Wall clock time and date at job start Sat Apr 11 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81400 * 103.00090 * 2 1 4 4 C 1.52997 * 109.47483 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47153 * 54.99930 * 4 3 2 6 6 C 1.53002 * 109.46817 * 295.00161 * 4 3 2 7 7 C 1.50701 * 109.47212 * 174.99928 * 4 3 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 4 3 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 4 3 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 4 11 11 C 1.50703 * 109.46835 * 180.02562 * 10 9 7 12 12 C 1.35353 * 126.74889 * 94.71606 * 11 10 9 13 13 N 1.35312 * 106.17385 * 179.85233 * 12 11 10 14 14 C 1.46499 * 125.87221 * 180.18432 * 13 12 11 15 15 C 1.53944 * 113.73893 * 14.03245 * 14 13 12 16 16 N 1.47808 * 86.03848 * 222.08457 * 15 14 13 17 17 C 1.36934 * 134.45547 * 204.64505 * 16 15 14 18 18 H 1.08008 * 119.99623 * 179.86628 * 17 16 15 19 19 C 1.38811 * 120.00514 * 359.86713 * 17 16 15 20 20 N 1.31621 * 119.99767 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00369 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47258 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47303 * 119.99868 * 21 19 17 24 24 H 1.48497 * 109.47476 * 240.00240 * 21 19 17 25 25 C 1.47582 * 91.05101 * 24.55174 * 16 15 14 26 26 N 1.28725 * 108.26340 * 0.41546 * 13 12 11 27 27 N 1.28640 * 110.17437 * 359.73362 * 26 13 12 28 28 H 1.09008 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47140 * 299.99691 * 1 2 3 30 30 H 1.08995 * 109.47780 * 59.99979 * 1 2 3 31 31 H 1.09000 * 109.46777 * 60.00001 * 3 2 1 32 32 H 1.09008 * 109.47130 * 300.00357 * 3 2 1 33 33 H 1.09000 * 109.46986 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.47075 * 299.99262 * 6 4 3 35 35 H 1.08996 * 109.47407 * 60.00219 * 6 4 3 36 36 H 0.96995 * 120.00011 * 0.02562 * 9 7 4 37 37 H 1.09001 * 109.47487 * 300.00114 * 10 9 7 38 38 H 1.09002 * 109.47182 * 60.00342 * 10 9 7 39 39 H 1.07994 * 126.91755 * 359.97438 * 12 11 10 40 40 H 1.09000 * 112.94707 * 145.62687 * 14 13 12 41 41 H 1.08999 * 113.77238 * 336.35355 * 15 14 13 42 42 H 1.09004 * 113.76678 * 107.74394 * 15 14 13 43 43 H 0.96996 * 120.00249 * 179.97438 * 20 19 17 44 44 H 1.09001 * 113.76819 * 221.15499 * 25 16 15 45 45 H 1.08995 * 113.87221 * 89.76520 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.1694 1.3954 -0.8427 6 6 4.3183 1.3916 1.3064 7 6 4.0818 3.4030 -0.1245 8 8 3.1951 4.2267 -0.2039 9 7 5.3708 3.7962 -0.1460 10 6 5.7008 5.2185 -0.2658 11 6 7.1982 5.3884 -0.2665 12 6 8.0028 5.4749 -1.3515 13 7 9.2612 5.6231 -0.8766 14 6 10.4737 5.7622 -1.6869 15 6 10.1963 6.0695 -3.1697 16 7 11.2704 5.0983 -3.4659 17 6 12.1265 4.9062 -4.5172 18 1 12.8441 4.0995 -4.4888 19 6 12.0722 5.7482 -5.6194 20 7 11.1980 6.7317 -5.6538 21 14 13.2404 5.4866 -7.0533 22 1 14.1194 4.3237 -6.7698 23 1 12.4580 5.2268 -8.2884 24 1 14.0733 6.7016 -7.2413 25 6 11.0515 4.4206 -2.1732 26 7 9.2104 5.6160 0.4096 27 7 7.9941 5.4776 0.8049 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8031 2.2371 0.8900 32 1 1.8030 2.2372 -0.8900 33 1 5.4014 1.5140 1.3058 34 1 3.8912 1.9363 2.1485 35 1 4.0727 0.3334 1.3960 36 1 6.0799 3.1375 -0.0821 37 1 5.2906 5.6095 -1.1969 38 1 5.2734 5.7628 0.5763 39 1 7.7011 5.4357 -2.3877 40 1 11.2147 6.4205 -1.2335 41 1 9.2103 5.7506 -3.5075 42 1 10.4358 7.0929 -3.4585 43 1 11.1603 7.3203 -6.4238 44 1 11.9725 4.1301 -1.6680 45 1 10.3176 3.6159 -2.2158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107146388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:16 Heat of formation + Delta-G solvation = 92.699210 kcal Electronic energy + Delta-G solvation = -26187.708570 eV Core-core repulsion = 22369.864146 eV Total energy + Delta-G solvation = -3817.844424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.35134 -40.96658 -39.93796 -36.40417 -35.61644 -34.95080 -33.64305 -32.39181 -29.91724 -29.71149 -28.41181 -27.77933 -26.83372 -26.01898 -24.32537 -23.41635 -22.30702 -21.15085 -21.04977 -19.05673 -18.63299 -18.12314 -17.59582 -17.06895 -16.95508 -16.73433 -16.60987 -16.03235 -15.77608 -15.46449 -15.32879 -14.82776 -14.59285 -14.46328 -14.39702 -14.11322 -13.88534 -13.66523 -13.54006 -13.39659 -13.26795 -12.98968 -12.96746 -12.80439 -12.63501 -12.43268 -12.35451 -12.22071 -12.06490 -11.78731 -11.72640 -11.12108 -11.01670 -10.91887 -10.84622 -10.27722 -10.16019 -9.10665 -8.65454 -8.01195 -5.36256 0.55351 0.66395 1.25540 1.29652 1.47952 1.49832 1.56481 1.58340 1.63588 2.40118 2.43250 3.07670 3.12178 3.31387 3.33696 3.53951 3.72855 3.78614 3.83912 3.92060 4.00884 4.15979 4.27609 4.33957 4.37219 4.47341 4.53658 4.57514 4.60522 4.66263 4.69780 4.87220 4.90696 4.92375 4.97969 5.01023 5.05503 5.10474 5.26801 5.31373 5.37114 5.66292 5.77508 6.45163 6.80666 7.13956 7.46036 7.48884 8.33711 9.15793 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.001994 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.586329 B =14039.164456 C =15089.851057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.284 6.284 3 C -0.059 4.059 4 C -0.088 4.088 5 H 0.119 0.881 6 C -0.142 4.142 7 C 0.526 3.474 8 O -0.577 6.577 9 N -0.712 5.712 10 C 0.219 3.781 11 C -0.049 4.049 12 C -0.013 4.013 13 N -0.268 5.268 14 C 0.105 3.895 15 C 0.165 3.835 16 N -0.628 5.628 17 C -0.236 4.236 18 H 0.091 0.909 19 C -0.057 4.057 20 N -0.949 5.949 21 Si 0.979 3.021 22 H -0.265 1.265 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.126 3.874 26 N -0.108 5.108 27 N -0.280 5.280 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.412 0.588 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.207 0.793 40 H 0.138 0.862 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.253 0.747 44 H 0.076 0.924 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.782 -10.848 11.372 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.058 6.058 3 C -0.207 4.207 4 C -0.110 4.110 5 H 0.137 0.863 6 C -0.199 4.199 7 C 0.312 3.688 8 O -0.456 6.456 9 N -0.364 5.364 10 C 0.094 3.906 11 C -0.189 4.189 12 C -0.167 4.167 13 N -0.061 5.061 14 C 0.002 3.998 15 C 0.039 3.961 16 N -0.355 5.355 17 C -0.364 4.364 18 H 0.109 0.891 19 C -0.251 4.251 20 N -0.596 5.596 21 Si 0.807 3.193 22 H -0.189 1.189 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.001 4.001 26 N -0.087 5.087 27 N -0.146 5.146 28 H 0.132 0.868 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.248 0.752 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.224 0.776 40 H 0.156 0.844 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.717 -10.973 12.334 22.794 hybrid contribution -0.382 0.991 -2.031 2.292 sum -16.099 -9.982 10.302 21.563 Atomic orbital electron populations 1.23466 0.91779 1.07522 1.05724 1.86811 1.10188 1.10725 1.98126 1.23113 0.97838 0.93990 1.05793 1.21028 0.95048 0.91863 1.03071 0.86287 1.21830 1.01441 1.02509 0.94155 1.20777 0.81952 0.91250 0.74812 1.90700 1.47881 1.55697 1.51344 1.45940 1.07742 1.08577 1.74141 1.19275 0.84985 0.82542 1.03842 1.21917 0.97591 1.10515 0.88852 1.23842 0.83654 1.06236 1.02926 1.47717 1.08812 1.43910 1.05648 1.24694 0.83399 1.01488 0.90187 1.22620 0.92034 0.96278 0.85206 1.45910 1.38125 1.33662 1.17788 1.19376 1.10595 1.12152 0.94284 0.89101 1.25593 1.00820 0.97833 1.00809 1.69917 1.38656 1.19863 1.31195 0.85008 0.78015 0.77537 0.78725 1.18880 1.21961 1.21919 1.23021 0.99125 0.92689 0.85222 1.78293 1.15883 1.20833 0.93676 1.75009 0.96050 1.16576 1.27009 0.86774 0.89700 0.89918 0.89814 0.89967 0.90848 0.92204 0.89907 0.75230 0.88562 0.90133 0.77603 0.84445 0.93469 0.91834 0.93806 0.90604 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.76 113.37 1.22 0.07 16 2 S -0.28 -4.27 21.19 -56.49 -1.20 -5.47 16 3 C -0.06 -0.95 4.73 71.98 0.34 -0.61 16 4 C -0.09 -1.34 2.72 -11.54 -0.03 -1.37 16 5 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 6 C -0.14 -1.85 8.92 71.98 0.64 -1.20 16 7 C 0.53 10.70 7.15 87.66 0.63 11.33 16 8 O -0.58 -15.83 15.92 -3.03 -0.05 -15.88 16 9 N -0.71 -13.27 5.44 -466.78 -2.54 -15.81 16 10 C 0.22 4.64 6.23 85.63 0.53 5.18 16 11 C -0.05 -1.26 6.61 41.60 0.28 -0.98 16 12 C -0.01 -0.35 10.72 83.49 0.89 0.55 16 13 N -0.27 -8.08 3.54 -332.04 -1.18 -9.26 16 14 C 0.10 3.39 5.14 46.75 0.24 3.63 16 15 C 0.17 6.58 6.90 86.44 0.60 7.18 16 16 N -0.63 -28.03 3.70 -716.69 -2.65 -30.69 16 17 C -0.24 -11.90 10.70 84.03 0.90 -11.00 16 18 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 19 C -0.06 -2.93 5.50 84.86 0.47 -2.47 16 20 N -0.95 -51.98 11.39 21.65 0.25 -51.73 16 21 Si 0.98 42.20 29.55 68.60 2.03 44.22 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 25 C 0.13 4.31 8.74 86.49 0.76 5.07 16 26 N -0.11 -3.51 13.17 37.02 0.49 -3.03 16 27 N -0.28 -8.60 12.41 -48.60 -0.60 -9.20 16 28 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.47 7.96 -2.39 -0.02 1.45 16 33 H 0.07 0.84 7.56 -2.39 -0.02 0.82 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.04 7.13 -2.39 -0.02 1.03 16 36 H 0.41 6.53 7.88 -92.71 -0.73 5.80 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.21 4.66 6.74 -2.91 -0.02 4.64 16 40 H 0.14 4.34 8.14 -2.39 -0.02 4.32 16 41 H 0.05 1.82 6.31 -2.39 -0.02 1.80 16 42 H 0.06 2.91 7.17 -2.38 -0.02 2.89 16 43 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 44 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -64.01 388.90 2.28 -61.73 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.28 Total: 19.73 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 7.46 Total: 15.38 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -6.24 Total: -119.71 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.05 Total: -15.88 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: -4.27 SS G_CDS: -1.20 Total: -5.47 kcal Total: -64.01 2.28 -61.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107146388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.428 kcal (2) G-P(sol) polarization free energy of solvation -64.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds