Wall clock time and date at job start Sat Apr 11 2020 05:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00329 * 64.73174 * 5 3 2 8 8 N 1.31514 * 120.00396 * 187.25917 * 7 5 3 9 9 Si 1.86806 * 119.99749 * 7.26776 * 7 5 3 10 10 H 1.48507 * 109.46731 * 269.99746 * 9 7 5 11 11 H 1.48501 * 109.47091 * 29.99201 * 9 7 5 12 12 H 1.48493 * 109.47250 * 149.99769 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21581 * 120.00118 * 359.97438 * 14 13 3 16 16 C 1.47641 * 119.99730 * 179.97438 * 14 13 3 17 17 C 1.39731 * 120.07734 * 359.72531 * 16 14 13 18 18 C 1.37704 * 119.91866 * 179.69370 * 17 16 14 19 19 C 1.39080 * 120.07970 * 0.58062 * 18 17 16 20 20 N 1.39731 * 119.92559 * 179.69556 * 19 18 17 21 21 N 1.39909 * 125.83936 * 144.71376 * 20 19 18 22 22 C 1.30354 * 109.25498 * 179.80943 * 21 20 19 23 23 C 1.41453 * 108.38419 * 0.44546 * 22 21 20 24 24 C 1.43196 * 126.47375 * 179.74958 * 23 22 21 25 25 N 8.65496 * 143.25769 * 256.87180 * 16 1 2 26 26 C 1.35870 * 125.83761 * 325.02005 * 20 19 18 27 27 N 1.38108 * 126.50433 * 359.96711 * 26 20 19 28 28 C 1.39088 * 120.15198 * 359.71962 * 19 18 17 29 29 C 1.37695 * 120.07857 * 359.97438 * 28 19 18 30 30 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 31 31 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 33 33 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 34 34 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 35 35 H 0.96997 * 119.99418 * 354.94858 * 8 7 5 36 36 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 37 37 H 1.07997 * 120.03645 * 0.02562 * 17 16 14 38 38 H 1.08004 * 119.95885 * 180.30043 * 18 17 16 39 39 H 1.07999 * 125.80952 * 180.16448 * 22 21 20 40 40 H 0.97003 * 120.00343 * 359.97438 * 27 26 20 41 41 H 0.97003 * 119.99522 * 179.97438 * 27 26 20 42 42 H 1.08004 * 119.95827 * 180.02562 * 28 19 18 43 43 H 1.08000 * 120.03952 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9700 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3382 2.6316 0.4504 16 6 0.0620 3.3178 2.6463 17 6 0.9580 3.3477 3.7182 18 6 0.6004 3.9666 4.8952 19 6 -0.6554 4.5508 5.0220 20 7 -1.0172 5.1724 6.2201 21 7 -1.8143 6.3158 6.3415 22 6 -1.9493 6.6136 7.6034 23 6 -1.2255 5.6666 8.3652 24 6 -1.1074 5.6331 9.7919 25 7 -1.0125 5.6086 10.9232 26 6 -0.6504 4.7731 7.4659 27 7 0.1419 3.6865 7.7803 28 6 -1.5520 4.5174 3.9593 29 6 -1.1988 3.9058 2.7773 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.9924 1.1426 -0.6139 36 1 2.2853 2.1184 1.9978 37 1 1.9317 2.8908 3.6217 38 1 1.2942 3.9943 5.7224 39 1 -2.5136 7.4448 7.9996 40 1 0.4945 3.1227 7.0741 41 1 0.3459 3.4872 8.7075 42 1 -2.5262 4.9725 4.0611 43 1 -1.8954 3.8806 1.9524 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183826425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:54 Heat of formation + Delta-G solvation = 78.955935 kcal Electronic energy + Delta-G solvation = -27757.003068 eV Core-core repulsion = 23803.118739 eV Total energy + Delta-G solvation = -3953.884329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.78299 -41.25329 -39.56905 -37.44843 -37.08803 -36.18043 -34.75392 -34.38655 -33.23646 -32.12633 -30.58085 -30.06716 -29.01667 -25.65092 -24.46452 -24.19555 -23.08167 -22.66191 -21.92039 -21.21547 -20.06374 -19.98497 -18.75214 -18.54900 -17.53477 -17.24863 -16.82955 -16.75168 -16.36203 -15.98417 -15.65974 -15.49596 -14.99403 -14.78043 -14.64319 -14.56491 -14.46855 -14.32945 -14.15942 -14.08922 -13.78278 -13.68837 -13.46046 -13.40732 -12.72621 -12.53679 -12.47602 -12.32641 -12.27815 -11.83926 -11.70605 -11.49686 -11.13633 -10.99619 -10.84618 -10.65004 -10.24770 -9.86838 -9.42595 -9.06158 -8.76919 -6.45771 -0.59034 0.15367 0.65405 0.89748 1.18258 1.42405 1.52089 1.68797 1.70944 1.83176 2.37465 2.41353 2.43210 2.60569 2.71654 3.04297 3.12524 3.53649 3.65238 3.74228 3.80197 3.91886 4.09789 4.30072 4.32989 4.39184 4.41087 4.44161 4.52981 4.79529 4.82224 4.92325 4.98510 5.09015 5.17458 5.22516 5.28239 5.31682 5.41436 5.54979 5.60193 5.64092 5.67239 6.01313 6.06787 6.24700 6.52510 6.64558 6.69353 6.80683 7.27590 7.39597 8.62735 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.002216 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.186957 B =12630.323683 C =13178.040173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.245 3.755 4 H 0.026 0.974 5 C -0.602 4.602 6 H 0.044 0.956 7 C -0.010 4.010 8 N -0.935 5.935 9 Si 1.077 2.923 10 H -0.257 1.257 11 H -0.265 1.265 12 H -0.289 1.289 13 N -0.694 5.694 14 C 0.543 3.457 15 O -0.576 6.576 16 C -0.142 4.142 17 C -0.052 4.052 18 C -0.141 4.141 19 C 0.171 3.829 20 N -0.352 5.352 21 N -0.314 5.314 22 C 0.150 3.850 23 C -0.272 4.272 24 C 0.322 3.678 25 N -0.487 5.487 26 C 0.440 3.560 27 N -0.818 5.818 28 C -0.112 4.112 29 C -0.041 4.041 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.258 0.742 36 H 0.403 0.597 37 H 0.154 0.846 38 H 0.161 0.839 39 H 0.231 0.769 40 H 0.419 0.581 41 H 0.430 0.570 42 H 0.151 0.849 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.880 6.529 18.380 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.173 4.173 3 C 0.141 3.859 4 H 0.044 0.956 5 C -0.641 4.641 6 H 0.062 0.938 7 C -0.209 4.209 8 N -0.571 5.571 9 Si 0.900 3.100 10 H -0.183 1.183 11 H -0.190 1.190 12 H -0.216 1.216 13 N -0.343 5.343 14 C 0.331 3.669 15 O -0.457 6.457 16 C -0.145 4.145 17 C -0.072 4.072 18 C -0.162 4.162 19 C 0.079 3.921 20 N -0.133 5.133 21 N -0.129 5.129 22 C -0.042 4.042 23 C -0.293 4.293 24 C 0.009 3.991 25 N -0.166 5.166 26 C 0.205 3.795 27 N -0.368 5.368 28 C -0.132 4.132 29 C -0.060 4.060 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.239 0.761 37 H 0.172 0.828 38 H 0.179 0.821 39 H 0.248 0.752 40 H 0.253 0.747 41 H 0.265 0.735 42 H 0.169 0.831 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.482 6.119 16.666 22.911 hybrid contribution 1.230 0.215 2.110 2.452 sum -13.253 6.334 18.776 23.839 Atomic orbital electron populations 1.21787 0.95328 1.00588 1.01600 1.22156 0.95576 0.98203 1.01393 1.18953 0.93596 0.89860 0.83526 0.95592 1.22343 0.91437 1.46468 1.03823 0.93757 1.26774 0.97675 0.93751 1.02748 1.70937 1.05377 1.44731 1.36055 0.83582 0.74459 0.78528 0.73399 1.18279 1.18969 1.21589 1.45999 1.15278 1.55752 1.17287 1.18612 0.81922 0.78448 0.87913 1.90738 1.51886 1.61149 1.41957 1.20097 0.96980 1.03406 0.94059 1.21340 0.99280 0.95779 0.90775 1.21029 0.93996 1.01401 0.99756 1.17689 0.94064 0.95941 0.84423 1.45431 1.42497 1.23367 1.01981 1.77436 1.15557 0.99936 1.19982 1.24432 0.94208 0.97443 0.88112 1.15134 1.22043 1.07338 0.84834 1.24307 0.91576 0.92306 0.90891 1.81324 1.12494 1.10187 1.12622 1.18258 0.88773 0.87782 0.84724 1.41994 1.53550 1.27485 1.13726 1.20960 1.00289 1.00362 0.91590 1.21207 0.94777 0.92731 0.97312 0.94136 0.92277 0.93026 0.93076 0.91870 0.93241 0.76079 0.82822 0.82125 0.75238 0.74661 0.73529 0.83136 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 8.52 71.98 0.61 -4.27 16 2 C -0.13 -5.45 5.20 30.59 0.16 -5.29 16 3 C 0.25 10.93 1.81 44.24 0.08 11.01 16 4 H 0.03 1.31 6.07 -2.39 -0.01 1.29 16 5 C -0.60 -31.18 9.09 25.60 0.23 -30.95 16 6 H 0.04 2.40 7.95 -2.91 -0.02 2.37 16 7 C -0.01 -0.52 5.42 84.65 0.46 -0.06 16 8 N -0.94 -55.22 13.70 21.45 0.29 -54.93 16 9 Si 1.08 49.44 25.39 68.60 1.74 51.18 16 10 H -0.26 -10.84 6.73 99.48 0.67 -10.17 16 11 H -0.26 -11.72 6.38 99.48 0.63 -11.09 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 13 N -0.69 -24.97 4.98 -449.16 -2.23 -27.21 16 14 C 0.54 18.45 6.35 86.73 0.55 19.00 16 15 O -0.58 -23.35 13.48 -3.97 -0.05 -23.40 16 16 C -0.14 -3.49 5.88 -20.07 -0.12 -3.61 16 17 C -0.05 -0.93 9.53 22.50 0.21 -0.72 16 18 C -0.14 -1.94 8.39 22.35 0.19 -1.75 16 19 C 0.17 2.80 6.38 38.29 0.24 3.05 16 20 N -0.35 -5.45 3.73 -183.51 -0.68 -6.13 16 21 N -0.31 -5.11 12.21 -56.21 -0.69 -5.80 16 22 C 0.15 1.73 11.98 85.70 1.03 2.76 16 23 C -0.27 -3.56 6.01 -21.01 -0.13 -3.68 16 24 C 0.32 5.18 15.57 88.34 1.38 6.55 16 25 N -0.49 -10.25 18.53 19.00 0.35 -9.90 16 26 C 0.44 5.44 7.75 132.32 1.03 6.46 16 27 N -0.82 -5.39 8.64 -53.97 -0.47 -5.85 16 28 C -0.11 -2.04 9.73 22.35 0.22 -1.82 16 29 C -0.04 -0.90 9.58 22.50 0.22 -0.68 16 30 H 0.04 1.55 7.87 -2.38 -0.02 1.53 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.83 5.64 -2.39 -0.01 1.81 16 33 H 0.05 2.16 4.43 -2.39 -0.01 2.15 16 34 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.26 15.21 8.72 -92.71 -0.81 14.41 16 36 H 0.40 12.34 6.55 -92.71 -0.61 11.73 16 37 H 0.15 2.29 6.39 -2.91 -0.02 2.28 16 38 H 0.16 1.29 6.27 -2.91 -0.02 1.27 16 39 H 0.23 0.90 8.06 -2.91 -0.02 0.88 16 40 H 0.42 1.77 6.18 -92.71 -0.57 1.20 16 41 H 0.43 1.73 8.68 -92.71 -0.81 0.92 16 42 H 0.15 2.46 8.05 -2.91 -0.02 2.43 16 43 H 0.14 3.26 7.64 -2.91 -0.02 3.24 16 Total: -1.00 -71.81 362.85 3.61 -68.19 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -1.01 Total: 17.85 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 6.36 Total: -4.00 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -3.43 Total: -109.82 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.05 Total: -23.40 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 1.74 Total: 51.18 kcal Total: -71.81 3.61 -68.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183826425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.150 kcal (2) G-P(sol) polarization free energy of solvation -71.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds