Wall clock time and date at job start Sat Apr 11 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47372 * 2 1 4 4 N 1.46508 * 109.46845 * 119.99500 * 2 1 3 5 5 C 1.36754 * 127.14314 * 300.18179 * 4 2 1 6 6 N 1.30305 * 107.31534 * 180.25850 * 5 4 2 7 7 N 1.28528 * 110.07694 * 359.73850 * 6 5 4 8 8 C 1.31285 * 109.85835 * 359.97438 * 7 6 5 9 9 S 1.76200 * 126.48474 * 180.02562 * 8 7 6 10 10 C 1.80999 * 99.99787 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47025 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00143 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99763 * 179.97438 * 11 10 9 14 14 C 1.46965 * 120.59323 * 179.97438 * 13 11 10 15 15 C 1.53374 * 108.63702 * 235.25034 * 14 13 11 16 16 N 1.46968 * 108.63080 * 310.57409 * 15 14 13 17 17 C 1.36934 * 120.58904 * 235.19759 * 16 15 14 18 18 H 1.08009 * 119.99376 * 151.84519 * 17 16 15 19 19 C 1.38804 * 120.00824 * 331.57781 * 17 16 15 20 20 N 1.31627 * 119.99593 * 342.82852 * 19 17 16 21 21 Si 1.86794 * 120.00637 * 162.82757 * 19 17 16 22 22 H 1.48504 * 109.47167 * 59.99793 * 21 19 17 23 23 H 1.48497 * 109.47420 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47203 * 300.00107 * 21 19 17 25 25 C 1.46960 * 118.80978 * 55.48071 * 16 15 14 26 26 C 1.46963 * 120.59877 * 0.02562 * 13 11 10 27 27 H 1.08998 * 109.47267 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47380 * 300.00391 * 1 2 3 29 29 H 1.09004 * 109.46497 * 60.00264 * 1 2 3 30 30 H 1.08995 * 109.47380 * 239.99609 * 2 1 3 31 31 H 1.08995 * 109.47700 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46619 * 299.99595 * 3 2 1 33 33 H 1.09005 * 109.47184 * 59.99424 * 3 2 1 34 34 H 1.08001 * 126.34412 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.47510 * 59.99946 * 10 9 8 36 36 H 1.09007 * 109.47112 * 299.99955 * 10 9 8 37 37 H 1.08996 * 109.61476 * 115.50253 * 14 13 11 38 38 H 1.09010 * 109.75120 * 355.07348 * 14 13 11 39 39 H 1.09003 * 109.60871 * 190.82753 * 15 14 13 40 40 H 1.08999 * 109.74926 * 70.40483 * 15 14 13 41 41 H 0.97003 * 120.00012 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.61464 * 64.26783 * 25 16 15 43 43 H 1.09004 * 109.60410 * 184.77119 * 25 16 15 44 44 H 1.08997 * 109.60925 * 244.49552 * 26 13 11 45 45 H 1.09004 * 109.60691 * 4.83230 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.7768 -0.3549 2.4999 6 7 2.3994 -1.2233 3.2456 7 7 3.0089 -2.0817 2.5083 8 6 2.8058 -1.8051 1.2411 9 16 3.4365 -2.6985 -0.1405 10 6 4.3634 -3.9937 0.7195 11 6 5.0093 -4.9051 -0.2921 12 8 4.8576 -4.6994 -1.4777 13 7 5.7556 -5.9486 0.1208 14 6 6.3911 -6.8460 -0.8543 15 6 5.9520 -8.2847 -0.5552 16 7 6.1446 -8.5460 0.8782 17 6 6.9020 -9.6069 1.2976 18 1 7.4161 -9.5617 2.2464 19 6 7.0047 -10.7424 0.5060 20 7 6.1352 -10.9524 -0.4596 21 14 8.3769 -11.9726 0.8109 22 1 8.2648 -12.5070 2.1919 23 1 8.2659 -13.0892 -0.1618 24 1 9.6905 -11.3001 0.6456 25 6 5.5045 -7.6519 1.8533 26 6 5.9477 -6.2103 1.5541 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.1840 0.4784 2.8469 35 1 3.6843 -4.5706 1.3474 36 1 5.1338 -3.5374 1.3411 37 1 7.4751 -6.7693 -0.7700 38 1 6.0824 -6.5716 -1.8632 39 1 6.5558 -8.9802 -1.1382 40 1 4.9000 -8.4097 -0.8118 41 1 6.2067 -11.7461 -1.0126 42 1 4.4209 -7.7299 1.7650 43 1 5.8127 -7.9295 2.8613 44 1 7.0001 -6.0882 1.8104 45 1 5.3459 -5.5130 2.1371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330815827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:36 Heat of formation + Delta-G solvation = 77.635423 kcal Electronic energy + Delta-G solvation = -26924.528717 eV Core-core repulsion = 23106.031078 eV Total energy + Delta-G solvation = -3818.497639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.09915 -39.69902 -37.06095 -36.87429 -34.00099 -31.88020 -31.43405 -31.16881 -30.75130 -29.22155 -27.95460 -26.77380 -24.30282 -23.68192 -22.88842 -22.78377 -21.41775 -20.64631 -18.84720 -18.15730 -17.27339 -16.50773 -16.41711 -16.21798 -15.74210 -15.49761 -15.28156 -14.83306 -14.81487 -13.96283 -13.90804 -13.69969 -13.59484 -13.36484 -13.28434 -13.17229 -13.07503 -12.95652 -12.21327 -12.13980 -12.02504 -11.79566 -11.57632 -11.27593 -11.08759 -10.83048 -10.77878 -10.61231 -10.59335 -10.43942 -10.28157 -10.23967 -10.00839 -9.91963 -9.59817 -8.62540 -8.35522 -7.82835 -6.74568 -5.86759 -3.32269 0.79963 1.40872 1.79838 2.26229 2.61859 2.74345 3.32962 3.34808 3.41149 3.42252 3.90599 4.23238 4.24403 4.40261 4.42058 4.53203 4.86772 4.87955 4.89006 4.95571 5.05366 5.13226 5.18534 5.29344 5.30911 5.32868 5.49787 5.50538 5.69073 5.71893 5.75573 5.86767 6.05748 6.26351 6.33327 6.43951 6.45672 6.65767 6.79234 7.19629 7.50082 7.69735 7.73833 8.31264 8.34287 8.40608 9.09940 9.72476 10.29012 11.20857 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028906 B = 0.002249 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.412272 B =12447.776150 C =12961.537725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 C -0.162 4.162 4 N -0.460 5.460 5 C 0.157 3.843 6 N -0.288 5.288 7 N -0.296 5.296 8 C 0.146 3.854 9 S 0.071 5.929 10 C -0.138 4.138 11 C 0.527 3.473 12 O -0.544 6.544 13 N -0.586 5.586 14 C 0.088 3.912 15 C 0.158 3.842 16 N -0.591 5.591 17 C -0.259 4.259 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.906 3.094 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.131 3.869 26 C 0.084 3.916 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.217 0.783 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.025 0.975 41 H 0.256 0.744 42 H 0.025 0.975 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 24.642 0.471 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.024 3.976 3 C -0.220 4.220 4 N -0.155 5.155 5 C -0.133 4.133 6 N -0.126 5.126 7 N -0.141 5.141 8 C -0.229 4.229 9 S 0.298 5.702 10 C -0.289 4.289 11 C 0.312 3.688 12 O -0.424 6.424 13 N -0.317 5.317 14 C -0.035 4.035 15 C 0.031 3.969 16 N -0.314 5.314 17 C -0.388 4.388 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.735 3.265 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.003 3.997 26 C -0.041 4.041 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.312 24.044 -0.178 25.785 hybrid contribution 0.236 -0.185 0.582 0.655 sum -9.076 23.859 0.404 25.531 Atomic orbital electron populations 1.22191 0.92416 1.03769 1.03714 1.21627 0.96036 0.94263 0.85702 1.22186 1.02561 0.93567 1.03718 1.46840 1.38485 1.21776 1.08376 1.26528 1.04159 1.03053 0.79569 1.73940 1.09648 1.02432 1.26610 1.74709 1.20860 1.21044 0.97451 1.27391 1.00693 0.93587 1.01206 1.86050 1.59607 1.27277 0.97249 1.23763 1.04006 0.98862 1.02316 1.19482 0.79494 0.81391 0.88428 1.90693 1.62084 1.72602 1.17011 1.47972 1.48649 1.26606 1.08516 1.22589 0.96736 0.92319 0.91874 1.21207 0.99245 0.90317 0.86098 1.44015 1.57180 1.29960 1.00213 1.19149 1.21556 0.92436 1.05659 0.91440 1.25096 0.98227 0.96748 0.99426 1.70012 1.34137 1.27799 1.22533 0.86327 0.82106 0.80528 0.77540 1.20803 1.21595 1.20910 1.21358 0.95596 0.88149 0.94578 1.22581 1.01713 1.00019 0.79756 0.91305 0.91454 0.89824 0.87367 0.91376 0.89821 0.91464 0.76634 0.85658 0.85872 0.91826 0.89922 0.88095 0.95735 0.93356 0.95708 0.91221 0.91076 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 9.26 37.16 0.34 -0.36 16 2 C 0.13 0.76 3.60 -67.93 -0.24 0.52 16 3 C -0.16 -0.67 9.26 37.16 0.34 -0.32 16 4 N -0.46 -4.33 2.66 -111.05 -0.29 -4.63 16 5 C 0.16 1.48 11.91 -88.95 -1.06 0.42 16 6 N -0.29 -3.93 12.18 29.90 0.36 -3.56 16 7 N -0.30 -4.34 11.60 30.68 0.36 -3.99 16 8 C 0.15 1.83 8.07 -88.34 -0.71 1.11 16 9 S 0.07 0.90 20.59 -107.50 -2.21 -1.31 16 10 C -0.14 -1.86 4.06 36.01 0.15 -1.72 16 11 C 0.53 8.88 7.72 -10.98 -0.08 8.80 16 12 O -0.54 -10.59 15.27 5.56 0.08 -10.51 16 13 N -0.59 -10.33 2.95 -172.24 -0.51 -10.84 16 14 C 0.09 1.72 6.59 -3.60 -0.02 1.70 16 15 C 0.16 3.69 5.51 -3.59 -0.02 3.67 16 16 N -0.59 -14.21 2.96 -171.80 -0.51 -14.72 16 17 C -0.26 -6.81 9.57 -15.06 -0.14 -6.96 16 18 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 19 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 20 N -0.90 -25.55 11.20 55.49 0.62 -24.93 16 21 Si 0.91 21.13 29.59 -169.99 -5.03 16.10 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.13 2.56 6.70 -3.40 -0.02 2.54 16 26 C 0.08 1.35 6.52 -3.39 -0.02 1.33 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.23 7.98 -51.93 -0.41 -0.18 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.11 0.70 7.33 -51.93 -0.38 0.32 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.22 7.99 -51.93 -0.41 -0.19 16 34 H 0.22 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.65 7.72 -51.92 -0.40 1.25 16 36 H 0.12 1.52 7.91 -51.91 -0.41 1.11 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.61 7.00 -51.92 -0.36 1.24 16 39 H 0.10 2.61 6.00 -51.93 -0.31 2.29 16 40 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 1.30 7.93 -51.93 -0.41 0.88 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.08 0.99 5.91 -51.93 -0.31 0.68 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -33.53 379.16 -9.77 -43.30 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.77 Total: -1.37 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -1.59 Total: 10.74 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: 0.03 Total: -62.67 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.21 Total: -1.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.53 -9.77 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330815827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.938 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds