Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47280 * 2 1 4 4 C 1.35632 * 125.67465 * 260.73452 * 3 2 1 5 5 C 1.35518 * 108.84895 * 179.86475 * 4 3 2 6 6 Cl 1.73604 * 126.07009 * 180.15626 * 5 4 3 7 7 C 1.39879 * 107.85273 * 0.40023 * 5 4 3 8 8 C 1.37637 * 125.67827 * 81.04681 * 3 2 1 9 9 C 1.46667 * 126.22080 * 359.97438 * 8 3 2 10 10 O 1.21699 * 120.00252 * 5.43592 * 9 8 3 11 11 N 1.34777 * 120.00009 * 185.42583 * 9 8 3 12 12 C 1.46500 * 120.00253 * 185.17952 * 11 9 8 13 13 C 1.53001 * 109.47118 * 180.02562 * 12 11 9 14 14 H 1.09002 * 110.01822 * 305.06414 * 13 12 11 15 15 C 1.53875 * 110.03142 * 66.45919 * 13 12 11 16 16 C 1.54260 * 106.59893 * 119.28358 * 15 13 12 17 17 C 1.54891 * 104.19761 * 23.61033 * 16 15 13 18 18 H 1.08993 * 110.75877 * 80.36873 * 17 16 15 19 19 N 1.46494 * 110.75620 * 203.55727 * 17 16 15 20 20 C 1.36935 * 120.00356 * 273.54580 * 19 17 16 21 21 H 1.07997 * 119.99988 * 359.97438 * 20 19 17 22 22 C 1.38814 * 120.00127 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99756 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46959 * 89.99930 * 24 22 20 26 26 H 1.48500 * 109.47104 * 209.99769 * 24 22 20 27 27 H 1.48503 * 109.47176 * 330.00183 * 24 22 20 28 28 C 1.54265 * 110.03213 * 183.62453 * 13 12 11 29 29 H 1.08999 * 109.47123 * 60.00094 * 1 2 3 30 30 H 1.09003 * 109.47319 * 300.00331 * 1 2 3 31 31 H 1.08999 * 109.47836 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47123 * 119.99906 * 2 1 3 33 33 H 1.09003 * 109.47319 * 239.99668 * 2 1 3 34 34 H 1.07995 * 125.57507 * 359.97438 * 4 3 2 35 35 H 1.08002 * 126.45210 * 179.79584 * 7 5 4 36 36 H 0.97000 * 119.99858 * 5.19495 * 11 9 8 37 37 H 1.09003 * 109.47386 * 300.00802 * 12 11 9 38 38 H 1.08997 * 109.46835 * 60.00635 * 12 11 9 39 39 H 1.09009 * 110.02835 * 238.56788 * 15 13 12 40 40 H 1.08995 * 110.03388 * 359.97438 * 15 13 12 41 41 H 1.09000 * 110.48708 * 142.28403 * 16 15 13 42 42 H 1.08997 * 110.48650 * 264.79364 * 16 15 13 43 43 H 0.97003 * 119.99845 * 93.54491 * 19 17 16 44 44 H 0.96998 * 119.99376 * 179.97438 * 23 22 20 45 45 H 1.09000 * 110.48677 * 335.78135 * 28 13 12 46 46 H 1.09002 * 110.48960 * 98.42347 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4492 2.0678 -1.0874 5 6 2.8193 3.3128 -0.7008 6 17 3.4351 4.5636 -1.7352 7 6 2.6222 3.4091 0.6807 8 6 2.1219 2.1960 1.1044 9 6 1.7649 1.8389 2.4814 10 8 1.4249 0.7008 2.7463 11 7 1.8136 2.7711 3.4536 12 6 1.5678 2.3903 4.8467 13 6 1.6816 3.6265 5.7410 14 1 2.6478 4.1082 5.5907 15 6 0.5451 4.6138 5.4226 16 6 -0.2726 4.7778 6.7204 17 6 0.7216 4.3994 7.8462 18 1 1.3836 5.2348 8.0739 19 7 0.0046 3.9654 9.0477 20 6 -0.4134 4.8901 9.9672 21 1 -0.2142 5.9393 9.8068 22 6 -1.0924 4.4787 11.1059 23 7 -1.3348 3.2000 11.3017 24 14 -1.6619 5.7402 12.3605 25 1 -3.0301 6.2011 12.0129 26 1 -1.6756 5.1235 13.7113 27 1 -0.7329 6.8987 12.3545 28 6 1.5148 3.2250 7.2212 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 2.4891 1.6855 -2.0967 35 1 2.8233 4.2715 1.2990 36 1 2.0113 3.6943 3.2308 37 1 0.5670 1.9679 4.9367 38 1 2.3043 1.6487 5.1559 39 1 0.9598 5.5749 5.1185 40 1 -0.0872 4.2125 4.6307 41 1 -0.6035 5.8101 6.8348 42 1 -1.1276 4.1019 6.7205 43 1 -0.1741 3.0229 9.1920 44 1 -1.8088 2.9126 12.0976 45 1 0.9497 2.2966 7.3033 46 1 2.4883 3.1239 7.7011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086877458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = -19.718002 kcal Electronic energy + Delta-G solvation = -26455.093314 eV Core-core repulsion = 22598.037657 eV Total energy + Delta-G solvation = -3857.055658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.56080 -40.44812 -39.26945 -37.36572 -36.38874 -35.32476 -34.67129 -32.64221 -31.07654 -30.21715 -29.81609 -28.65555 -25.98510 -24.89154 -24.58018 -23.32766 -21.69544 -21.39192 -20.78161 -20.32792 -19.17598 -18.86696 -17.26225 -17.13949 -16.78826 -16.55161 -16.38075 -15.74715 -15.59827 -15.46741 -15.19707 -15.04730 -14.84357 -14.29423 -14.14175 -14.01940 -13.79320 -13.63292 -13.57306 -13.30862 -13.00251 -12.94541 -12.69143 -12.37814 -12.34165 -12.20086 -12.12647 -11.96655 -11.82026 -11.76844 -11.63757 -11.50697 -11.24691 -11.04743 -10.88488 -10.18252 -9.72471 -9.24123 -8.97013 -7.93345 -5.21227 0.34377 1.14366 1.44575 1.47105 1.48783 1.57121 1.72813 2.25738 2.39918 2.57365 3.38966 3.60909 3.71090 3.77138 3.80881 3.83989 3.96898 4.07880 4.21176 4.31783 4.36655 4.40078 4.46438 4.49722 4.63895 4.65841 4.72406 4.80572 4.81129 4.83060 4.89492 4.97098 5.10534 5.13535 5.15409 5.21703 5.32741 5.41545 5.47944 5.51297 5.56583 5.65666 5.74532 6.05831 6.29748 6.49569 7.13427 7.34819 8.13879 8.35166 9.30432 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.001933 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.198989 B =14479.153390 C =15415.106878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.096 3.904 3 N -0.403 5.403 4 C 0.047 3.953 5 C -0.142 4.142 6 Cl -0.048 7.048 7 C -0.123 4.123 8 C -0.060 4.060 9 C 0.583 3.417 10 O -0.578 6.578 11 N -0.702 5.702 12 C 0.138 3.862 13 C -0.084 4.084 14 H 0.105 0.895 15 C -0.109 4.109 16 C -0.139 4.139 17 C 0.164 3.836 18 H 0.053 0.947 19 N -0.737 5.737 20 C -0.236 4.236 21 H 0.076 0.924 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.972 3.028 25 H -0.289 1.289 26 H -0.297 1.297 27 H -0.268 1.268 28 C -0.115 4.115 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.208 0.792 35 H 0.169 0.831 36 H 0.416 0.584 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.055 0.945 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.794 -1.899 -31.410 33.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.076 5.076 4 C -0.091 4.091 5 C -0.174 4.174 6 Cl -0.019 7.019 7 C -0.149 4.149 8 C -0.173 4.173 9 C 0.372 3.628 10 O -0.460 6.460 11 N -0.353 5.353 12 C 0.015 3.985 13 C -0.103 4.103 14 H 0.123 0.877 15 C -0.147 4.147 16 C -0.179 4.179 17 C 0.055 3.945 18 H 0.071 0.929 19 N -0.376 5.376 20 C -0.368 4.368 21 H 0.094 0.906 22 C -0.273 4.273 23 N -0.623 5.623 24 Si 0.801 3.199 25 H -0.216 1.216 26 H -0.224 1.224 27 H -0.193 1.193 28 C -0.154 4.154 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.145 0.855 34 H 0.224 0.776 35 H 0.187 0.813 36 H 0.253 0.747 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.203 0.797 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.468 -2.799 -31.144 32.975 hybrid contribution -0.672 0.588 1.088 1.407 sum 9.796 -2.211 -30.056 31.690 Atomic orbital electron populations 1.22027 0.93790 1.03924 1.01870 1.22228 0.96120 0.78141 1.05918 1.44236 1.45472 1.12360 1.05542 1.22255 1.02109 0.91298 0.93427 1.20029 1.13179 0.92141 0.92059 1.98334 1.86352 1.51138 1.66123 1.21468 1.02721 0.96736 0.94023 1.19920 1.15838 0.93048 0.88537 1.17149 0.76999 0.84726 0.83941 1.90800 1.49860 1.21490 1.83872 1.45550 1.71211 1.12039 1.06515 1.21375 1.00910 0.97126 0.79134 1.21835 1.00733 0.94729 0.92999 0.87682 1.22147 0.96293 0.99770 0.96451 1.22896 0.98729 1.00003 0.96310 1.21465 0.91996 0.95570 0.85452 0.92870 1.42615 1.67114 1.06217 1.21613 1.19637 1.27771 0.90238 0.99136 0.90603 1.25577 1.02826 0.97845 1.01038 1.69824 1.48120 1.15125 1.29220 0.85156 0.78160 0.78399 0.78167 1.21616 1.22362 1.19256 1.22461 1.00204 0.98070 0.94632 0.91249 0.94472 0.89126 0.89371 0.85503 0.77551 0.81342 0.74662 0.92901 0.91580 0.89521 0.91625 0.93235 0.94378 0.79720 0.94163 0.92639 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 10.16 71.98 0.73 -1.43 16 2 C 0.10 1.24 6.11 86.38 0.53 1.77 16 3 N -0.40 -6.33 2.77 -510.89 -1.41 -7.74 16 4 C 0.05 0.58 11.34 83.48 0.95 1.53 16 5 C -0.14 -2.11 6.66 22.04 0.15 -1.96 16 6 Cl -0.05 -0.68 29.30 -2.72 -0.08 -0.76 16 7 C -0.12 -1.92 10.34 22.59 0.23 -1.69 16 8 C -0.06 -1.13 6.88 40.35 0.28 -0.86 16 9 C 0.58 13.37 7.77 86.44 0.67 14.04 16 10 O -0.58 -16.99 14.26 -4.35 -0.06 -17.05 16 11 N -0.70 -13.24 5.27 -467.08 -2.46 -15.70 16 12 C 0.14 3.09 4.71 86.38 0.41 3.50 16 13 C -0.08 -1.82 2.98 -10.07 -0.03 -1.85 16 14 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 15 C -0.11 -2.49 6.13 31.32 0.19 -2.30 16 16 C -0.14 -4.69 6.51 31.67 0.21 -4.48 16 17 C 0.16 6.24 3.53 46.28 0.16 6.40 16 18 H 0.05 2.03 8.12 -2.39 -0.02 2.01 16 19 N -0.74 -37.32 5.26 -316.87 -1.67 -38.99 16 20 C -0.24 -13.15 9.98 84.03 0.84 -12.31 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 22 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 23 N -0.97 -60.36 13.06 21.65 0.28 -60.08 16 24 Si 0.97 46.55 29.55 68.60 2.03 48.57 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 C -0.11 -3.47 5.97 31.67 0.19 -3.28 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.75 7.59 -2.39 -0.02 0.73 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.55 6.73 -2.39 -0.02 1.53 16 33 H 0.13 0.72 8.11 -2.39 -0.02 0.70 16 34 H 0.21 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.17 1.90 7.49 -2.91 -0.02 1.88 16 36 H 0.42 5.54 7.26 -92.71 -0.67 4.86 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.07 1.46 7.58 -2.39 -0.02 1.44 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.37 20.37 7.73 -92.71 -0.72 19.66 16 44 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 45 H 0.05 1.84 7.74 -2.39 -0.02 1.82 16 46 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -71.85 391.18 2.21 -69.65 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.39 Total: 29.25 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 5.97 Total: -7.16 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -5.26 Total: -122.50 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.06 Total: -17.05 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -71.85 2.21 -69.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086877458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.930 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds