 109.47091 * 29.99201 * 9 7 5 12 12 H 1.48493 * 109.47250 * 149.99769 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21581 * 120.00118 * 359.97438 * 14 13 3 16 16 C 1.47641 * 119.99730 * 179.97438 * 14 13 3 17 17 C 1.39731 * 120.07734 * 359.72531 * 16 14 13 18 18 C 1.37704 * 119.91866 * 179.69370 * 17 16 14 19 19 C 1.39080 * 120.07970 * 0.58062 * 18 17 16 20 20 N 1.39731 * 119.92559 * 179.69556 * 19 18 17 21 21 N 1.39909 * 125.83936 * 144.71376 * 20 19 18 22 22 C 1.30354 * 109.25498 * 179.80943 * 21 20 19 23 23 C 1.41453 * 108.38419 * 0.44546 * 22 21 20 24 24 C 1.43196 * 126.47375 * 179.74958 * 23 22 21 25 25 N 8.65496 * 143.25769 * 256.87180 * 16 1 2 26 26 C 1.35870 * 125.83761 * 325.02005 * 20 19 18 27 27 N 1.38108 * 126.50433 * 359.96711 * 26 20 19 28 28 C 1.39088 * 120.15198 * 359.71962 * 19 18 17 29 29 C 1.37695 * 120.07857 * 359.97438 * 28 19 18 30 30 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 31 31 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 33 33 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 34 34 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 35 35 H 0.96997 * 119.99418 * 354.94858 * 8 7 5 36 36 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 37 37 H 1.07997 * 120.03645 * 0.02562 * 17 16 14 38 38 H 1.08004 * 119.95885 * 180.30043 * 18 17 16 39 39 H 1.07999 * 125.80952 * 180.16448 * 22 21 20 40 40 H 0.97003 * 120.00343 * 359.97438 * 27 26 20 41 41 H 0.97003 * 119.99522 * 179.97438 * 27 26 20 42 42 H 1.08004 * 119.95827 * 180.02562 * 28 19 18 43 43 H 1.08000 * 120.03952 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9700 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3382 2.6316 0.4504 16 6 0.0620 3.3178 2.6463 17 6 0.9580 3.3477 3.7182 18 6 0.6004 3.9666 4.8952 19 6 -0.6554 4.5508 5.0220 20 7 -1.0172 5.1724 6.2201 21 7 -1.8143 6.3158 6.3415 22 6 -1.9493 6.6136 7.6034 23 6 -1.2255 5.6666 8.3652 24 6 -1.1074 5.6331 9.7919 25 7 -1.0125 5.6086 10.9232 26 6 -0.6504 4.7731 7.4659 27 7 0.1419 3.6865 7.7803 28 6 -1.5520 4.5174 3.9593 29 6 -1.1988 3.9058 2.7773 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.9924 1.1426 -0.6139 36 1 2.2853 2.1184 1.9978 37 1 1.9317 2.8908 3.6217 38 1 1.2942 3.9943 5.7224 39 1 -2.5136 7.4448 7.9996 40 1 0.4945 3.1227 7.0741 41 1 0.3459 3.4872 8.7075 42 1 -2.5262 4.9725 4.0611 43 1 -1.8954 3.8806 1.9524 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183826425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:55 Heat of formation + Delta-G solvation = 100.506570 kcal Electronic energy + Delta-G solvation = -27756.068562 eV Core-core repulsion = 23803.118739 eV Total energy + Delta-G solvation = -3952.949823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14707 -40.10017 -38.48991 -36.68579 -35.68309 -35.40246 -33.85091 -32.61032 -31.80812 -31.20682 -29.66263 -29.45904 -27.31006 -24.69087 -23.71782 -22.53514 -22.19981 -21.75113 -20.79001 -19.77360 -19.32276 -18.40706 -18.09135 -17.14101 -16.69782 -16.37476 -16.03787 -15.61650 -15.16498 -14.95237 -14.68862 -14.21972 -14.05185 -13.90535 -13.64133 -13.47334 -13.31044 -13.09190 -12.97743 -12.76530 -12.57163 -12.45123 -12.30571 -11.98306 -11.87462 -11.58080 -11.19107 -11.02198 -10.79716 -10.55434 -10.38332 -9.89672 -9.80240 -9.47273 -9.45825 -8.98840 -8.69554 -8.60194 -8.48327 -8.22135 -6.63951 -4.32608 0.24392 0.92526 1.33113 1.53536 1.78392 2.41238 2.80994 2.98049 3.27389 3.30045 3.40059 3.53158 3.70778 3.72119 3.82730 4.24083 4.33965 4.35665 4.39656 4.55555 4.84543 4.93424 4.96500 5.11537 5.14296 5.16373 5.54434 5.60296 5.74990 5.93216 5.94015 5.97999 6.02906 6.08944 6.15318 6.33741 6.55066 6.59192 6.66405 6.79089 6.79483 6.91011 7.18514 7.21353 7.23673 7.37454 7.51926 8.13088 8.29122 8.57583 8.79515 9.38093 10.76687 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.002216 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.186957 B =12630.323683 C =13178.040173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.241 3.759 4 H 0.051 0.949 5 C -0.612 4.612 6 H 0.062 0.938 7 C 0.037 3.963 8 N -0.902 5.902 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.287 1.287 13 N -0.692 5.692 14 C 0.541 3.459 15 O -0.541 6.541 16 C -0.119 4.119 17 C -0.062 4.062 18 C -0.152 4.152 19 C 0.164 3.836 20 N -0.341 5.341 21 N -0.285 5.285 22 C 0.137 3.863 23 C -0.263 4.263 24 C 0.299 3.701 25 N -0.447 5.447 26 C 0.434 3.566 27 N -0.833 5.833 28 C -0.112 4.112 29 C -0.040 4.040 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.269 0.731 36 H 0.391 0.609 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.201 0.799 40 H 0.412 0.588 41 H 0.422 0.578 42 H 0.142 0.858 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.600 6.435 16.561 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.137 3.863 4 H 0.069 0.931 5 C -0.650 4.650 6 H 0.080 0.920 7 C -0.170 4.170 8 N -0.535 5.535 9 Si 0.876 3.124 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.213 1.213 13 N -0.340 5.340 14 C 0.326 3.674 15 O -0.420 6.420 16 C -0.123 4.123 17 C -0.081 4.081 18 C -0.173 4.173 19 C 0.072 3.928 20 N -0.122 5.122 21 N -0.101 5.101 22 C -0.056 4.056 23 C -0.284 4.284 24 C -0.015 4.015 25 N -0.125 5.125 26 C 0.200 3.800 27 N -0.381 5.381 28 C -0.132 4.132 29 C -0.060 4.060 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.225 0.775 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.217 0.783 40 H 0.245 0.755 41 H 0.255 0.745 42 H 0.160 0.840 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.207 6.037 14.787 20.725 hybrid contribution 0.862 0.138 2.511 2.659 sum -12.345 6.175 17.298 22.131 Atomic orbital electron populations 1.21904 0.97105 0.99122 1.02179 1.22255 0.94054 0.99753 1.01497 1.19311 0.96056 0.88605 0.82286 0.93106 1.22134 0.89559 1.48419 1.04871 0.92002 1.25703 0.97493 0.93537 1.00226 1.70840 1.04418 1.42252 1.36035 0.83956 0.75358 0.77215 0.75852 1.20653 1.19801 1.21323 1.46223 1.14221 1.55290 1.18234 1.18079 0.83040 0.79422 0.86817 1.90764 1.51079 1.59953 1.40251 1.20456 0.95484 1.01208 0.95140 1.21240 0.99400 0.96286 0.91202 1.20850 0.94066 1.02716 0.99686 1.17545 0.94000 0.96876 0.84372 1.45459 1.41816 1.22968 1.01935 1.77426 1.14470 0.99303 1.18855 1.23881 0.95356 0.97399 0.88962 1.15123 1.21138 1.06605 0.85501 1.24298 0.92753 0.93501 0.90979 1.81291 1.10948 1.08761 1.11478 1.18133 0.89103 0.87510 0.85221 1.41937 1.54813 1.28502 1.12876 1.20942 0.99719 1.00547 0.91999 1.21269 0.95321 0.92569 0.96828 0.92780 0.94863 0.93171 0.92083 0.92690 0.92108 0.77457 0.84104 0.84893 0.78279 0.75461 0.74518 0.83972 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.52 37.15 0.32 -2.41 16 2 C -0.14 -2.85 5.20 -26.74 -0.14 -2.99 16 3 C 0.24 5.37 1.81 -69.08 -0.13 5.24 16 4 H 0.05 1.26 6.07 -51.93 -0.32 0.95 16 5 C -0.61 -15.66 9.09 -34.44 -0.31 -15.97 16 6 H 0.06 1.64 7.95 -52.48 -0.42 1.23 16 7 C 0.04 0.99 5.42 -17.82 -0.10 0.90 16 8 N -0.90 -26.11 13.70 55.43 0.76 -25.35 16 9 Si 1.05 24.48 25.39 -169.99 -4.32 20.16 16 10 H -0.28 -6.19 6.73 56.52 0.38 -5.81 16 11 H -0.27 -6.14 6.38 56.52 0.36 -5.78 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.69 -12.59 4.98 -55.94 -0.28 -12.87 16 14 C 0.54 9.29 6.35 -12.42 -0.08 9.21 16 15 O -0.54 -10.91 13.48 5.29 0.07 -10.83 16 16 C -0.12 -1.53 5.88 -104.94 -0.62 -2.15 16 17 C -0.06 -0.62 9.53 -39.22 -0.37 -0.99 16 18 C -0.15 -1.28 8.39 -39.46 -0.33 -1.61 16 19 C 0.16 1.55 6.38 -83.63 -0.53 1.02 16 20 N -0.34 -3.11 3.73 -9.35 -0.03 -3.14 16 21 N -0.29 -2.68 12.21 30.88 0.38 -2.30 16 22 C 0.14 0.98 11.98 -16.96 -0.20 0.77 16 23 C -0.26 -2.06 6.01 -106.39 -0.64 -2.70 16 24 C 0.30 2.70 15.57 -22.49 -0.35 2.35 16 25 N -0.45 -5.01 18.53 41.82 0.78 -4.23 16 26 C 0.43 3.32 7.75 -152.80 -1.18 2.14 16 27 N -0.83 -4.07 8.64 31.59 0.27 -3.80 16 28 C -0.11 -1.12 9.73 -39.46 -0.38 -1.50 16 29 C -0.04 -0.46 9.58 -39.22 -0.38 -0.84 16 30 H 0.05 1.06 7.87 -51.93 -0.41 0.66 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.92 5.64 -51.93 -0.29 0.63 16 33 H 0.06 1.33 4.43 -51.93 -0.23 1.10 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.27 7.68 8.72 -40.82 -0.36 7.32 16 36 H 0.39 6.14 6.55 -40.82 -0.27 5.88 16 37 H 0.14 1.22 6.39 -52.49 -0.34 0.89 16 38 H 0.13 0.80 6.27 -52.48 -0.33 0.47 16 39 H 0.20 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.41 1.61 6.18 -40.82 -0.25 1.36 16 41 H 0.42 1.48 8.68 -40.82 -0.35 1.12 16 42 H 0.14 1.27 8.05 -52.48 -0.42 0.85 16 43 H 0.15 1.70 7.64 -52.49 -0.40 1.30 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -32.66 362.85 -6.84 -39.50 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.51 Total: 6.93 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -5.43 Total: -9.53 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 1.87 Total: -51.69 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -4.32 Total: 20.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.66 -6.84 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183826425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.006 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds