Wall clock time and date at job start Sat Apr 11 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47064 * 2 1 4 4 S 1.81395 * 109.47129 * 120.00397 * 2 1 3 5 5 C 1.81397 * 102.99960 * 175.00069 * 4 2 1 6 6 C 1.50703 * 109.47475 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99488 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00290 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 5 10 10 C 1.50700 * 109.46769 * 179.72341 * 9 8 6 11 11 C 1.35352 * 126.75361 * 94.71485 * 10 9 8 12 12 N 1.35317 * 106.17693 * 179.84844 * 11 10 9 13 13 C 1.46491 * 125.87029 * 180.18381 * 12 11 10 14 14 C 1.53947 * 113.74330 * 14.03356 * 13 12 11 15 15 N 1.47807 * 86.03671 * 222.08595 * 14 13 12 16 16 C 1.36935 * 134.45249 * 204.64331 * 15 14 13 17 17 H 1.08003 * 120.00142 * 179.86840 * 16 15 14 18 18 C 1.38809 * 120.00476 * 359.86834 * 16 15 14 19 19 N 1.31625 * 119.99820 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00334 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46957 * 90.00147 * 20 18 16 22 22 H 1.48500 * 109.47111 * 209.99709 * 20 18 16 23 23 H 1.48494 * 109.46926 * 329.99957 * 20 18 16 24 24 C 1.47576 * 91.05211 * 24.54811 * 15 14 13 25 25 N 1.28721 * 108.25949 * 0.41126 * 12 11 10 26 26 N 1.28636 * 110.17920 * 359.73997 * 25 12 11 27 27 H 1.09001 * 109.47262 * 299.99681 * 1 2 3 28 28 H 1.09000 * 109.47339 * 59.99932 * 1 2 3 29 29 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46816 * 240.00612 * 2 1 3 31 31 H 1.08997 * 109.47236 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47098 * 300.00216 * 3 2 1 33 33 H 1.09001 * 109.46820 * 60.00048 * 3 2 1 34 34 H 1.08998 * 109.47361 * 59.99726 * 5 4 2 35 35 H 1.09002 * 109.47408 * 300.00058 * 5 4 2 36 36 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 37 37 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 38 38 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 39 39 H 1.08002 * 126.90994 * 359.97438 * 11 10 9 40 40 H 1.09000 * 112.94374 * 145.62885 * 13 12 11 41 41 H 1.09002 * 113.76976 * 336.35198 * 14 13 12 42 42 H 1.08999 * 113.76656 * 107.74318 * 14 13 12 43 43 H 0.96996 * 120.00067 * 180.02562 * 19 18 16 44 44 H 1.09000 * 113.76645 * 221.14620 * 24 15 14 45 45 H 1.09000 * 113.87057 * 89.76846 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8552 1.4810 5 6 3.9307 -0.8875 1.2289 6 6 4.5896 -1.5775 2.3955 7 8 3.9139 -2.0049 3.3075 8 7 5.9296 -1.7186 2.4259 9 6 6.5694 -2.3948 3.5571 10 6 8.0611 -2.4259 3.3452 11 6 8.9655 -1.5390 3.8222 12 7 10.1748 -1.9633 3.3878 13 6 11.4605 -1.3166 3.6615 14 6 11.3994 -0.2669 4.7860 15 7 12.2612 0.5630 3.9182 16 6 13.1521 1.5788 4.1410 17 1 13.6720 2.0330 3.3105 18 6 13.3869 2.0249 5.4343 19 7 12.7537 1.4710 6.4466 20 14 14.6017 3.4111 5.7382 21 1 13.8902 4.7134 5.6839 22 1 15.2218 3.2413 7.0768 23 1 15.6585 3.3805 4.6955 24 6 11.7781 -0.1439 2.7162 25 7 10.0008 -3.0300 2.6887 26 7 8.7512 -3.3323 2.6440 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 4.3053 0.1333 1.1522 35 1 4.1591 -1.4281 0.3104 36 1 6.4699 -1.3764 1.6966 37 1 6.3442 -1.8556 4.4772 38 1 6.1917 -3.4145 3.6318 39 1 8.7629 -0.6690 4.4292 40 1 12.2794 -2.0278 3.7691 41 1 10.4046 0.1495 4.9447 42 1 11.8812 -0.5851 5.7105 43 1 12.9175 1.7829 7.3504 44 1 12.5618 -0.3638 1.9912 45 1 10.8951 0.3075 2.2640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107132124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:10 Heat of formation + Delta-G solvation = 95.564376 kcal Electronic energy + Delta-G solvation = -25851.380050 eV Core-core repulsion = 22033.659869 eV Total energy + Delta-G solvation = -3817.720181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.36374 -40.67566 -39.93600 -36.36279 -35.62220 -34.96911 -33.68930 -32.74225 -31.04929 -29.70486 -28.15555 -27.41801 -26.76611 -25.99594 -23.43222 -22.91364 -22.36849 -21.70596 -21.13903 -19.08306 -18.64823 -17.99540 -17.75527 -17.26552 -16.97957 -16.84218 -16.65458 -16.03627 -15.75324 -15.65202 -15.28458 -14.85473 -14.80861 -14.65222 -14.40937 -14.13726 -13.81775 -13.62231 -13.41573 -13.37534 -13.11056 -12.97444 -12.77693 -12.63177 -12.46576 -12.39437 -12.19649 -12.11530 -12.08422 -11.80484 -11.72492 -11.26703 -11.02035 -10.88379 -10.66043 -10.31907 -10.21119 -9.10928 -8.67029 -8.01138 -5.36361 0.45093 0.58877 1.25069 1.28585 1.48529 1.49887 1.51461 1.57421 1.59636 2.34785 2.42843 3.07177 3.11206 3.31048 3.32962 3.68505 3.74120 3.88334 3.91000 3.96892 3.99977 4.07167 4.15364 4.25816 4.36765 4.47642 4.56418 4.59171 4.69064 4.74702 4.80716 4.87798 4.91212 4.98363 5.00269 5.04672 5.09947 5.25748 5.26936 5.28598 5.36806 5.65501 5.77292 6.39312 6.80285 7.10054 7.44909 7.48843 8.33560 9.15581 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.001971 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.508434 B =14205.605135 C =15431.044414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.065 4.065 3 C -0.148 4.148 4 S -0.252 6.252 5 C -0.113 4.113 6 C 0.530 3.470 7 O -0.563 6.563 8 N -0.709 5.709 9 C 0.221 3.779 10 C -0.049 4.049 11 C -0.012 4.012 12 N -0.268 5.268 13 C 0.104 3.896 14 C 0.165 3.835 15 N -0.628 5.628 16 C -0.238 4.238 17 H 0.091 0.909 18 C -0.056 4.056 19 N -0.948 5.948 20 Si 0.979 3.021 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.126 3.874 25 N -0.108 5.108 26 N -0.280 5.280 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.414 0.586 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.208 0.792 40 H 0.138 0.862 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.253 0.747 44 H 0.076 0.924 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.592 -1.836 -13.710 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.194 4.194 3 C -0.207 4.207 4 S -0.026 6.026 5 C -0.264 4.264 6 C 0.316 3.684 7 O -0.441 6.441 8 N -0.362 5.362 9 C 0.095 3.905 10 C -0.188 4.188 11 C -0.165 4.165 12 N -0.061 5.061 13 C 0.002 3.998 14 C 0.038 3.962 15 N -0.355 5.355 16 C -0.365 4.365 17 H 0.109 0.891 18 C -0.250 4.250 19 N -0.596 5.596 20 Si 0.807 3.193 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.192 1.192 24 C 0.000 4.000 25 N -0.086 5.086 26 N -0.147 5.147 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.250 0.750 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.224 0.776 40 H 0.155 0.845 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.701 -3.452 -12.866 22.960 hybrid contribution 1.396 2.110 -0.018 2.530 sum -17.305 -1.342 -12.884 21.616 Atomic orbital electron populations 1.21601 0.91139 1.02923 1.03365 1.23304 1.00328 0.98937 0.96818 1.22109 1.01379 0.93840 1.03393 1.87796 1.03613 1.77775 1.33425 1.23443 0.95616 1.06459 1.00873 1.20079 0.82049 0.79022 0.87247 1.90754 1.63814 1.50315 1.39263 1.45817 1.06285 1.59442 1.24676 1.19256 0.82329 0.98967 0.89919 1.21881 0.97452 0.95406 1.04107 1.23844 0.83939 1.03786 1.04966 1.47721 1.09075 1.17473 1.31804 1.24699 0.81082 0.93700 1.00309 1.22622 0.94420 0.85545 0.93573 1.45900 1.45873 1.40572 1.03126 1.19334 1.14946 1.09097 0.93156 0.89096 1.25598 1.01906 1.02216 0.95302 1.69913 1.46039 1.45021 0.98628 0.85076 0.78552 0.78618 0.77052 1.21304 1.22172 1.19195 1.23017 0.98223 0.87648 0.91127 1.78291 1.13042 1.02602 1.14713 1.75014 0.97354 1.23470 1.18850 0.92356 0.89054 0.92121 0.88303 0.92154 0.90129 0.92088 0.84887 0.84841 0.74999 0.88566 0.90198 0.77558 0.84454 0.93462 0.91854 0.93804 0.90602 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.20 71.98 0.66 -0.68 16 2 C -0.07 -0.75 3.38 30.59 0.10 -0.64 16 3 C -0.15 -1.38 9.10 71.98 0.66 -0.73 16 4 S -0.25 -4.86 20.29 -56.49 -1.15 -6.01 16 5 C -0.11 -1.65 6.12 71.24 0.44 -1.22 16 6 C 0.53 11.33 7.85 87.66 0.69 12.01 16 7 O -0.56 -17.08 15.86 -3.04 -0.05 -17.13 16 8 N -0.71 -13.11 5.55 -466.79 -2.59 -15.70 16 9 C 0.22 4.76 6.23 85.63 0.53 5.30 16 10 C -0.05 -1.25 6.61 41.60 0.28 -0.97 16 11 C -0.01 -0.31 10.72 83.49 0.89 0.58 16 12 N -0.27 -8.03 3.54 -332.06 -1.18 -9.20 16 13 C 0.10 3.36 5.14 46.75 0.24 3.60 16 14 C 0.16 6.55 6.90 86.44 0.60 7.15 16 15 N -0.63 -27.87 3.70 -716.75 -2.65 -30.53 16 16 C -0.24 -11.91 10.70 84.03 0.90 -11.01 16 17 H 0.09 4.35 7.83 -2.91 -0.02 4.32 16 18 C -0.06 -2.90 5.50 84.86 0.47 -2.44 16 19 N -0.95 -51.88 11.39 21.65 0.25 -51.63 16 20 Si 0.98 42.01 29.55 68.60 2.03 44.04 16 21 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.30 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 C 0.13 4.28 8.74 86.49 0.76 5.04 16 25 N -0.11 -3.49 13.17 37.02 0.49 -3.00 16 26 N -0.28 -8.60 12.41 -48.60 -0.60 -9.21 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.51 6.92 -2.39 -0.02 0.50 16 32 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.13 1.35 7.14 -2.39 -0.02 1.33 16 35 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.41 6.04 8.46 -92.71 -0.78 5.25 16 37 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.21 4.64 6.74 -2.91 -0.02 4.62 16 40 H 0.14 4.31 8.14 -2.39 -0.02 4.30 16 41 H 0.05 1.81 6.31 -2.39 -0.02 1.80 16 42 H 0.06 2.89 7.16 -2.39 -0.02 2.88 16 43 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 44 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -67.24 389.55 1.98 -65.27 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.22 Total: 17.10 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 7.21 Total: 16.00 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -6.29 Total: -119.27 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.05 Total: -17.13 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: -4.86 SS G_CDS: -1.15 Total: -6.01 kcal Total: -67.24 1.98 -65.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107132124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.831 kcal (2) G-P(sol) polarization free energy of solvation -67.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds