Wall clock time and date at job start Sat Apr 11 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47027 * 335.89130 * 3 2 1 5 5 C 1.37100 * 119.99846 * 97.50246 * 4 3 2 6 6 H 1.08004 * 119.99697 * 162.52920 * 5 4 3 7 7 C 1.38951 * 120.00403 * 342.53637 * 5 4 3 8 8 N 1.31414 * 119.99453 * 337.57273 * 7 5 4 9 9 Si 1.86795 * 120.00271 * 157.57339 * 7 5 4 10 10 H 1.48504 * 109.47298 * 59.99898 * 9 7 5 11 11 H 1.48500 * 109.47118 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47263 * 300.00133 * 9 7 5 13 13 C 1.34778 * 120.00122 * 277.22745 * 4 3 2 14 14 O 1.21297 * 119.99669 * 0.02562 * 13 4 3 15 15 C 1.50694 * 119.99826 * 179.97438 * 13 4 3 16 16 H 1.09000 * 109.47499 * 300.00240 * 15 13 4 17 17 C 1.53002 * 109.46848 * 180.02562 * 15 13 4 18 18 C 1.50709 * 109.47150 * 175.00039 * 17 15 13 19 19 C 1.38228 * 119.99719 * 269.72636 * 18 17 15 20 20 C 1.38238 * 119.99688 * 179.76356 * 19 18 17 21 21 C 1.38234 * 119.99963 * 0.51128 * 20 19 18 22 22 C 1.38237 * 119.99863 * 359.74455 * 21 20 19 23 23 C 1.38232 * 119.99494 * 90.00159 * 18 17 15 24 24 N 1.46502 * 109.47353 * 60.00374 * 15 13 4 25 25 N 1.29017 * 126.43675 * 59.68712 * 24 15 13 26 26 N 1.28734 * 108.80716 * 179.83560 * 25 24 15 27 27 N 1.28836 * 109.40025 * 0.43721 * 26 25 24 28 28 C 1.31078 * 107.98996 * 359.73638 * 27 26 25 29 29 C 1.50695 * 126.66127 * 179.97438 * 28 27 26 30 30 H 4.40644 * 5.51471 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.46899 * 215.89277 * 3 2 1 32 32 H 1.09003 * 109.47105 * 95.88875 * 3 2 1 33 33 H 0.96998 * 119.99529 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47212 * 295.00179 * 17 15 13 35 35 H 1.08999 * 109.47234 * 54.99920 * 17 15 13 36 36 H 1.08002 * 120.00488 * 0.02562 * 19 18 17 37 37 H 1.08001 * 120.00569 * 180.23190 * 20 19 18 38 38 H 1.08002 * 120.00256 * 179.72202 * 21 20 19 39 39 H 1.08001 * 119.99847 * 179.97438 * 22 21 20 40 40 H 1.07991 * 120.00863 * 359.97438 * 23 18 17 41 41 H 1.09000 * 109.46993 * 270.03266 * 29 28 27 42 42 H 1.08996 * 109.47507 * 30.03841 * 29 28 27 43 43 H 1.08999 * 109.47010 * 150.03901 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2599 0.5642 5 6 3.5100 -2.2833 -0.2674 6 1 4.1230 -3.0885 0.1098 7 6 3.1016 -2.2846 -1.5956 8 7 2.0401 -1.5994 -1.9571 9 14 4.0614 -3.2601 -2.8669 10 1 4.0629 -4.6967 -2.4908 11 1 3.4255 -3.0974 -4.1990 12 1 5.4590 -2.7614 -2.9219 13 6 3.2211 -1.4115 1.9007 14 8 2.8935 -0.5044 2.6363 15 6 3.7235 -2.7084 2.4809 16 1 3.0731 -3.5240 2.1648 17 6 3.7218 -2.6181 4.0083 18 6 4.1065 -3.9538 4.5909 19 6 3.1301 -4.8881 4.8812 20 6 3.4833 -6.1151 5.4110 21 6 4.8120 -6.4036 5.6603 22 6 5.7880 -5.4672 5.3748 23 6 5.4352 -4.2422 4.8401 24 7 5.0870 -2.9595 2.0076 25 7 6.1143 -2.2015 2.1931 26 7 7.1389 -2.7476 1.6370 27 7 6.7848 -3.8545 1.0809 28 6 5.5020 -4.0216 1.2925 29 6 4.6562 -5.1779 0.8252 30 1 -1.0499 -0.0003 0.0003 31 1 3.0089 0.8333 0.6025 32 1 3.0093 0.1063 -1.0223 33 1 1.7553 -1.5999 -2.8844 34 1 4.4388 -1.8621 4.3284 35 1 2.7255 -2.3439 4.3550 36 1 2.0916 -4.6612 4.6902 37 1 2.7208 -6.8467 5.6344 38 1 5.0876 -7.3605 6.0784 39 1 6.8260 -5.6924 5.5700 40 1 6.1977 -3.5107 4.6170 41 1 4.2434 -4.9522 -0.1580 42 1 5.2705 -6.0761 0.7639 43 1 3.8426 -5.3418 1.5319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281584075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:15 Heat of formation + Delta-G solvation = 171.113361 kcal Electronic energy + Delta-G solvation = -30555.214210 eV Core-core repulsion = 26605.326127 eV Total energy + Delta-G solvation = -3949.888083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.21235 -41.08322 -40.09093 -37.45489 -36.91611 -34.61225 -33.96946 -33.89236 -33.31042 -31.80944 -30.74135 -29.42181 -28.50002 -26.97548 -25.98219 -24.31728 -23.55558 -23.15708 -22.03522 -21.17634 -20.07114 -19.00634 -18.70466 -17.90532 -17.69138 -17.40277 -16.53624 -16.42743 -16.05739 -15.95695 -15.82627 -15.61100 -14.99240 -14.93775 -14.39655 -14.29741 -14.27517 -14.04293 -13.87965 -13.71867 -13.55922 -13.47970 -13.16177 -12.99620 -12.85509 -12.78333 -12.49901 -12.20238 -12.15288 -12.11603 -11.92127 -11.86881 -11.34515 -11.29386 -10.93108 -10.70209 -10.47990 -10.01049 -9.85157 -9.68207 -8.46924 -6.07990 0.30356 0.38642 0.46804 0.77584 1.26058 1.31646 1.42456 1.46993 1.79169 1.97365 2.20477 2.33777 2.68640 2.88814 2.96263 3.15244 3.35899 3.59043 3.67163 3.77306 3.85085 3.94864 4.07864 4.13505 4.27567 4.36029 4.40181 4.53520 4.59844 4.61506 4.65856 4.73355 4.75938 4.78989 4.88012 4.93968 5.08812 5.13633 5.26873 5.31337 5.33635 5.54428 5.55405 5.60398 5.66736 6.08609 6.15855 6.90617 7.06812 7.26075 7.65163 7.68364 8.51988 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.005136 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.794894 B = 5450.460969 C = 6407.584660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.156 4.156 3 C 0.242 3.758 4 N -0.423 5.423 5 C -0.386 4.386 6 H 0.119 0.881 7 C 0.022 3.978 8 N -0.851 5.851 9 Si 0.948 3.052 10 H -0.235 1.235 11 H -0.277 1.277 12 H -0.288 1.288 13 C 0.434 3.566 14 O -0.610 6.610 15 C 0.164 3.836 16 H 0.148 0.852 17 C -0.064 4.064 18 C -0.099 4.099 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.127 4.127 24 N -0.274 5.274 25 N -0.106 5.106 26 N -0.107 5.107 27 N -0.331 5.331 28 C 0.204 3.796 29 C -0.085 4.085 30 H 0.239 0.761 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.276 0.724 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.142 0.858 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.128 0.872 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 -12.451 8.222 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.157 4.157 3 C 0.119 3.881 4 N -0.139 5.139 5 C -0.513 4.513 6 H 0.136 0.864 7 C -0.186 4.186 8 N -0.486 5.486 9 Si 0.771 3.229 10 H -0.158 1.158 11 H -0.202 1.202 12 H -0.214 1.214 13 C 0.221 3.779 14 O -0.496 6.496 15 C 0.059 3.941 16 H 0.165 0.835 17 C -0.102 4.102 18 C -0.100 4.100 19 C -0.132 4.132 20 C -0.130 4.130 21 C -0.134 4.134 22 C -0.143 4.143 23 C -0.146 4.146 24 N -0.077 5.077 25 N -0.093 5.093 26 N -0.100 5.100 27 N -0.182 5.182 28 C -0.073 4.073 29 C -0.144 4.144 30 H 0.256 0.744 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.159 0.841 37 H 0.172 0.828 38 H 0.167 0.833 39 H 0.146 0.854 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.142 0.858 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.700 -11.243 8.471 14.094 hybrid contribution -0.378 0.131 -1.156 1.223 sum -1.078 -11.112 7.315 13.347 Atomic orbital electron populations 1.25162 0.96263 1.00825 1.03224 1.23197 0.94705 0.99653 0.98154 1.17958 0.85295 0.85879 0.98936 1.43912 1.52923 1.12817 1.04203 1.20334 1.33052 1.05276 0.92614 0.86403 1.25849 0.94869 0.98294 0.99571 1.70191 1.19296 1.39901 1.19164 0.85662 0.78031 0.80981 0.78202 1.15829 1.20187 1.21421 1.20194 0.85428 0.89629 0.82625 1.90580 1.56876 1.42732 1.59447 1.21803 0.76722 0.99209 0.96318 0.83499 1.20624 1.05049 0.95538 0.89013 1.19731 0.94004 0.95329 1.00890 1.21332 0.99517 0.93549 0.98794 1.21498 0.96958 0.96622 0.97929 1.21492 0.92887 0.99803 0.99172 1.21306 1.00580 0.93368 0.99068 1.21021 0.95380 0.97753 1.00405 1.48384 1.09887 1.14139 1.35283 1.78752 0.91238 1.18805 1.20503 1.78444 1.19115 1.02840 1.09648 1.74833 1.09732 1.12554 1.21075 1.26419 0.92438 0.93681 0.94779 1.20829 0.98482 0.91768 1.03332 0.74419 0.92031 0.88774 0.91373 0.91116 0.87032 0.84052 0.82841 0.83340 0.85393 0.89209 0.88460 0.85753 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.59 19.25 74.32 1.43 -8.16 16 2 C -0.16 -7.22 11.69 31.13 0.36 -6.86 16 3 C 0.24 11.58 5.04 84.57 0.43 12.01 16 4 N -0.42 -20.05 2.61 -645.40 -1.68 -21.73 16 5 C -0.39 -17.64 8.88 84.04 0.75 -16.89 16 6 H 0.12 4.91 1.77 -2.91 -0.01 4.90 16 7 C 0.02 1.00 4.84 84.93 0.41 1.41 16 8 N -0.85 -40.41 9.63 21.66 0.21 -40.20 16 9 Si 0.95 36.48 29.14 68.60 2.00 38.48 16 10 H -0.24 -7.91 6.94 99.48 0.69 -7.22 16 11 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 12 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 13 C 0.43 19.54 7.08 87.65 0.62 20.16 16 14 O -0.61 -30.29 15.62 -3.08 -0.05 -30.34 16 15 C 0.16 5.84 1.91 44.24 0.08 5.93 16 16 H 0.15 4.57 6.72 -2.39 -0.02 4.56 16 17 C -0.06 -2.01 4.28 29.85 0.13 -1.88 16 18 C -0.10 -2.61 4.95 -19.87 -0.10 -2.71 16 19 C -0.11 -2.32 9.70 22.27 0.22 -2.11 16 20 C -0.11 -1.85 10.05 22.27 0.22 -1.62 16 21 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 22 C -0.13 -2.79 10.05 22.27 0.22 -2.56 16 23 C -0.13 -3.51 9.31 22.27 0.21 -3.31 16 24 N -0.27 -10.19 1.65 -321.37 -0.53 -10.73 16 25 N -0.11 -4.51 13.00 37.02 0.48 -4.03 16 26 N -0.11 -4.58 13.43 37.01 0.50 -4.08 16 27 N -0.33 -13.05 12.36 -50.45 -0.62 -13.67 16 28 C 0.20 7.05 6.31 138.13 0.87 7.93 16 29 C -0.08 -2.13 9.41 71.23 0.67 -1.46 16 30 H 0.24 7.26 7.80 -4.42 -0.03 7.22 16 31 H 0.06 2.95 7.65 -2.39 -0.02 2.93 16 32 H 0.09 4.65 6.36 -2.39 -0.02 4.64 16 33 H 0.28 12.57 8.31 -92.71 -0.77 11.80 16 34 H 0.07 2.55 8.06 -2.39 -0.02 2.53 16 35 H 0.11 3.34 7.90 -2.39 -0.02 3.32 16 36 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 40 H 0.09 2.92 8.06 -2.92 -0.02 2.90 16 41 H 0.10 2.64 6.55 -2.39 -0.02 2.63 16 42 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.11 2.19 7.17 -2.39 -0.02 2.17 16 Total: -1.00 -64.61 368.10 8.09 -56.52 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 1.04 Total: 31.67 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 6.75 Total: -1.90 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -1.65 Total: -94.44 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.05 Total: -30.34 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.00 Total: 38.48 kcal Total: -64.61 8.09 -56.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281584075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.637 kcal (2) G-P(sol) polarization free energy of solvation -64.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds