Wall clock time and date at job start Sat Apr 11 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 103.00117 * 2 1 4 4 H 1.09001 * 109.47029 * 305.00331 * 3 2 1 5 5 C 1.53005 * 109.46977 * 65.00051 * 3 2 1 6 6 C 1.52998 * 109.47082 * 185.00143 * 3 2 1 7 7 C 1.50691 * 109.47189 * 64.99954 * 6 3 2 8 8 O 1.21285 * 120.00492 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00004 * 179.97438 * 7 6 3 10 10 C 1.47063 * 136.05552 * 359.63361 * 9 7 6 11 11 C 1.53764 * 87.88890 * 152.96153 * 10 9 7 12 12 N 1.46501 * 114.26520 * 139.79125 * 11 10 9 13 13 C 1.35309 * 125.87094 * 351.18800 * 12 11 10 14 14 C 1.35352 * 106.17191 * 179.90625 * 13 12 11 15 15 C 1.50703 * 126.74766 * 180.12839 * 14 13 12 16 16 N 1.46499 * 109.47345 * 95.24601 * 15 14 13 17 17 C 1.36931 * 120.00083 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00345 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00151 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99720 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00207 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47135 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47063 * 120.00203 * 21 19 17 24 24 H 1.48501 * 109.47022 * 240.00155 * 21 19 17 25 25 N 1.33768 * 106.49878 * 0.35690 * 14 13 12 26 26 N 1.28637 * 108.88749 * 359.77214 * 25 14 13 27 27 C 1.47066 * 136.05937 * 179.97438 * 9 7 6 28 28 H 1.09002 * 109.47124 * 299.99830 * 1 2 3 29 29 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47147 * 59.99914 * 1 2 3 31 31 H 1.08996 * 109.47112 * 59.99537 * 5 3 2 32 32 H 1.08995 * 109.46998 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.46892 * 300.00004 * 5 3 2 34 34 H 1.09003 * 109.46866 * 185.00138 * 6 3 2 35 35 H 1.09001 * 109.46669 * 304.99784 * 6 3 2 36 36 H 1.09003 * 113.46845 * 267.69127 * 10 9 7 37 37 H 1.09000 * 113.47126 * 38.13615 * 10 9 7 38 38 H 1.08999 * 114.39197 * 272.67790 * 11 10 9 39 39 H 1.08000 * 126.91546 * 0.02562 * 13 12 11 40 40 H 1.09001 * 109.47074 * 215.24613 * 15 14 13 41 41 H 1.08998 * 109.47319 * 335.24227 * 15 14 13 42 42 H 0.96999 * 119.99822 * 0.02562 * 16 15 14 43 43 H 0.97000 * 119.99404 * 179.97438 * 20 19 17 44 44 H 1.09002 * 113.46759 * 321.87458 * 27 9 7 45 45 H 1.09008 * 113.46444 * 92.24679 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7429 2.4016 1.3074 6 6 3.7370 1.9411 -0.1258 7 6 4.1919 1.4269 -1.4672 8 8 3.3840 0.9673 -2.2463 9 7 5.4965 1.4788 -1.8017 10 6 6.7351 1.9502 -1.1643 11 6 7.4973 0.9200 -2.0141 12 7 8.7717 1.4056 -2.5491 13 6 9.2184 2.6818 -2.4979 14 6 10.4289 2.6821 -3.1033 15 6 11.3384 3.8676 -3.3000 16 7 12.3210 3.9147 -2.2144 17 6 13.2584 4.9124 -2.1822 18 1 13.2731 5.6648 -2.9569 19 6 14.1898 4.9567 -1.1540 20 7 14.1723 4.0394 -0.2101 21 14 15.4682 6.3181 -1.1096 22 1 15.2757 7.2160 -2.2766 23 1 15.3179 7.0975 0.1454 24 1 16.8275 5.7226 -1.1628 25 7 10.6571 1.4243 -3.4971 26 7 9.6564 0.6925 -3.1539 27 6 6.3070 1.0944 -2.9671 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.2354 1.9149 2.1492 32 1 1.9885 3.4635 1.3076 33 1 0.6636 2.2778 1.3969 34 1 3.9903 2.9976 -0.0366 35 1 4.2339 1.3803 0.6659 36 1 6.9832 2.9831 -1.4087 37 1 6.7767 1.7481 -0.0940 38 1 7.5681 -0.0704 -1.5644 39 1 8.7118 3.5293 -2.0602 40 1 11.8559 3.7741 -4.2547 41 1 10.7476 4.7836 -3.2952 42 1 12.3081 3.2387 -1.5189 43 1 14.8234 4.0702 0.5082 44 1 5.9837 0.1633 -3.4326 45 1 6.4412 1.9012 -3.6877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105215914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:57 Heat of formation + Delta-G solvation = 101.138332 kcal Electronic energy + Delta-G solvation = -26039.503825 eV Core-core repulsion = 22222.025348 eV Total energy + Delta-G solvation = -3817.478476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.31320 -41.56347 -39.36238 -36.77747 -35.55123 -34.79107 -33.56380 -31.60804 -31.08258 -29.83817 -28.41798 -27.77722 -27.07738 -25.12749 -24.70344 -23.02842 -22.31596 -21.77008 -20.10541 -19.37256 -18.72661 -18.15295 -17.68945 -17.28144 -17.01513 -16.57165 -16.39501 -16.01460 -15.66793 -15.24009 -15.12730 -15.01311 -14.82141 -14.57368 -14.29117 -14.20799 -13.93231 -13.81802 -13.59558 -13.35609 -13.17618 -13.00755 -12.90116 -12.78316 -12.54096 -12.39562 -12.31279 -12.19195 -12.00694 -11.88158 -11.76955 -11.08834 -10.98421 -10.93238 -10.72503 -10.20784 -9.97574 -8.97805 -8.50861 -7.90240 -5.19969 0.58691 0.78371 1.04980 1.47964 1.49071 1.53241 1.55203 1.64358 1.67943 1.89721 2.62221 2.72657 3.07953 3.39886 3.45579 3.54828 3.60276 3.72214 3.95903 4.02449 4.17384 4.19006 4.24063 4.27289 4.30088 4.32697 4.37879 4.41953 4.50487 4.56105 4.58138 4.62920 4.69069 4.77343 4.86720 4.90532 4.98489 5.16029 5.21708 5.26724 5.55383 5.65471 6.29969 6.46439 7.00433 7.37120 7.52996 8.08841 8.34238 9.33760 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.001854 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.640469 B =15101.821205 C =16008.460087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.312 6.312 3 C -0.033 4.033 4 H 0.081 0.919 5 C -0.143 4.143 6 C -0.113 4.113 7 C 0.541 3.459 8 O -0.553 6.553 9 N -0.645 5.645 10 C 0.107 3.893 11 C 0.102 3.898 12 N -0.274 5.274 13 C -0.014 4.014 14 C -0.036 4.036 15 C 0.234 3.766 16 N -0.738 5.738 17 C -0.240 4.240 18 H 0.085 0.915 19 C -0.077 4.077 20 N -0.972 5.972 21 Si 0.976 3.024 22 H -0.262 1.262 23 H -0.291 1.291 24 H -0.299 1.299 25 N -0.297 5.297 26 N -0.110 5.110 27 C 0.100 3.900 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.142 0.858 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.158 0.842 39 H 0.234 0.766 40 H 0.027 0.973 41 H 0.067 0.933 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.087 0.913 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.287 -2.346 4.078 31.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.087 6.087 3 C -0.162 4.162 4 H 0.100 0.900 5 C -0.202 4.202 6 C -0.153 4.153 7 C 0.332 3.668 8 O -0.429 6.429 9 N -0.382 5.382 10 C -0.017 4.017 11 C -0.001 4.001 12 N -0.068 5.068 13 C -0.165 4.165 14 C -0.175 4.175 15 C 0.107 3.893 16 N -0.381 5.381 17 C -0.372 4.372 18 H 0.102 0.898 19 C -0.269 4.269 20 N -0.623 5.623 21 Si 0.805 3.195 22 H -0.186 1.186 23 H -0.218 1.218 24 H -0.227 1.227 25 N -0.164 5.164 26 N -0.089 5.089 27 C -0.025 4.025 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.159 0.841 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.175 0.825 39 H 0.250 0.750 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -30.901 -4.763 3.123 31.421 hybrid contribution -0.094 1.847 0.375 1.887 sum -30.995 -2.916 3.498 31.327 Atomic orbital electron populations 1.23376 0.91953 1.06956 1.05445 1.87154 1.10232 1.13393 1.97892 1.22922 0.97845 0.92932 1.02536 0.90025 1.22077 1.01825 1.01801 0.94454 1.21593 0.94228 1.05737 0.93722 1.20701 0.78657 0.77626 0.89799 1.90788 1.51914 1.46464 1.53782 1.49246 1.05596 1.63171 1.20200 1.23651 0.78128 0.98855 1.01026 1.23819 0.76252 1.02510 0.97470 1.47284 1.15737 1.06516 1.37308 1.23789 0.97131 0.89939 1.05683 1.22311 0.96818 0.94362 1.03976 1.18991 0.88304 0.90849 0.91196 1.42509 1.35396 1.32324 1.27888 1.19729 1.06780 1.03946 1.06745 0.89757 1.25602 1.02129 1.01458 0.97736 1.69856 1.39327 1.37784 1.15295 0.85027 0.78275 0.78556 0.77593 1.18619 1.21846 1.22685 1.75062 1.17566 1.03511 1.20253 1.78224 0.96027 1.21201 1.13401 1.23325 0.85603 1.02617 0.90918 0.88970 0.87801 0.90641 0.90766 0.89588 0.91892 0.84075 0.86311 0.85940 0.85203 0.82466 0.75009 0.95544 0.91572 0.79735 0.94133 0.89412 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.45 113.37 1.19 -0.02 16 2 S -0.31 -5.34 20.24 -56.49 -1.14 -6.48 16 3 C -0.03 -0.38 2.44 30.60 0.07 -0.30 16 4 H 0.08 1.13 7.95 -2.39 -0.02 1.11 16 5 C -0.14 -0.85 9.10 71.98 0.66 -0.19 16 6 C -0.11 -0.99 5.00 29.84 0.15 -0.84 16 7 C 0.54 8.87 7.79 87.65 0.68 9.55 16 8 O -0.55 -14.07 15.57 -3.04 -0.05 -14.12 16 9 N -0.65 -8.26 3.69 -857.89 -3.16 -11.42 16 10 C 0.11 0.79 7.77 83.27 0.65 1.44 16 11 C 0.10 1.42 5.34 45.55 0.24 1.66 16 12 N -0.27 -6.41 3.56 -326.17 -1.16 -7.57 16 13 C -0.01 -0.35 10.72 83.49 0.90 0.55 16 14 C -0.04 -1.28 6.62 41.60 0.28 -1.00 16 15 C 0.23 9.29 6.82 85.63 0.58 9.88 16 16 N -0.74 -37.48 5.59 -347.18 -1.94 -39.42 16 17 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 19 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 20 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16 21 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 N -0.30 -11.77 12.41 -48.60 -0.60 -12.37 16 26 N -0.11 -3.67 13.17 37.02 0.49 -3.18 16 27 C 0.10 1.44 8.42 83.17 0.70 2.14 16 28 H 0.09 0.68 7.14 -2.39 -0.02 0.66 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.06 0.37 6.92 -2.38 -0.02 0.35 16 34 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.12 0.52 6.40 -2.39 -0.02 0.51 16 37 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.16 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.23 3.31 6.78 -2.91 -0.02 3.29 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.37 20.66 7.66 -92.71 -0.71 19.95 16 43 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -82.74 390.82 2.43 -80.31 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.30 Total: 19.44 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 7.40 Total: 6.59 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -6.10 Total: -133.25 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.05 Total: -14.12 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -1.14 Total: -6.48 kcal Total: -82.74 2.43 -80.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105215914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.446 kcal (2) G-P(sol) polarization free energy of solvation -82.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds