Wall clock time and date at job start Sat Apr 11 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30130 * 121.06239 * 2 1 4 4 S 1.69944 * 105.76417 * 179.97438 * 3 2 1 5 5 C 1.72304 * 94.57465 * 359.97438 * 4 3 2 6 6 N 1.38318 * 127.50385 * 180.02562 * 5 4 3 7 7 C 1.46895 * 111.00249 * 124.32602 * 6 5 4 8 8 C 1.53228 * 109.34167 * 172.74518 * 7 6 5 9 9 N 1.47083 * 108.52212 * 53.83090 * 8 7 6 10 10 C 1.34777 * 120.88168 * 128.83529 * 9 8 7 11 11 O 1.21286 * 119.99889 * 179.97438 * 10 9 8 12 12 C 1.50701 * 119.99830 * 359.97438 * 10 9 8 13 13 H 1.08996 * 109.47561 * 319.99749 * 12 10 9 14 14 N 1.46905 * 109.46971 * 199.99874 * 12 10 9 15 15 C 1.53006 * 109.47056 * 80.00347 * 12 10 9 16 16 C 1.53000 * 109.47025 * 184.99826 * 15 12 10 17 17 C 1.50702 * 109.46976 * 180.02562 * 16 15 12 18 18 H 1.08000 * 119.99816 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99767 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99766 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00353 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47223 * 89.99935 * 21 19 17 23 23 H 1.48499 * 109.47536 * 209.99760 * 21 19 17 24 24 H 1.48500 * 109.47098 * 330.00019 * 21 19 17 25 25 C 1.47072 * 118.23733 * 308.81485 * 9 8 7 26 26 C 1.46906 * 110.99867 * 0.02562 * 6 5 4 27 27 N 1.31282 * 121.06103 * 180.29139 * 2 1 3 28 28 H 1.09001 * 109.47231 * 90.02720 * 1 2 3 29 29 H 1.09001 * 109.47173 * 210.02927 * 1 2 3 30 30 H 1.09001 * 109.47001 * 330.03092 * 1 2 3 31 31 H 1.08997 * 109.49089 * 292.71110 * 7 6 5 32 32 H 1.09007 * 109.49281 * 52.78248 * 7 6 5 33 33 H 1.08995 * 109.63228 * 294.12148 * 8 7 6 34 34 H 1.09002 * 109.63099 * 173.54032 * 8 7 6 35 35 H 1.00897 * 110.99867 * 176.04737 * 14 12 10 36 36 H 1.00901 * 110.99988 * 300.00416 * 14 12 10 37 37 H 1.09000 * 109.46674 * 304.99695 * 15 12 10 38 38 H 1.09003 * 109.47217 * 64.99858 * 15 12 10 39 39 H 1.09006 * 109.46887 * 299.99367 * 16 15 12 40 40 H 1.08996 * 109.46946 * 59.99623 * 16 15 12 41 41 H 0.96992 * 120.00265 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.62875 * 291.47435 * 25 9 8 43 43 H 1.08997 * 109.63057 * 170.89280 * 25 9 8 44 44 H 1.08997 * 109.49116 * 307.21311 * 26 6 5 45 45 H 1.08992 * 109.49351 * 67.26776 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1147 0.0000 4 16 3.8177 0.6663 0.0007 5 6 3.4971 -1.0266 0.0018 6 7 4.4185 -2.0582 0.0032 7 6 4.1917 -2.9652 1.1362 8 6 5.1094 -4.1848 1.0016 9 7 6.4943 -3.7131 0.8502 10 6 7.4796 -4.1981 1.6314 11 8 8.6162 -3.7980 1.4925 12 6 7.1692 -5.2374 2.6776 13 1 6.2218 -4.9962 3.1596 14 7 8.2398 -5.2548 3.6834 15 6 7.0689 -6.6132 2.0157 16 6 6.6318 -7.6482 3.0542 17 6 6.5337 -9.0034 2.4024 18 1 6.7601 -9.1152 1.3523 19 6 6.1550 -10.1005 3.1467 20 7 6.0689 -11.2831 2.5777 21 14 5.7642 -9.9073 4.9630 22 1 4.3194 -9.6069 5.1293 23 1 6.0931 -11.1672 5.6769 24 1 6.5694 -8.7942 5.5269 25 6 6.7754 -2.6984 -0.1767 26 6 5.7921 -1.5371 0.0044 27 7 2.1844 -1.1246 -0.0057 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3633 0.8903 0.5134 31 1 4.4124 -2.4450 2.0683 32 1 3.1515 -3.2911 1.1387 33 1 4.8221 -4.7642 0.1243 34 1 5.0292 -4.8039 1.8951 35 1 8.0239 -5.8980 4.4302 36 1 9.1290 -5.4762 3.2612 37 1 6.3365 -6.5759 1.2093 38 1 8.0414 -6.8933 1.6106 39 1 7.3644 -7.6855 3.8606 40 1 5.6595 -7.3681 3.4593 41 1 5.8022 -12.0549 3.1011 42 1 6.6481 -3.1349 -1.1673 43 1 7.7965 -2.3347 -0.0622 44 1 5.9125 -0.8275 -0.8141 45 1 5.9903 -1.0365 0.9520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424148594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:07 Heat of formation + Delta-G solvation = 33.504534 kcal Electronic energy + Delta-G solvation = -27209.282437 eV Core-core repulsion = 23388.871139 eV Total energy + Delta-G solvation = -3820.411298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.05038 -40.30564 -38.68858 -35.82011 -35.26393 -32.89531 -32.36839 -31.74888 -30.39640 -30.06207 -28.51673 -26.77602 -24.64235 -24.23777 -23.31847 -21.65568 -20.34078 -20.13970 -19.46786 -18.97393 -17.95097 -16.99788 -16.67981 -16.30269 -16.11052 -15.54914 -15.50014 -14.90046 -14.79755 -14.50133 -14.32992 -14.26424 -13.79379 -13.36902 -13.12299 -13.04970 -12.93899 -12.74408 -12.71621 -12.41135 -12.11053 -11.99967 -11.87604 -11.84044 -11.72657 -11.44311 -11.12203 -11.03308 -10.43348 -10.15478 -10.13102 -9.94070 -9.80155 -9.51066 -9.36796 -9.05383 -8.81378 -8.66675 -8.42323 -6.15893 -4.15957 0.05556 0.62488 1.31330 2.14269 2.44976 2.66418 2.80277 3.20959 3.29861 3.30377 3.77845 4.17114 4.31472 4.33256 4.44195 4.53769 4.73481 4.79243 4.83666 4.89331 4.95246 5.04064 5.11088 5.16395 5.19738 5.25182 5.34892 5.40768 5.46774 5.47870 5.61229 5.62970 5.87898 6.01017 6.04396 6.18199 6.26462 6.56565 7.01473 7.11276 7.13829 7.24789 7.36054 7.60422 7.69101 8.16197 8.39647 8.87983 9.45019 10.97274 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.002593 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.677329 B =10795.818206 C =12004.570172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.289 3.711 3 N -0.488 5.488 4 S 0.183 5.817 5 C 0.277 3.723 6 N -0.427 5.427 7 C 0.048 3.952 8 C 0.108 3.892 9 N -0.622 5.622 10 C 0.532 3.468 11 O -0.531 6.531 12 C 0.070 3.930 13 H 0.097 0.903 14 N -0.831 5.831 15 C -0.131 4.131 16 C -0.010 4.010 17 C -0.525 4.525 18 H 0.071 0.929 19 C 0.068 3.932 20 N -0.899 5.899 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 C 0.121 3.879 26 C 0.029 3.971 27 N -0.536 5.536 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.352 0.648 36 H 0.349 0.651 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.016 0.984 40 H 0.014 0.986 41 H 0.264 0.736 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 23.140 -4.416 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.001 4.001 3 N -0.320 5.320 4 S 0.320 5.680 5 C -0.102 4.102 6 N -0.147 5.147 7 C -0.080 4.080 8 C -0.016 4.016 9 N -0.358 5.358 10 C 0.321 3.679 11 O -0.406 6.406 12 C -0.045 4.045 13 H 0.115 0.885 14 N -0.363 5.363 15 C -0.171 4.171 16 C -0.047 4.047 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.134 4.134 20 N -0.538 5.538 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 C -0.002 4.002 26 C -0.099 4.099 27 N -0.265 5.265 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.127 0.873 44 H 0.120 0.880 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.309 24.844 -4.753 26.070 hybrid contribution -0.687 -1.572 1.026 1.999 sum -6.996 23.272 -3.727 24.585 Atomic orbital electron populations 1.20435 0.83528 1.04542 1.04340 1.23458 1.00129 0.82128 0.94385 1.77541 0.97939 1.25896 1.30655 1.85113 1.13245 1.01161 1.68433 1.27028 0.92418 0.95821 0.94901 1.57933 1.02346 1.12573 1.41873 1.22857 1.02983 0.93032 0.89117 1.22034 0.79569 0.94876 1.05110 1.48172 1.08617 1.42274 1.36691 1.20842 0.84314 0.81640 0.81114 1.90648 1.20816 1.59699 1.69465 1.21568 0.96773 0.94008 0.92114 0.88486 1.58753 1.04816 1.59864 1.12886 1.22241 1.02388 0.92315 1.00139 1.19572 0.95746 0.94847 0.94559 1.21039 1.46714 0.90466 0.98016 0.91040 1.25043 0.94776 0.95159 0.98432 1.69906 1.47837 0.99438 1.36601 0.86772 0.79068 0.77790 0.85574 1.20225 1.21333 1.19001 1.21592 0.99183 0.87263 0.92208 1.23026 0.84585 0.98578 1.03715 1.67373 1.03586 1.29791 1.25730 0.89255 0.89025 0.89491 0.91996 0.86969 0.89217 0.87232 0.83326 0.83756 0.91715 0.91890 0.96591 0.96824 0.92581 0.89975 0.87294 0.87971 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.42 36.01 0.38 -0.06 16 2 C 0.29 2.99 7.56 -159.04 -1.20 1.79 16 3 N -0.49 -5.51 12.15 29.54 0.36 -5.15 16 4 S 0.18 1.77 22.15 -107.50 -2.38 -0.61 16 5 C 0.28 2.82 7.02 -86.35 -0.61 2.21 16 6 N -0.43 -3.90 4.69 -174.24 -0.82 -4.72 16 7 C 0.05 0.42 5.55 -3.71 -0.02 0.40 16 8 C 0.11 1.03 5.73 -3.61 -0.02 1.01 16 9 N -0.62 -7.00 3.01 -172.47 -0.52 -7.52 16 10 C 0.53 7.70 6.96 -10.98 -0.08 7.62 16 11 O -0.53 -9.21 15.70 5.55 0.09 -9.12 16 12 C 0.07 1.03 2.36 -68.86 -0.16 0.87 16 13 H 0.10 1.27 6.52 -51.93 -0.34 0.93 16 14 N -0.83 -12.48 8.94 -5.65 -0.05 -12.53 16 15 C -0.13 -2.28 4.58 -26.73 -0.12 -2.40 16 16 C -0.01 -0.21 3.81 -27.88 -0.11 -0.31 16 17 C -0.52 -13.99 9.66 -34.44 -0.33 -14.33 16 18 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 19 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 20 N -0.90 -26.75 13.96 55.43 0.77 -25.98 16 21 Si 0.88 20.45 27.47 -169.99 -4.67 15.78 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 25 C 0.12 1.12 6.60 -3.60 -0.02 1.09 16 26 C 0.03 0.22 4.76 -3.70 -0.02 0.21 16 27 N -0.54 -5.97 10.36 -14.58 -0.15 -6.12 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.11 0.96 7.89 -51.93 -0.41 0.55 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.11 1.05 5.33 -51.93 -0.28 0.77 16 35 H 0.35 5.15 7.55 -39.29 -0.30 4.85 16 36 H 0.35 5.38 8.58 -39.29 -0.34 5.04 16 37 H 0.06 1.09 7.25 -51.93 -0.38 0.71 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.34 5.92 -51.93 -0.31 0.03 16 40 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.11 1.07 7.06 -51.93 -0.37 0.71 16 44 H 0.10 0.63 7.52 -51.93 -0.39 0.24 16 45 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -33.15 372.25 -10.63 -43.78 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.46 Total: 6.71 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.41 Total: -0.14 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.40 Total: -62.02 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.38 Total: -0.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.15 -10.63 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424148594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.289 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds