Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 S 1.81397 * 109.46686 * 180.02562 * 3 2 1 5 5 C 1.81400 * 102.99983 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47409 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99887 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00040 * 180.02562 * 6 5 4 9 9 C 1.47066 * 136.05579 * 180.02562 * 8 6 5 10 10 C 1.53504 * 88.04678 * 207.05024 * 9 8 6 11 11 N 1.46499 * 114.20382 * 220.37387 * 10 9 8 12 12 C 1.35316 * 125.86841 * 84.71602 * 11 10 9 13 13 C 1.35353 * 106.17181 * 179.90219 * 12 11 10 14 14 C 1.50700 * 126.74884 * 180.12613 * 13 12 11 15 15 N 1.46504 * 109.47174 * 95.24274 * 14 13 12 16 16 C 1.36933 * 120.00208 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99671 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00064 * 180.02562 * 16 15 14 19 19 N 1.31611 * 120.00131 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99777 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47255 * 60.00182 * 20 18 16 22 22 H 1.48504 * 109.46886 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47055 * 299.99930 * 20 18 16 24 24 N 1.33768 * 106.49641 * 0.35251 * 13 12 11 25 25 N 1.28630 * 108.88712 * 359.77204 * 24 13 12 26 26 C 1.47064 * 136.05760 * 359.93929 * 8 6 5 27 27 H 1.09008 * 109.47008 * 300.00105 * 1 2 3 28 28 H 1.09003 * 109.47449 * 59.99266 * 1 2 3 29 29 H 1.08999 * 109.47357 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46433 * 240.00100 * 2 1 3 31 31 H 1.08998 * 109.47041 * 119.99927 * 2 1 3 32 32 H 1.08994 * 109.47131 * 60.00030 * 3 2 1 33 33 H 1.08998 * 109.47120 * 299.99879 * 3 2 1 34 34 H 1.08999 * 109.47194 * 59.99702 * 5 4 3 35 35 H 1.09004 * 109.47170 * 299.99803 * 5 4 3 36 36 H 1.09002 * 113.46793 * 321.85996 * 9 8 6 37 37 H 1.08999 * 113.46805 * 92.24363 * 9 8 6 38 38 H 1.09002 * 114.20460 * 87.54848 * 10 9 8 39 39 H 1.07997 * 126.91482 * 0.02562 * 12 11 10 40 40 H 1.08996 * 109.47190 * 215.24593 * 14 13 12 41 41 H 1.08998 * 109.47264 * 335.24837 * 14 13 12 42 42 H 0.97003 * 119.99825 * 0.02562 * 15 14 13 43 43 H 0.97001 * 120.00186 * 180.02562 * 19 18 16 44 44 H 1.08999 * 113.47096 * 267.69948 * 26 8 6 45 45 H 1.09005 * 113.46966 * 38.08340 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4424 -0.0008 5 6 4.2622 3.2099 0.0001 6 6 5.7596 3.3797 -0.0010 7 8 6.4804 2.4044 -0.0019 8 7 6.2976 4.6154 -0.0001 9 6 7.6561 5.1788 -0.0012 10 6 7.0853 6.4199 0.6989 11 7 7.6380 7.6884 0.2177 12 6 7.2048 8.3845 -0.8587 13 6 7.9889 9.4851 -0.9365 14 6 7.9042 10.5816 -1.9668 15 7 7.0907 11.6818 -1.4433 16 6 6.8731 12.7966 -2.2082 17 1 7.3008 12.8645 -3.1976 18 6 6.1027 13.8393 -1.7119 19 7 5.5820 13.7567 -0.5060 20 14 5.8053 15.3596 -2.7557 21 1 5.1156 14.9705 -4.0120 22 1 4.9575 16.3188 -2.0029 23 1 7.1056 15.9981 -3.0822 24 7 8.8570 9.4054 0.0781 25 7 8.6227 8.3296 0.7431 26 6 5.7847 5.9937 0.0008 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.8436 3.6790 0.8905 35 1 3.8429 3.6801 -0.8895 36 1 8.3591 4.6179 0.6147 37 1 8.0407 5.3826 -1.0005 38 1 7.0545 6.3454 1.7859 39 1 6.3950 8.1169 -1.5213 40 1 8.9062 10.9461 -2.1927 41 1 7.4460 10.1916 -2.8756 42 1 6.7069 11.6210 -0.5545 43 1 5.0434 14.4852 -0.1594 44 1 5.6710 6.4153 -0.9979 45 1 4.8957 6.1256 0.6176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105174242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = 97.922838 kcal Electronic energy + Delta-G solvation = -25464.597998 eV Core-core repulsion = 21646.980088 eV Total energy + Delta-G solvation = -3817.617911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.33220 -41.62566 -39.31138 -36.78307 -35.56366 -34.84528 -33.59226 -32.08048 -31.61766 -29.48803 -28.13796 -27.79982 -27.15065 -25.09259 -24.70540 -22.67445 -22.36597 -21.86997 -20.25796 -19.38743 -18.79288 -18.25734 -17.79313 -17.29398 -16.78436 -16.61653 -16.42433 -16.24259 -16.00004 -15.57095 -15.34146 -15.04920 -14.77706 -14.47216 -14.33120 -14.30865 -14.21845 -13.85300 -13.79278 -13.37132 -13.24451 -13.01901 -12.71314 -12.56923 -12.40653 -12.37724 -12.10968 -12.09432 -11.89040 -11.79447 -11.72487 -11.31585 -11.03677 -10.91560 -10.90807 -10.22831 -10.10223 -8.98282 -8.73971 -7.90405 -5.20180 0.32932 0.57286 1.05429 1.29266 1.47088 1.53819 1.55110 1.56073 1.62021 1.83491 2.61872 2.67749 2.98256 3.36279 3.43294 3.52721 3.68588 3.88882 3.94352 3.95957 4.00270 4.09598 4.16294 4.20224 4.26638 4.34771 4.37090 4.38907 4.47860 4.52624 4.56131 4.65566 4.68710 4.84142 4.89708 5.14805 5.15784 5.19396 5.20599 5.38401 5.54432 5.63779 6.28333 6.29427 6.78009 7.36805 7.51756 8.08549 8.33997 9.33081 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.001824 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.832297 B =15350.150003 C =16993.603905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C -0.086 4.086 4 S -0.262 6.262 5 C -0.105 4.105 6 C 0.565 3.435 7 O -0.560 6.560 8 N -0.639 5.639 9 C 0.101 3.899 10 C 0.104 3.896 11 N -0.275 5.275 12 C -0.015 4.015 13 C -0.036 4.036 14 C 0.234 3.766 15 N -0.738 5.738 16 C -0.244 4.244 17 H 0.084 0.916 18 C -0.075 4.075 19 N -0.971 5.971 20 Si 0.976 3.024 21 H -0.272 1.272 22 H -0.299 1.299 23 H -0.281 1.281 24 N -0.297 5.297 25 N -0.108 5.108 26 C 0.104 3.896 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.163 0.837 39 H 0.233 0.767 40 H 0.026 0.974 41 H 0.066 0.934 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.123 0.877 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.860 -28.024 0.543 30.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.234 4.234 4 S -0.035 6.035 5 C -0.256 4.256 6 C 0.354 3.646 7 O -0.437 6.437 8 N -0.376 5.376 9 C -0.024 4.024 10 C 0.002 3.998 11 N -0.069 5.069 12 C -0.166 4.166 13 C -0.174 4.174 14 C 0.106 3.894 15 N -0.381 5.381 16 C -0.376 4.376 17 H 0.102 0.898 18 C -0.267 4.267 19 N -0.622 5.622 20 Si 0.805 3.195 21 H -0.198 1.198 22 H -0.225 1.225 23 H -0.207 1.207 24 N -0.163 5.163 25 N -0.086 5.086 26 C -0.019 4.019 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.181 0.819 39 H 0.250 0.750 40 H 0.044 0.956 41 H 0.084 0.916 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.141 0.859 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.791 -29.544 1.534 30.863 hybrid contribution -1.395 1.992 -0.686 2.527 sum -10.187 -27.552 0.849 29.387 Atomic orbital electron populations 1.21743 0.93294 1.02668 1.02614 1.21244 0.97017 0.93642 1.02825 1.23595 0.91269 1.02212 1.06293 1.87896 1.09082 1.08240 1.98314 1.23373 0.94062 0.98184 1.09963 1.19651 0.89925 0.80116 0.74867 1.90788 1.63502 1.38553 1.50869 1.49034 1.10068 1.04761 1.73696 1.23412 0.86914 0.89996 1.02047 1.23749 0.96373 0.77062 1.02615 1.47254 1.22323 1.18164 1.19153 1.23784 1.04209 0.93942 0.94628 1.22300 0.96977 0.98950 0.99175 1.18988 0.94667 0.84102 0.91610 1.42486 1.60503 1.16975 1.18127 1.19652 1.24840 0.94873 0.98195 0.89848 1.25588 1.01264 1.01824 0.98066 1.69832 1.40038 1.33927 1.18365 0.85172 0.77466 0.79012 0.77836 1.19754 1.22502 1.20722 1.75067 1.23670 1.11198 1.06411 1.78219 1.06117 1.02754 1.21549 1.23706 0.96817 0.77684 1.03655 0.91935 0.91950 0.91756 0.91692 0.91657 0.88640 0.88699 0.84188 0.84370 0.88849 0.88205 0.81916 0.75027 0.95582 0.91643 0.79715 0.94110 0.85879 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.91 71.98 0.71 -0.10 16 2 C -0.11 -0.94 5.94 30.60 0.18 -0.76 16 3 C -0.09 -0.71 5.94 71.98 0.43 -0.29 16 4 S -0.26 -4.16 20.87 -56.49 -1.18 -5.34 16 5 C -0.11 -1.04 6.25 71.24 0.45 -0.59 16 6 C 0.56 9.49 8.10 87.66 0.71 10.20 16 7 O -0.56 -15.21 16.64 -3.03 -0.05 -15.26 16 8 N -0.64 -7.55 3.69 -857.64 -3.17 -10.71 16 9 C 0.10 1.31 8.42 83.18 0.70 2.01 16 10 C 0.10 1.27 5.34 45.50 0.24 1.51 16 11 N -0.27 -6.06 3.56 -326.21 -1.16 -7.22 16 12 C -0.01 -0.34 10.72 83.49 0.89 0.56 16 13 C -0.04 -1.23 6.62 41.60 0.28 -0.96 16 14 C 0.23 9.19 6.82 85.63 0.58 9.77 16 15 N -0.74 -37.17 5.59 -347.18 -1.94 -39.11 16 16 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 17 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 18 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 19 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 20 Si 0.98 45.19 29.55 68.60 2.03 47.21 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 N -0.30 -11.49 12.41 -48.60 -0.60 -12.09 16 25 N -0.11 -3.47 13.16 37.02 0.49 -2.98 16 26 C 0.10 0.62 7.77 83.23 0.65 1.27 16 27 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 28 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.14 0.68 8.14 -2.39 -0.02 0.67 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.23 3.12 6.78 -2.91 -0.02 3.10 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.37 20.46 7.66 -92.71 -0.71 19.75 16 43 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.12 0.40 6.38 -2.39 -0.02 0.38 16 45 H 0.13 0.08 8.14 -2.38 -0.02 0.06 16 Total: -1.00 -82.87 396.26 2.12 -80.75 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.29 Total: 17.19 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 7.13 Total: 6.36 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -6.10 Total: -130.91 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.05 Total: -15.26 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -1.18 Total: -5.34 kcal Total: -82.87 2.12 -80.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105174242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.672 kcal (2) G-P(sol) polarization free energy of solvation -82.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds