Wall clock time and date at job start Sat Apr 11 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47027 * 335.89130 * 3 2 1 5 5 C 1.37100 * 119.99846 * 97.50246 * 4 3 2 6 6 H 1.08004 * 119.99697 * 162.52920 * 5 4 3 7 7 C 1.38951 * 120.00403 * 342.53637 * 5 4 3 8 8 N 1.31414 * 119.99453 * 337.57273 * 7 5 4 9 9 Si 1.86795 * 120.00271 * 157.57339 * 7 5 4 10 10 H 1.48504 * 109.47298 * 59.99898 * 9 7 5 11 11 H 1.48500 * 109.47118 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47263 * 300.00133 * 9 7 5 13 13 C 1.34778 * 120.00122 * 277.22745 * 4 3 2 14 14 O 1.21297 * 119.99669 * 0.02562 * 13 4 3 15 15 C 1.50694 * 119.99826 * 179.97438 * 13 4 3 16 16 H 1.09000 * 109.47499 * 300.00240 * 15 13 4 17 17 C 1.53002 * 109.46848 * 180.02562 * 15 13 4 18 18 C 1.50709 * 109.47150 * 175.00039 * 17 15 13 19 19 C 1.38228 * 119.99719 * 269.72636 * 18 17 15 20 20 C 1.38238 * 119.99688 * 179.76356 * 19 18 17 21 21 C 1.38234 * 119.99963 * 0.51128 * 20 19 18 22 22 C 1.38237 * 119.99863 * 359.74455 * 21 20 19 23 23 C 1.38232 * 119.99494 * 90.00159 * 18 17 15 24 24 N 1.46502 * 109.47353 * 60.00374 * 15 13 4 25 25 N 1.29017 * 126.43675 * 59.68712 * 24 15 13 26 26 N 1.28734 * 108.80716 * 179.83560 * 25 24 15 27 27 N 1.28836 * 109.40025 * 0.43721 * 26 25 24 28 28 C 1.31078 * 107.98996 * 359.73638 * 27 26 25 29 29 C 1.50695 * 126.66127 * 179.97438 * 28 27 26 30 30 H 4.40644 * 5.51471 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.46899 * 215.89277 * 3 2 1 32 32 H 1.09003 * 109.47105 * 95.88875 * 3 2 1 33 33 H 0.96998 * 119.99529 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47212 * 295.00179 * 17 15 13 35 35 H 1.08999 * 109.47234 * 54.99920 * 17 15 13 36 36 H 1.08002 * 120.00488 * 0.02562 * 19 18 17 37 37 H 1.08001 * 120.00569 * 180.23190 * 20 19 18 38 38 H 1.08002 * 120.00256 * 179.72202 * 21 20 19 39 39 H 1.08001 * 119.99847 * 179.97438 * 22 21 20 40 40 H 1.07991 * 120.00863 * 359.97438 * 23 18 17 41 41 H 1.09000 * 109.46993 * 270.03266 * 29 28 27 42 42 H 1.08996 * 109.47507 * 30.03841 * 29 28 27 43 43 H 1.08999 * 109.47010 * 150.03901 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2599 0.5642 5 6 3.5100 -2.2833 -0.2674 6 1 4.1230 -3.0885 0.1098 7 6 3.1016 -2.2846 -1.5956 8 7 2.0401 -1.5994 -1.9571 9 14 4.0614 -3.2601 -2.8669 10 1 4.0629 -4.6967 -2.4908 11 1 3.4255 -3.0974 -4.1990 12 1 5.4590 -2.7614 -2.9219 13 6 3.2211 -1.4115 1.9007 14 8 2.8935 -0.5044 2.6363 15 6 3.7235 -2.7084 2.4809 16 1 3.0731 -3.5240 2.1648 17 6 3.7218 -2.6181 4.0083 18 6 4.1065 -3.9538 4.5909 19 6 3.1301 -4.8881 4.8812 20 6 3.4833 -6.1151 5.4110 21 6 4.8120 -6.4036 5.6603 22 6 5.7880 -5.4672 5.3748 23 6 5.4352 -4.2422 4.8401 24 7 5.0870 -2.9595 2.0076 25 7 6.1143 -2.2015 2.1931 26 7 7.1389 -2.7476 1.6370 27 7 6.7848 -3.8545 1.0809 28 6 5.5020 -4.0216 1.2925 29 6 4.6562 -5.1779 0.8252 30 1 -1.0499 -0.0003 0.0003 31 1 3.0089 0.8333 0.6025 32 1 3.0093 0.1063 -1.0223 33 1 1.7553 -1.5999 -2.8844 34 1 4.4388 -1.8621 4.3284 35 1 2.7255 -2.3439 4.3550 36 1 2.0916 -4.6612 4.6902 37 1 2.7208 -6.8467 5.6344 38 1 5.0876 -7.3605 6.0784 39 1 6.8260 -5.6924 5.5700 40 1 6.1977 -3.5107 4.6170 41 1 4.2434 -4.9522 -0.1580 42 1 5.2705 -6.0761 0.7639 43 1 3.8426 -5.3418 1.5319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281584075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:16 Heat of formation + Delta-G solvation = 185.929158 kcal Electronic energy + Delta-G solvation = -30554.571749 eV Core-core repulsion = 26605.326127 eV Total energy + Delta-G solvation = -3949.245622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.70576 -39.63288 -38.88202 -35.87557 -35.27432 -33.18963 -32.73082 -32.19777 -31.57635 -30.92101 -29.46588 -28.07520 -26.88884 -25.37536 -24.47683 -22.86660 -22.62659 -21.77709 -20.89570 -19.53685 -18.40926 -17.44929 -17.13763 -16.71770 -16.31033 -15.87729 -15.11855 -15.01592 -14.80570 -14.65322 -14.43906 -14.02890 -13.59778 -13.45477 -13.43814 -13.05092 -12.99834 -12.67779 -12.50262 -12.21876 -12.14409 -11.94283 -11.81090 -11.66923 -11.37320 -11.20631 -11.04190 -10.98450 -10.91012 -10.61373 -10.59293 -10.46255 -9.61786 -9.55462 -9.41640 -8.97563 -8.95849 -8.90548 -8.58514 -8.22731 -6.72633 -4.28770 1.27520 1.36296 1.82268 2.27348 2.78799 2.90822 3.03416 3.09030 3.45540 3.60554 3.75693 3.88766 4.06579 4.35352 4.44744 4.69108 4.77166 4.82150 4.85911 4.96392 5.01412 5.07285 5.13114 5.41929 5.45107 5.47910 5.61436 5.66991 5.72907 5.79879 5.84219 5.92083 6.02268 6.10454 6.18366 6.31300 6.41232 6.44465 6.47251 6.59895 6.63055 6.74405 6.96135 6.96353 7.01406 7.29706 7.92439 8.67188 8.77045 9.00858 9.18576 9.43199 10.25960 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.005136 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.794894 B = 5450.460969 C = 6407.584660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.107 4.107 3 C 0.240 3.760 4 N -0.412 5.412 5 C -0.372 4.372 6 H 0.105 0.895 7 C 0.052 3.948 8 N -0.831 5.831 9 Si 0.903 3.097 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.266 1.266 13 C 0.443 3.557 14 O -0.582 6.582 15 C 0.156 3.844 16 H 0.127 0.873 17 C -0.075 4.075 18 C -0.087 4.087 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.109 4.109 24 N -0.276 5.276 25 N -0.085 5.085 26 N -0.090 5.090 27 N -0.315 5.315 28 C 0.198 3.802 29 C -0.081 4.081 30 H 0.200 0.800 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.276 0.724 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 -9.049 7.700 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.108 4.108 3 C 0.118 3.882 4 N -0.128 5.128 5 C -0.499 4.499 6 H 0.122 0.878 7 C -0.158 4.158 8 N -0.465 5.465 9 Si 0.728 3.272 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.191 1.191 13 C 0.229 3.771 14 O -0.467 6.467 15 C 0.051 3.949 16 H 0.144 0.856 17 C -0.113 4.113 18 C -0.087 4.087 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.127 4.127 24 N -0.080 5.080 25 N -0.072 5.072 26 N -0.083 5.083 27 N -0.165 5.165 28 C -0.080 4.080 29 C -0.141 4.141 30 H 0.217 0.783 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.751 -7.821 7.946 11.175 hybrid contribution -0.794 -0.952 -1.039 1.618 sum -0.043 -8.774 6.906 11.166 Atomic orbital electron populations 1.24235 0.95328 1.02943 1.05448 1.22985 0.94146 0.97623 0.96094 1.18126 0.84425 0.85706 0.99922 1.43700 1.52771 1.12744 1.03557 1.19953 1.32755 1.04946 0.92229 0.87793 1.25255 0.94524 0.97527 0.98522 1.70111 1.18363 1.38943 1.19073 0.86359 0.80612 0.80315 0.79898 1.18908 1.20286 1.19132 1.19534 0.85964 0.88476 0.83078 1.90614 1.55850 1.41336 1.58903 1.21804 0.76955 1.01002 0.95142 0.85558 1.20757 1.05517 0.94464 0.90557 1.19934 0.93574 0.95908 0.99324 1.21115 0.99268 0.93512 0.99250 1.21119 0.96231 0.96807 0.99559 1.21128 0.93181 0.99242 1.00553 1.21129 0.99408 0.93782 0.99140 1.21134 0.95729 0.97172 0.98668 1.48417 1.10166 1.14073 1.35300 1.78781 0.90650 1.17896 1.19836 1.78479 1.18620 1.02158 1.09067 1.74888 1.08505 1.12669 1.20480 1.25699 0.92629 0.93371 0.96256 1.20545 0.97820 0.92390 1.03304 0.78281 0.91116 0.87448 0.91273 0.88675 0.87490 0.85673 0.86046 0.86276 0.86270 0.86483 0.87942 0.88605 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.45 19.25 29.55 0.57 -4.88 16 2 C -0.11 -2.46 11.69 -37.12 -0.43 -2.90 16 3 C 0.24 5.55 5.04 -6.83 -0.03 5.51 16 4 N -0.41 -9.58 2.61 -117.93 -0.31 -9.89 16 5 C -0.37 -8.51 8.88 -14.93 -0.13 -8.64 16 6 H 0.10 2.21 1.77 -52.48 -0.09 2.12 16 7 C 0.05 1.18 4.84 -17.47 -0.08 1.10 16 8 N -0.83 -19.72 9.63 55.50 0.53 -19.18 16 9 Si 0.90 18.20 29.14 -169.99 -4.95 13.25 16 10 H -0.26 -4.97 6.94 56.52 0.39 -4.58 16 11 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.44 9.80 7.08 -10.99 -0.08 9.72 16 14 O -0.58 -14.01 15.62 5.54 0.09 -13.92 16 15 C 0.16 2.80 1.91 -69.08 -0.13 2.66 16 16 H 0.13 2.07 6.72 -51.93 -0.35 1.72 16 17 C -0.07 -1.17 4.28 -27.88 -0.12 -1.29 16 18 C -0.09 -1.19 4.95 -104.62 -0.52 -1.71 16 19 C -0.11 -1.33 9.70 -39.59 -0.38 -1.71 16 20 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 21 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 22 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 23 C -0.11 -1.52 9.31 -39.58 -0.37 -1.89 16 24 N -0.28 -5.14 1.65 -52.93 -0.09 -5.23 16 25 N -0.09 -1.76 13.00 60.35 0.78 -0.97 16 26 N -0.09 -1.88 13.43 60.35 0.81 -1.07 16 27 N -0.31 -6.26 12.36 32.70 0.40 -5.85 16 28 C 0.20 3.53 6.31 -155.43 -0.98 2.55 16 29 C -0.08 -1.14 9.41 36.00 0.34 -0.80 16 30 H 0.20 3.34 7.80 -54.10 -0.42 2.92 16 31 H 0.07 1.59 7.65 -51.93 -0.40 1.20 16 32 H 0.11 2.53 6.36 -51.93 -0.33 2.20 16 33 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 34 H 0.09 1.62 8.06 -51.93 -0.42 1.20 16 35 H 0.11 1.60 7.90 -51.93 -0.41 1.19 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 41 H 0.10 1.56 6.55 -51.93 -0.34 1.22 16 42 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.01 7.17 -51.93 -0.37 0.64 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -28.99 368.10 -5.54 -34.53 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -4.81 Total: 10.21 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -3.55 Total: -7.41 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 2.14 Total: -42.20 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -4.95 Total: 13.25 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.99 -5.54 -34.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281584075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.463 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds