Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.35628 * 125.67628 * 261.01930 * 3 2 1 5 5 C 1.35516 * 108.85481 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 126.07798 * 179.73640 * 5 4 3 7 7 C 1.39896 * 107.84705 * 359.97438 * 5 4 3 8 8 C 1.37636 * 125.67864 * 80.98832 * 3 2 1 9 9 C 1.46676 * 126.21695 * 359.97438 * 8 3 2 10 10 O 1.21695 * 120.00342 * 5.50402 * 9 8 3 11 11 N 1.34776 * 119.99362 * 185.50070 * 9 8 3 12 12 C 1.46501 * 119.99828 * 185.14274 * 11 9 8 13 13 H 1.09002 * 109.47539 * 34.99070 * 12 11 9 14 14 C 1.53005 * 109.46693 * 275.00176 * 12 11 9 15 15 C 1.53003 * 109.46914 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47548 * 59.99532 * 15 14 12 17 17 C 1.52995 * 109.47039 * 300.00217 * 16 15 14 18 18 C 1.52995 * 109.47496 * 154.99876 * 12 11 9 19 19 H 1.09005 * 109.47268 * 59.99861 * 18 12 11 20 20 N 1.46493 * 109.47403 * 299.99821 * 18 12 11 21 21 C 1.36935 * 120.00428 * 154.99697 * 20 18 12 22 22 H 1.07998 * 119.99998 * 0.02562 * 21 20 18 23 23 C 1.38817 * 120.00071 * 180.02562 * 21 20 18 24 24 N 1.31612 * 119.99688 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00056 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47026 * 90.00147 * 25 23 21 27 27 H 1.48496 * 109.47384 * 210.00069 * 25 23 21 28 28 H 1.48496 * 109.47284 * 330.00302 * 25 23 21 29 29 H 1.09005 * 109.46843 * 60.00219 * 1 2 3 30 30 H 1.08997 * 109.46804 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47135 * 299.99936 * 1 2 3 32 32 H 1.09002 * 109.46885 * 239.99747 * 2 1 3 33 33 H 1.08997 * 109.47015 * 120.00409 * 2 1 3 34 34 H 1.07999 * 125.57529 * 359.97438 * 4 3 2 35 35 H 1.08003 * 126.45035 * 180.02562 * 7 5 4 36 36 H 0.96991 * 120.00557 * 5.13596 * 11 9 8 37 37 H 1.09005 * 109.46905 * 299.99425 * 14 12 11 38 38 H 1.08996 * 109.47482 * 60.00038 * 14 12 11 39 39 H 1.08998 * 109.46779 * 299.98936 * 15 14 12 40 40 H 1.09001 * 109.47077 * 179.97438 * 15 14 12 41 41 H 1.09004 * 109.47187 * 179.97438 * 16 15 14 42 42 H 1.08998 * 109.46876 * 60.00176 * 16 15 14 43 43 H 1.08998 * 109.47253 * 299.99728 * 17 16 15 44 44 H 1.09007 * 109.46761 * 179.97438 * 17 16 15 45 45 H 0.97006 * 119.99496 * 334.99956 * 20 18 12 46 46 H 0.97003 * 119.99657 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4442 2.0696 -1.0882 5 6 2.8184 3.3132 -0.7010 6 17 3.4399 4.5620 -1.7343 7 6 2.6200 3.4099 0.6805 8 6 2.1209 2.1964 1.1042 9 6 1.7626 1.8397 2.4811 10 8 1.4235 0.7013 2.7462 11 7 1.8089 2.7726 3.4526 12 6 1.5610 2.3925 4.8456 13 1 1.9589 1.3939 5.0261 14 6 0.0548 2.3976 5.1151 15 6 -0.2042 2.0012 6.5700 16 6 0.4840 3.0011 7.5014 17 6 1.9900 2.9960 7.2317 18 6 2.2492 3.3920 5.7773 19 1 1.8512 4.3906 5.5968 20 7 3.6912 3.3871 5.5192 21 6 4.4439 4.4916 5.8171 22 1 3.9745 5.3662 6.2427 23 6 5.8103 4.4871 5.5720 24 7 6.5337 5.5485 5.8588 25 14 6.6223 2.9741 4.8366 26 1 6.6084 3.0757 3.3551 27 1 8.0258 2.8844 5.3134 28 1 5.8783 1.7595 5.2564 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.4794 1.6890 -2.0983 35 1 2.8203 4.2726 1.2987 36 1 2.0066 3.6956 3.2297 37 1 -0.3432 3.3962 4.9346 38 1 -0.4355 1.6855 4.4514 39 1 0.1938 1.0028 6.7509 40 1 -1.2771 2.0053 6.7622 41 1 0.2991 2.7189 8.5379 42 1 0.0859 3.9995 7.3204 43 1 2.3882 1.9976 7.4127 44 1 2.4803 3.7087 7.8950 45 1 4.1129 2.6014 5.1373 46 1 7.4886 5.5452 5.6879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085425124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = 1.923130 kcal Electronic energy + Delta-G solvation = -28169.472259 eV Core-core repulsion = 24313.355031 eV Total energy + Delta-G solvation = -3856.117228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59455 -39.55570 -37.76644 -36.42765 -34.54441 -34.16583 -33.60434 -31.37159 -30.28443 -29.35581 -28.93166 -27.84922 -23.90898 -23.52342 -23.18757 -21.54350 -21.02999 -20.59354 -20.03652 -19.23762 -18.11087 -17.44016 -16.07778 -15.91440 -15.54786 -15.05383 -14.75197 -14.55408 -14.27802 -14.16939 -13.97209 -13.60843 -13.50741 -13.21392 -13.14774 -12.87138 -12.79518 -12.59783 -12.32705 -12.29146 -12.23849 -11.50726 -11.42868 -11.37400 -11.02227 -10.96182 -10.88137 -10.86835 -10.61753 -10.38996 -10.13746 -9.91981 -9.71251 -9.60980 -8.96418 -8.83853 -8.73288 -8.27295 -7.30994 -5.79729 -3.15716 1.37953 2.05719 2.39799 2.73574 3.37716 3.39831 3.41970 3.46414 3.51357 4.49702 4.57829 4.70576 4.77903 4.81739 4.89011 5.02625 5.06952 5.14591 5.21032 5.37483 5.39430 5.46132 5.46962 5.57007 5.64785 5.66163 5.72526 5.83557 5.88264 5.89019 5.91016 6.01745 6.21438 6.32840 6.35122 6.38734 6.40123 6.43862 6.68608 6.72908 6.79329 6.93525 6.96734 7.71978 7.95073 8.33506 8.38999 9.16863 9.89862 10.08851 11.38253 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008306 B = 0.004734 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3370.111856 B = 5913.146595 C = 8135.505082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.402 5.402 4 C 0.027 3.973 5 C -0.121 4.121 6 Cl -0.052 7.052 7 C -0.124 4.124 8 C -0.032 4.032 9 C 0.589 3.411 10 O -0.554 6.554 11 N -0.697 5.697 12 C 0.142 3.858 13 H 0.084 0.916 14 C -0.123 4.123 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.133 4.133 18 C 0.178 3.822 19 H 0.061 0.939 20 N -0.746 5.746 21 C -0.245 4.245 22 H 0.091 0.909 23 C 0.011 3.989 24 N -0.931 5.931 25 Si 0.878 3.122 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.175 0.825 35 H 0.157 0.843 36 H 0.408 0.592 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.361 0.639 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.653 -8.891 -11.604 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.075 5.075 4 C -0.109 4.109 5 C -0.154 4.154 6 Cl -0.023 7.023 7 C -0.150 4.150 8 C -0.146 4.146 9 C 0.376 3.624 10 O -0.434 6.434 11 N -0.346 5.346 12 C 0.037 3.963 13 H 0.102 0.898 14 C -0.162 4.162 15 C -0.152 4.152 16 C -0.158 4.158 17 C -0.173 4.173 18 C 0.068 3.932 19 H 0.079 0.921 20 N -0.388 5.388 21 C -0.374 4.374 22 H 0.109 0.891 23 C -0.185 4.185 24 N -0.578 5.578 25 Si 0.709 3.291 26 H -0.209 1.209 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.192 0.808 35 H 0.175 0.825 36 H 0.243 0.757 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.849 -9.723 -11.387 21.088 hybrid contribution 1.086 -0.441 -0.800 1.419 sum -13.763 -10.165 -12.187 21.006 Atomic orbital electron populations 1.22067 0.93835 1.03093 1.02981 1.22077 0.96108 0.78935 1.05065 1.43973 1.46234 1.11718 1.05583 1.21647 1.04988 0.91818 0.92475 1.19896 1.11911 0.91518 0.92051 1.98324 1.86180 1.51470 1.66353 1.21361 1.02965 0.97193 0.93517 1.20106 1.13779 0.91806 0.88904 1.16848 0.77382 0.85074 0.83104 1.90759 1.49310 1.20049 1.83276 1.45666 1.70303 1.11830 1.06759 1.21395 0.95005 1.00375 0.79561 0.89825 1.21864 0.95673 1.01824 0.96867 1.21479 0.99845 0.99527 0.94339 1.21581 0.96521 0.99123 0.98584 1.22174 0.94098 1.01994 0.99078 1.20440 0.84941 0.96352 0.91512 0.92104 1.42784 1.02753 1.16376 1.76914 1.19019 0.89965 0.92925 1.35527 0.89099 1.24616 0.96164 0.96699 1.01067 1.69689 1.06280 1.28296 1.53559 0.86650 0.79097 0.83824 0.79561 1.20896 1.21811 1.20500 0.92400 0.90666 0.91239 0.89236 0.87395 0.80781 0.82547 0.75657 0.91753 0.91747 0.92040 0.92257 0.92505 0.92126 0.92575 0.91018 0.80578 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 10.16 37.16 0.38 -1.07 16 2 C 0.10 0.97 6.11 -4.04 -0.02 0.95 16 3 N -0.40 -4.92 2.77 -112.83 -0.31 -5.23 16 4 C 0.03 0.31 11.34 -16.85 -0.19 0.12 16 5 C -0.12 -1.58 6.66 -39.93 -0.27 -1.85 16 6 Cl -0.05 -0.65 29.30 -51.86 -1.52 -2.16 16 7 C -0.12 -1.77 10.34 -39.09 -0.40 -2.18 16 8 C -0.03 -0.47 6.88 -81.98 -0.56 -1.03 16 9 C 0.59 9.28 7.73 -12.85 -0.10 9.18 16 10 O -0.55 -9.47 13.91 5.19 0.07 -9.40 16 11 N -0.70 -10.64 4.88 -55.11 -0.27 -10.91 16 12 C 0.14 2.19 1.94 -67.93 -0.13 2.06 16 13 H 0.08 1.45 7.66 -51.93 -0.40 1.05 16 14 C -0.12 -1.60 5.50 -26.73 -0.15 -1.75 16 15 C -0.11 -1.35 5.92 -26.73 -0.16 -1.51 16 16 C -0.12 -1.53 5.92 -26.74 -0.16 -1.69 16 17 C -0.13 -2.15 5.50 -26.76 -0.15 -2.30 16 18 C 0.18 3.12 2.29 -67.96 -0.16 2.96 16 19 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 20 N -0.75 -16.53 4.76 -53.45 -0.25 -16.78 16 21 C -0.24 -6.52 10.41 -15.06 -0.16 -6.67 16 22 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 23 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 24 N -0.93 -28.58 13.97 55.49 0.78 -27.80 16 25 Si 0.88 22.18 27.74 -169.99 -4.71 17.46 16 26 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.79 7.59 -51.93 -0.39 0.40 16 32 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.11 1.26 6.74 -51.93 -0.35 0.91 16 34 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.16 2.18 7.49 -52.48 -0.39 1.78 16 36 H 0.41 6.02 7.55 -40.82 -0.31 5.71 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.36 8.30 5.66 -40.82 -0.23 8.07 16 46 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -31.31 384.92 -9.90 -41.20 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -7.15 Total: 12.38 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.32 Total: -4.56 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.06 Total: -60.73 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.52 Total: -2.16 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.31 -9.90 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085425124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.128 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds