Wall clock time and date at job start Sat Apr 11 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47372 * 2 1 4 4 N 1.46508 * 109.46845 * 119.99500 * 2 1 3 5 5 C 1.36754 * 127.14314 * 300.18179 * 4 2 1 6 6 N 1.30305 * 107.31534 * 180.25850 * 5 4 2 7 7 N 1.28528 * 110.07694 * 359.73850 * 6 5 4 8 8 C 1.31285 * 109.85835 * 359.97438 * 7 6 5 9 9 S 1.76200 * 126.48474 * 180.02562 * 8 7 6 10 10 C 1.80999 * 99.99787 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47025 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00143 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99763 * 179.97438 * 11 10 9 14 14 C 1.46965 * 120.59323 * 179.97438 * 13 11 10 15 15 C 1.53374 * 108.63702 * 235.25034 * 14 13 11 16 16 N 1.46968 * 108.63080 * 310.57409 * 15 14 13 17 17 C 1.36934 * 120.58904 * 235.19759 * 16 15 14 18 18 H 1.08009 * 119.99376 * 151.84519 * 17 16 15 19 19 C 1.38804 * 120.00824 * 331.57781 * 17 16 15 20 20 N 1.31627 * 119.99593 * 342.82852 * 19 17 16 21 21 Si 1.86794 * 120.00637 * 162.82757 * 19 17 16 22 22 H 1.48504 * 109.47167 * 59.99793 * 21 19 17 23 23 H 1.48497 * 109.47420 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47203 * 300.00107 * 21 19 17 25 25 C 1.46960 * 118.80978 * 55.48071 * 16 15 14 26 26 C 1.46963 * 120.59877 * 0.02562 * 13 11 10 27 27 H 1.08998 * 109.47267 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47380 * 300.00391 * 1 2 3 29 29 H 1.09004 * 109.46497 * 60.00264 * 1 2 3 30 30 H 1.08995 * 109.47380 * 239.99609 * 2 1 3 31 31 H 1.08995 * 109.47700 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46619 * 299.99595 * 3 2 1 33 33 H 1.09005 * 109.47184 * 59.99424 * 3 2 1 34 34 H 1.08001 * 126.34412 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.47510 * 59.99946 * 10 9 8 36 36 H 1.09007 * 109.47112 * 299.99955 * 10 9 8 37 37 H 1.08996 * 109.61476 * 115.50253 * 14 13 11 38 38 H 1.09010 * 109.75120 * 355.07348 * 14 13 11 39 39 H 1.09003 * 109.60871 * 190.82753 * 15 14 13 40 40 H 1.08999 * 109.74926 * 70.40483 * 15 14 13 41 41 H 0.97003 * 120.00012 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.61464 * 64.26783 * 25 16 15 43 43 H 1.09004 * 109.60410 * 184.77119 * 25 16 15 44 44 H 1.08997 * 109.60925 * 244.49552 * 26 13 11 45 45 H 1.09004 * 109.60691 * 4.83230 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.7768 -0.3549 2.4999 6 7 2.3994 -1.2233 3.2456 7 7 3.0089 -2.0817 2.5083 8 6 2.8058 -1.8051 1.2411 9 16 3.4365 -2.6985 -0.1405 10 6 4.3634 -3.9937 0.7195 11 6 5.0093 -4.9051 -0.2921 12 8 4.8576 -4.6994 -1.4777 13 7 5.7556 -5.9486 0.1208 14 6 6.3911 -6.8460 -0.8543 15 6 5.9520 -8.2847 -0.5552 16 7 6.1446 -8.5460 0.8782 17 6 6.9020 -9.6069 1.2976 18 1 7.4161 -9.5617 2.2464 19 6 7.0047 -10.7424 0.5060 20 7 6.1352 -10.9524 -0.4596 21 14 8.3769 -11.9726 0.8109 22 1 8.2648 -12.5070 2.1919 23 1 8.2659 -13.0892 -0.1618 24 1 9.6905 -11.3001 0.6456 25 6 5.5045 -7.6519 1.8533 26 6 5.9477 -6.2103 1.5541 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.1840 0.4784 2.8469 35 1 3.6843 -4.5706 1.3474 36 1 5.1338 -3.5374 1.3411 37 1 7.4751 -6.7693 -0.7700 38 1 6.0824 -6.5716 -1.8632 39 1 6.5558 -8.9802 -1.1382 40 1 4.9000 -8.4097 -0.8118 41 1 6.2067 -11.7461 -1.0126 42 1 4.4209 -7.7299 1.7650 43 1 5.8127 -7.9295 2.8613 44 1 7.0001 -6.0882 1.8104 45 1 5.3459 -5.5130 2.1371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330815827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:35 Heat of formation + Delta-G solvation = 58.630287 kcal Electronic energy + Delta-G solvation = -26925.352841 eV Core-core repulsion = 23106.031078 eV Total energy + Delta-G solvation = -3819.321763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.92276 -41.14144 -38.51472 -37.62560 -35.72342 -33.16583 -32.67323 -32.51333 -31.77705 -30.59331 -28.51189 -28.25750 -25.51404 -24.96456 -24.41666 -23.70205 -22.47795 -21.87471 -20.30242 -19.13743 -18.69569 -17.92187 -17.38303 -17.25041 -16.80887 -16.77692 -16.63416 -16.25330 -15.50517 -15.46974 -15.30578 -15.06450 -14.82899 -14.61737 -14.46140 -14.34461 -13.79162 -13.62863 -13.41791 -13.20673 -13.13675 -12.67220 -12.58466 -12.55223 -12.51294 -12.34331 -12.25031 -12.03511 -11.94549 -11.84852 -11.71231 -11.38462 -11.36512 -11.06049 -11.04927 -10.60368 -9.92648 -8.80033 -8.67505 -7.89057 -5.37746 -0.16441 0.61542 0.79001 1.38884 1.49253 1.51403 1.57925 1.60146 1.74879 1.96130 2.51106 3.23095 3.26184 3.44489 3.58329 3.68565 3.85114 3.89394 3.99159 4.13417 4.15406 4.20707 4.27154 4.37662 4.39004 4.50165 4.63603 4.63941 4.69318 4.76591 4.77285 4.77685 4.82799 5.00172 5.03771 5.19600 5.19971 5.22132 5.41544 5.58532 5.65250 5.80751 6.32637 6.34961 6.92623 7.09240 7.54246 7.78250 8.31379 9.16325 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028906 B = 0.002249 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.412272 B =12447.776150 C =12961.537725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 C -0.157 4.157 4 N -0.454 5.454 5 C 0.178 3.822 6 N -0.334 5.334 7 N -0.327 5.327 8 C 0.134 3.866 9 S 0.072 5.928 10 C -0.131 4.131 11 C 0.529 3.471 12 O -0.572 6.572 13 N -0.592 5.592 14 C 0.104 3.896 15 C 0.168 3.832 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.075 0.925 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.276 1.276 25 C 0.125 3.875 26 C 0.096 3.904 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.262 0.738 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.072 0.928 40 H -0.006 1.006 41 H 0.251 0.749 42 H 0.016 0.984 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 27.446 1.600 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 C -0.215 4.215 4 N -0.148 5.148 5 C -0.112 4.112 6 N -0.172 5.172 7 N -0.172 5.172 8 C -0.242 4.242 9 S 0.298 5.702 10 C -0.282 4.282 11 C 0.316 3.684 12 O -0.453 6.453 13 N -0.323 5.323 14 C -0.020 4.020 15 C 0.042 3.958 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.093 0.907 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.200 1.200 23 H -0.224 1.224 24 H -0.202 1.202 25 C -0.001 4.001 26 C -0.028 4.028 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.277 0.723 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.012 0.988 41 H 0.060 0.940 42 H 0.034 0.966 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.719 26.894 0.980 28.613 hybrid contribution 0.237 -0.940 0.238 0.998 sum -9.482 25.954 1.218 27.659 Atomic orbital electron populations 1.22196 0.90797 1.03127 1.05505 1.21957 0.97253 0.94965 0.84075 1.22187 1.01547 0.92277 1.05485 1.47127 1.37407 1.20827 1.09478 1.27337 1.02272 1.02539 0.79056 1.73855 1.11624 1.03888 1.27835 1.74598 1.22022 1.22229 0.98321 1.27267 1.01701 0.94743 1.00487 1.86028 1.59770 1.27036 0.97332 1.23636 1.04500 0.98714 1.01375 1.19935 0.78596 0.81212 0.88651 1.90681 1.62768 1.73291 1.18533 1.47999 1.48857 1.26631 1.08819 1.22184 0.97123 0.90270 0.92419 1.20915 0.96796 0.92175 0.85948 1.44270 1.57644 1.30293 1.01013 1.19523 1.21333 0.92825 1.05641 0.90728 1.25861 1.00324 0.98763 0.99652 1.70174 1.35979 1.28272 1.23797 0.85308 0.79545 0.78087 0.77280 1.20040 1.22398 1.20201 1.21549 0.94862 0.89507 0.94180 1.22544 1.03030 0.98118 0.79124 0.93115 0.90015 0.87721 0.88235 0.92923 0.87730 0.90052 0.72257 0.85055 0.84202 0.91097 0.90103 0.91002 0.98796 0.94009 0.96593 0.90111 0.89961 0.86982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.26 71.98 0.67 -0.25 16 2 C 0.12 1.16 3.60 44.99 0.16 1.32 16 3 C -0.16 -0.83 9.26 71.98 0.67 -0.16 16 4 N -0.45 -7.67 2.66 -505.25 -1.34 -9.01 16 5 C 0.18 2.91 11.91 179.77 2.14 5.05 16 6 N -0.33 -8.63 12.18 -59.32 -0.72 -9.36 16 7 N -0.33 -9.26 11.60 -56.85 -0.66 -9.92 16 8 C 0.13 3.20 8.07 179.55 1.45 4.65 16 9 S 0.07 1.75 20.59 -56.49 -1.16 0.59 16 10 C -0.13 -3.36 4.06 71.24 0.29 -3.07 16 11 C 0.53 17.35 7.72 87.66 0.68 18.03 16 12 O -0.57 -22.09 15.27 -3.02 -0.05 -22.13 16 13 N -0.59 -20.33 2.95 -817.24 -2.41 -22.74 16 14 C 0.10 4.10 6.59 86.42 0.57 4.67 16 15 C 0.17 8.14 5.51 86.42 0.48 8.62 16 16 N -0.61 -29.55 2.96 -697.44 -2.06 -31.61 16 17 C -0.26 -13.92 9.57 84.03 0.80 -13.11 16 18 H 0.08 3.76 7.89 -2.91 -0.02 3.74 16 19 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 20 N -0.94 -54.88 11.20 21.65 0.24 -54.64 16 21 Si 0.97 43.92 29.59 68.60 2.03 45.95 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 25 C 0.13 4.81 6.70 86.55 0.58 5.39 16 26 C 0.10 2.87 6.52 86.55 0.56 3.44 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 0.25 7.98 -2.39 -0.02 0.23 16 29 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 30 H 0.10 1.15 7.33 -2.39 -0.02 1.13 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.08 0.22 7.99 -2.38 -0.02 0.20 16 34 H 0.26 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.13 3.25 7.72 -2.39 -0.02 3.23 16 36 H 0.14 3.14 7.91 -2.39 -0.02 3.12 16 37 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.08 3.21 7.00 -2.38 -0.02 3.19 16 39 H 0.07 3.89 6.00 -2.39 -0.01 3.87 16 40 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 43 H 0.08 2.89 7.93 -2.39 -0.02 2.88 16 44 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.11 2.60 5.91 -2.39 -0.01 2.58 16 Total: -1.00 -75.03 379.16 4.32 -70.71 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.99 Total: 9.93 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: 9.46 Total: 32.23 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -6.95 Total: -137.28 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.16 Total: 0.59 kcal Total: -75.03 4.32 -70.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330815827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.338 kcal (2) G-P(sol) polarization free energy of solvation -75.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds