Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 103.00117 * 2 1 4 4 H 1.09001 * 109.47029 * 305.00331 * 3 2 1 5 5 C 1.53005 * 109.46977 * 65.00051 * 3 2 1 6 6 C 1.52998 * 109.47082 * 185.00143 * 3 2 1 7 7 C 1.50691 * 109.47189 * 64.99954 * 6 3 2 8 8 O 1.21285 * 120.00492 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00004 * 179.97438 * 7 6 3 10 10 C 1.47063 * 136.05552 * 359.63361 * 9 7 6 11 11 C 1.53764 * 87.88890 * 152.96153 * 10 9 7 12 12 N 1.46501 * 114.26520 * 139.79125 * 11 10 9 13 13 C 1.35309 * 125.87094 * 351.18800 * 12 11 10 14 14 C 1.35352 * 106.17191 * 179.90625 * 13 12 11 15 15 C 1.50703 * 126.74766 * 180.12839 * 14 13 12 16 16 N 1.46499 * 109.47345 * 95.24601 * 15 14 13 17 17 C 1.36931 * 120.00083 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00345 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00151 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99720 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00207 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47135 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47063 * 120.00203 * 21 19 17 24 24 H 1.48501 * 109.47022 * 240.00155 * 21 19 17 25 25 N 1.33768 * 106.49878 * 0.35690 * 14 13 12 26 26 N 1.28637 * 108.88749 * 359.77214 * 25 14 13 27 27 C 1.47066 * 136.05937 * 179.97438 * 9 7 6 28 28 H 1.09002 * 109.47124 * 299.99830 * 1 2 3 29 29 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47147 * 59.99914 * 1 2 3 31 31 H 1.08996 * 109.47112 * 59.99537 * 5 3 2 32 32 H 1.08995 * 109.46998 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.46892 * 300.00004 * 5 3 2 34 34 H 1.09003 * 109.46866 * 185.00138 * 6 3 2 35 35 H 1.09001 * 109.46669 * 304.99784 * 6 3 2 36 36 H 1.09003 * 113.46845 * 267.69127 * 10 9 7 37 37 H 1.09000 * 113.47126 * 38.13615 * 10 9 7 38 38 H 1.08999 * 114.39197 * 272.67790 * 11 10 9 39 39 H 1.08000 * 126.91546 * 0.02562 * 13 12 11 40 40 H 1.09001 * 109.47074 * 215.24613 * 15 14 13 41 41 H 1.08998 * 109.47319 * 335.24227 * 15 14 13 42 42 H 0.96999 * 119.99822 * 0.02562 * 16 15 14 43 43 H 0.97000 * 119.99404 * 179.97438 * 20 19 17 44 44 H 1.09002 * 113.46759 * 321.87458 * 27 9 7 45 45 H 1.09008 * 113.46444 * 92.24679 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7429 2.4016 1.3074 6 6 3.7370 1.9411 -0.1258 7 6 4.1919 1.4269 -1.4672 8 8 3.3840 0.9673 -2.2463 9 7 5.4965 1.4788 -1.8017 10 6 6.7351 1.9502 -1.1643 11 6 7.4973 0.9200 -2.0141 12 7 8.7717 1.4056 -2.5491 13 6 9.2184 2.6818 -2.4979 14 6 10.4289 2.6821 -3.1033 15 6 11.3384 3.8676 -3.3000 16 7 12.3210 3.9147 -2.2144 17 6 13.2584 4.9124 -2.1822 18 1 13.2731 5.6648 -2.9569 19 6 14.1898 4.9567 -1.1540 20 7 14.1723 4.0394 -0.2101 21 14 15.4682 6.3181 -1.1096 22 1 15.2757 7.2160 -2.2766 23 1 15.3179 7.0975 0.1454 24 1 16.8275 5.7226 -1.1628 25 7 10.6571 1.4243 -3.4971 26 7 9.6564 0.6925 -3.1539 27 6 6.3070 1.0944 -2.9671 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.2354 1.9149 2.1492 32 1 1.9885 3.4635 1.3076 33 1 0.6636 2.2778 1.3969 34 1 3.9903 2.9976 -0.0366 35 1 4.2339 1.3803 0.6659 36 1 6.9832 2.9831 -1.4087 37 1 6.7767 1.7481 -0.0940 38 1 7.5681 -0.0704 -1.5644 39 1 8.7118 3.5293 -2.0602 40 1 11.8559 3.7741 -4.2547 41 1 10.7476 4.7836 -3.2952 42 1 12.3081 3.2387 -1.5189 43 1 14.8234 4.0702 0.5082 44 1 5.9837 0.1633 -3.4326 45 1 6.4412 1.9012 -3.6877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105215914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = 127.281758 kcal Electronic energy + Delta-G solvation = -26038.370161 eV Core-core repulsion = 22222.025348 eV Total energy + Delta-G solvation = -3816.344812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.15384 -40.87805 -38.64850 -35.07404 -35.01941 -33.56066 -31.87704 -30.41589 -29.96528 -29.30241 -27.90703 -26.74812 -25.83512 -24.20944 -22.84585 -22.47236 -21.14745 -20.72268 -19.48966 -18.05099 -17.53468 -17.16751 -17.06081 -16.47479 -16.08841 -15.69956 -15.07550 -14.76147 -14.59124 -14.48669 -14.17670 -14.07039 -13.75081 -13.70080 -13.33443 -13.20090 -13.11986 -13.05495 -12.65899 -12.65328 -12.48840 -11.97001 -11.94316 -11.78604 -11.67290 -11.26883 -10.92372 -10.84069 -10.58246 -10.31540 -10.17127 -10.07607 -9.93360 -9.75449 -9.34779 -8.93085 -8.88553 -7.87114 -6.93507 -5.75699 -3.05381 1.28675 1.69349 1.84090 2.12504 2.19114 2.62541 2.85049 3.38795 3.44355 3.50226 3.52449 3.66074 4.01586 4.10839 4.29725 4.46112 4.60238 4.60393 4.64849 4.71619 4.73493 4.76433 4.79801 4.86738 4.97327 5.02191 5.06547 5.14429 5.19836 5.25594 5.28965 5.36668 5.43502 5.56907 5.59937 5.75861 6.14999 6.34842 6.61249 6.66372 6.74794 7.07466 7.64861 7.70353 8.41521 8.77024 9.53567 10.08847 10.44729 11.47047 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.001854 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.640469 B =15101.821205 C =16008.460087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.241 6.241 3 C -0.046 4.046 4 H 0.094 0.906 5 C -0.149 4.149 6 C -0.118 4.118 7 C 0.546 3.454 8 O -0.507 6.507 9 N -0.647 5.647 10 C 0.096 3.904 11 C 0.112 3.888 12 N -0.292 5.292 13 C -0.047 4.047 14 C 0.000 4.000 15 C 0.232 3.768 16 N -0.726 5.726 17 C -0.240 4.240 18 H 0.074 0.926 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.279 1.279 23 H -0.292 1.292 24 H -0.291 1.291 25 N -0.250 5.250 26 N -0.089 5.089 27 C 0.101 3.899 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.149 0.851 39 H 0.189 0.811 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.097 0.903 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.765 -4.445 2.902 30.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.015 6.015 3 C -0.175 4.175 4 H 0.113 0.887 5 C -0.208 4.208 6 C -0.158 4.158 7 C 0.335 3.665 8 O -0.380 6.380 9 N -0.385 5.385 10 C -0.029 4.029 11 C 0.007 3.993 12 N -0.087 5.087 13 C -0.196 4.196 14 C -0.138 4.138 15 C 0.103 3.897 16 N -0.371 5.371 17 C -0.371 4.371 18 H 0.092 0.908 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 N -0.118 5.118 26 N -0.067 5.067 27 C -0.023 4.023 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.166 0.834 39 H 0.206 0.794 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.115 0.885 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -29.353 -6.861 1.981 30.209 hybrid contribution -0.419 2.556 0.813 2.715 sum -29.772 -4.305 2.793 30.211 Atomic orbital electron populations 1.23386 0.94648 1.06391 1.04706 1.86970 1.06963 1.09789 1.97749 1.22900 0.97325 0.95509 1.01808 0.88725 1.22111 1.01727 1.01064 0.95869 1.21487 0.94797 1.03956 0.95589 1.20077 0.78858 0.78437 0.89118 1.90805 1.50615 1.44349 1.52198 1.49254 1.05393 1.63592 1.20282 1.23480 0.80473 0.98918 0.99984 1.23410 0.78268 1.00911 0.96661 1.47008 1.15452 1.06957 1.39257 1.23318 0.98909 0.88844 1.08561 1.22490 0.95030 0.95210 1.01051 1.18966 0.88685 0.88537 0.93552 1.42306 1.34521 1.33236 1.26996 1.19275 1.06851 1.03778 1.07152 0.90812 1.24762 0.99668 0.98888 0.97611 1.69694 1.38282 1.35592 1.14422 0.86089 0.81533 0.81177 0.77200 1.20462 1.21933 1.21850 1.75134 1.15747 1.02402 1.18474 1.78323 0.95494 1.20795 1.12117 1.23349 0.85602 1.02778 0.90537 0.90671 0.88204 0.90522 0.91012 0.91361 0.92039 0.87169 0.87655 0.87859 0.88019 0.83356 0.79432 0.94243 0.94427 0.78087 0.93559 0.88488 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.45 101.05 1.06 0.33 16 2 S -0.24 -2.10 20.24 -107.50 -2.18 -4.28 16 3 C -0.05 -0.30 2.44 -26.73 -0.07 -0.37 16 4 H 0.09 0.70 7.95 -51.92 -0.41 0.29 16 5 C -0.15 -0.64 9.10 37.16 0.34 -0.30 16 6 C -0.12 -0.69 5.00 -27.89 -0.14 -0.83 16 7 C 0.55 4.95 7.79 -10.99 -0.09 4.86 16 8 O -0.51 -6.48 15.57 5.55 0.09 -6.40 16 9 N -0.65 -4.96 3.69 -185.09 -0.68 -5.65 16 10 C 0.10 0.56 7.77 -8.37 -0.07 0.49 16 11 C 0.11 0.91 5.34 -67.68 -0.36 0.55 16 12 N -0.29 -3.70 3.56 -54.45 -0.19 -3.89 16 13 C -0.05 -0.63 10.72 -17.05 -0.18 -0.81 16 14 C 0.00 0.00 6.62 -82.78 -0.55 -0.55 16 15 C 0.23 4.69 6.82 -5.19 -0.04 4.65 16 16 N -0.73 -18.49 5.59 -61.09 -0.34 -18.83 16 17 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 18 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 21 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 N -0.25 -4.91 12.41 33.29 0.41 -4.49 16 26 N -0.09 -1.49 13.17 60.35 0.79 -0.70 16 27 C 0.10 0.81 8.42 -8.52 -0.07 0.74 16 28 H 0.07 0.33 7.14 -51.92 -0.37 -0.04 16 29 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.25 6.92 -51.93 -0.36 -0.11 16 34 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.51 6.40 -51.93 -0.33 0.18 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.15 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.19 1.83 6.78 -52.49 -0.36 1.47 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.39 10.60 7.66 -40.82 -0.31 10.29 16 43 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -36.56 390.82 -7.68 -44.24 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.76 Total: 2.94 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.41 Total: 1.51 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.71 Total: -61.08 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: 0.09 Total: -6.40 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.18 Total: -4.28 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.56 -7.68 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105215914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.524 kcal (2) G-P(sol) polarization free energy of solvation -36.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds