Wall clock time and date at job start Sat Apr 11 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 H 1.09003 * 109.46782 * 305.00017 * 3 2 1 5 5 S 1.81401 * 109.47000 * 65.00139 * 3 2 1 6 6 C 1.81402 * 102.99711 * 185.00105 * 5 3 2 7 7 C 1.50700 * 109.46851 * 184.99919 * 3 2 1 8 8 O 1.21281 * 120.00193 * 329.99729 * 7 3 2 9 9 N 1.34777 * 119.99816 * 149.99834 * 7 3 2 10 10 C 1.46499 * 120.00127 * 179.97438 * 9 7 3 11 11 C 1.50703 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.35344 * 126.75240 * 94.71822 * 11 10 9 13 13 N 1.35316 * 106.17725 * 179.84936 * 12 11 10 14 14 C 1.46498 * 125.86755 * 180.18659 * 13 12 11 15 15 C 1.53938 * 113.74506 * 14.03422 * 14 13 12 16 16 N 1.47811 * 86.03942 * 222.08506 * 15 14 13 17 17 C 1.36939 * 134.46057 * 204.64803 * 16 15 14 18 18 H 1.07996 * 120.00187 * 173.34816 * 17 16 15 19 19 C 1.38811 * 119.99828 * 353.33920 * 17 16 15 20 20 N 1.31623 * 120.00093 * 5.06989 * 19 17 16 21 21 Si 1.86796 * 120.00041 * 185.06397 * 19 17 16 22 22 H 1.48497 * 109.47108 * 94.99235 * 21 19 17 23 23 H 1.48502 * 109.47243 * 214.99168 * 21 19 17 24 24 H 1.48503 * 109.47205 * 334.99414 * 21 19 17 25 25 C 1.47585 * 91.05046 * 24.54551 * 16 15 14 26 26 N 1.28718 * 108.25981 * 0.41417 * 13 12 11 27 27 N 1.28633 * 110.17886 * 359.73497 * 26 13 12 28 28 H 1.09005 * 109.46917 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47186 * 299.99619 * 1 2 3 30 30 H 1.08990 * 109.46944 * 60.00228 * 1 2 3 31 31 H 1.08993 * 109.46913 * 239.99794 * 2 1 3 32 32 H 1.08999 * 109.46811 * 120.00060 * 2 1 3 33 33 H 1.09001 * 109.47127 * 299.99775 * 6 5 3 34 34 H 1.09001 * 109.47239 * 59.99789 * 6 5 3 35 35 H 1.08999 * 109.47110 * 179.97438 * 6 5 3 36 36 H 0.97006 * 120.00017 * 0.02562 * 9 7 3 37 37 H 1.08997 * 109.46970 * 300.00169 * 10 9 7 38 38 H 1.08997 * 109.46817 * 60.00195 * 10 9 7 39 39 H 1.08008 * 126.91241 * 359.97438 * 12 11 10 40 40 H 1.09001 * 112.94407 * 145.62762 * 14 13 12 41 41 H 1.09002 * 113.76989 * 336.34559 * 15 14 13 42 42 H 1.08995 * 113.76894 * 107.74923 * 15 14 13 43 43 H 0.96992 * 120.00267 * 179.97438 * 20 19 17 44 44 H 1.08990 * 113.77269 * 221.14915 * 25 16 15 45 45 H 1.09005 * 113.86633 * 89.76745 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 16 1.5601 2.2535 1.5501 6 6 2.1077 3.9650 1.3016 7 6 3.5419 1.4443 -0.1238 8 8 4.1884 0.5206 0.3231 9 7 4.1668 2.4724 -0.7312 10 6 5.6268 2.4745 -0.8511 11 6 6.0705 3.7259 -1.5640 12 6 6.4711 4.8852 -0.9917 13 7 6.7762 5.7226 -2.0098 14 6 7.2616 7.0981 -1.8738 15 6 7.7362 7.4502 -0.4524 16 7 7.0393 8.7387 -0.6494 17 6 7.1739 9.9932 -0.1171 18 1 6.5936 10.8132 -0.5137 19 6 8.0561 10.2109 0.9322 20 7 8.8356 9.2359 1.3497 21 14 8.1373 11.8875 1.7517 22 1 7.2631 11.8946 2.9521 23 1 9.5371 12.1732 2.1570 24 1 7.6761 12.9278 0.7975 25 6 6.1421 8.1313 -1.6516 26 7 6.5620 5.1045 -3.1184 27 7 6.1406 3.9114 -2.8870 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.1850 3.9814 1.1363 34 1 1.6005 4.3864 0.4338 35 1 1.8664 4.5556 2.1854 36 1 3.6498 3.2115 -1.0884 37 1 6.0730 2.4454 0.1429 38 1 5.9460 1.6002 -1.4184 39 1 6.5363 5.0982 0.0652 40 1 7.9686 7.3784 -2.6546 41 1 7.2951 6.8266 0.3252 42 1 8.8183 7.5442 -0.3612 43 1 9.4523 9.3881 2.0827 44 1 5.9538 8.7679 -2.5159 45 1 5.2311 7.7077 -1.2288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107158885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:21 Heat of formation + Delta-G solvation = 114.264220 kcal Electronic energy + Delta-G solvation = -26780.957293 eV Core-core repulsion = 22964.047998 eV Total energy + Delta-G solvation = -3816.909295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.16419 -39.97636 -38.44091 -35.53953 -34.74096 -33.49906 -32.08742 -31.45885 -29.49753 -28.45705 -28.00692 -26.38087 -25.32610 -24.45457 -22.39794 -22.00752 -21.17980 -20.78065 -19.70799 -17.98762 -17.31637 -17.08331 -16.77481 -16.43488 -15.76416 -15.48341 -15.17213 -15.00574 -14.78469 -14.33947 -14.15091 -13.99878 -13.70440 -13.53888 -13.21350 -13.12273 -12.97113 -12.49469 -12.29269 -12.20464 -12.09413 -11.91704 -11.55142 -11.46375 -11.32587 -11.23633 -11.03585 -11.02270 -10.62210 -10.53269 -10.27853 -10.13056 -9.97287 -9.63696 -9.32442 -9.19669 -9.11419 -8.00297 -7.31474 -6.12118 -3.46992 1.05869 1.71707 1.98141 2.30588 2.55443 2.73602 3.14064 3.21974 3.27980 3.29875 4.16103 4.21246 4.25138 4.36117 4.62772 4.66703 4.69457 4.83425 4.85749 4.89788 5.00991 5.05609 5.11162 5.14190 5.31755 5.38742 5.43327 5.48535 5.52770 5.65918 5.66710 5.79884 5.97297 5.98398 6.03693 6.06746 6.10506 6.21470 6.46153 6.70543 6.94199 7.10457 7.17360 7.61341 7.90851 8.64709 8.69048 9.35376 10.12996 11.05568 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.002487 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.109640 B =11256.858563 C =12495.007359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.091 4.091 3 C -0.082 4.082 4 H 0.105 0.895 5 S -0.207 6.207 6 C -0.138 4.138 7 C 0.519 3.481 8 O -0.522 6.522 9 N -0.723 5.723 10 C 0.215 3.785 11 C -0.064 4.064 12 C -0.014 4.014 13 N -0.264 5.264 14 C 0.076 3.924 15 C 0.167 3.833 16 N -0.598 5.598 17 C -0.235 4.235 18 H 0.088 0.912 19 C 0.001 3.999 20 N -0.917 5.917 21 Si 0.918 3.082 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.120 3.880 26 N -0.088 5.088 27 N -0.267 5.267 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.400 0.600 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.191 0.809 40 H 0.132 0.868 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.260 0.740 44 H 0.062 0.938 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.971 -13.422 -2.640 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.130 4.130 3 C -0.214 4.214 4 H 0.124 0.876 5 S 0.019 5.981 6 C -0.307 4.307 7 C 0.302 3.698 8 O -0.398 6.398 9 N -0.376 5.376 10 C 0.090 3.910 11 C -0.203 4.203 12 C -0.168 4.168 13 N -0.056 5.056 14 C -0.026 4.026 15 C 0.040 3.960 16 N -0.325 5.325 17 C -0.362 4.362 18 H 0.106 0.894 19 C -0.197 4.197 20 N -0.562 5.562 21 Si 0.747 3.253 22 H -0.212 1.212 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.007 4.007 26 N -0.067 5.067 27 N -0.133 5.133 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.235 0.765 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.208 0.792 40 H 0.150 0.850 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.783 -14.108 -2.767 19.238 hybrid contribution 0.525 2.070 0.460 2.185 sum -12.258 -12.038 -2.307 17.335 Atomic orbital electron populations 1.21858 0.94409 1.02211 1.02737 1.21195 0.96421 0.91066 1.04285 1.23466 0.95087 1.02918 0.99902 0.87647 1.87035 1.78972 1.08145 1.23922 1.23619 1.04959 0.95351 1.06726 1.20352 0.89387 0.82239 0.77851 1.90720 1.66844 1.35036 1.47200 1.46153 1.07985 1.23651 1.59790 1.19307 0.79260 0.92936 0.99450 1.21704 1.10324 0.96902 0.91408 1.23506 1.05309 0.90637 0.97375 1.47933 1.39963 1.13635 1.04112 1.25341 0.99907 0.73139 1.04221 1.22687 1.00255 0.85822 0.87252 1.45655 1.34610 1.05401 1.46784 1.18997 1.21705 0.83066 1.12384 0.89444 1.24890 0.98459 0.98430 0.97937 1.69775 1.25200 1.31618 1.29589 0.86020 0.77287 0.82425 0.79559 1.21243 1.21377 1.20256 1.22926 0.92634 0.91422 0.93757 1.78283 1.17395 1.01101 1.09892 1.75026 1.15559 1.08280 1.14467 0.92083 0.91371 0.92537 0.90232 0.89798 0.89894 0.90106 0.87376 0.76537 0.89456 0.89550 0.79231 0.85016 0.93942 0.89401 0.93029 0.91992 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.74 37.16 0.36 -0.69 16 2 C -0.09 -0.77 4.91 -26.73 -0.13 -0.90 16 3 C -0.08 -0.73 2.62 -27.88 -0.07 -0.80 16 4 H 0.11 0.75 8.14 -51.92 -0.42 0.32 16 5 S -0.21 -1.96 20.59 -107.50 -2.21 -4.18 16 6 C -0.14 -1.11 10.54 101.05 1.07 -0.04 16 7 C 0.52 5.83 6.55 -10.99 -0.07 5.76 16 8 O -0.52 -7.66 16.28 5.56 0.09 -7.57 16 9 N -0.72 -7.37 4.90 -61.47 -0.30 -7.67 16 10 C 0.22 2.44 6.23 -5.19 -0.03 2.41 16 11 C -0.06 -0.86 6.61 -82.78 -0.55 -1.41 16 12 C -0.01 -0.20 10.72 -17.05 -0.18 -0.38 16 13 N -0.26 -4.10 3.54 -56.30 -0.20 -4.30 16 14 C 0.08 1.25 5.14 -70.15 -0.36 0.89 16 15 C 0.17 3.30 6.81 -2.84 -0.02 3.28 16 16 N -0.60 -13.40 3.70 -177.89 -0.66 -14.06 16 17 C -0.23 -5.91 10.70 -15.06 -0.16 -6.07 16 18 H 0.09 2.13 7.83 -52.49 -0.41 1.72 16 19 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16 20 N -0.92 -24.61 11.51 55.49 0.64 -23.97 16 21 Si 0.92 20.34 29.56 -169.99 -5.02 15.32 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 C 0.12 2.13 8.74 -2.96 -0.03 2.10 16 26 N -0.09 -1.46 13.17 60.35 0.79 -0.67 16 27 N -0.27 -4.24 12.41 33.29 0.41 -3.82 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.50 7.14 -51.93 -0.37 0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.83 8.02 -51.93 -0.42 0.41 16 33 H 0.08 0.71 7.36 -51.92 -0.38 0.33 16 34 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.11 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.40 3.58 8.46 -40.82 -0.35 3.24 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.19 2.30 6.74 -52.48 -0.35 1.95 16 40 H 0.13 2.11 8.14 -51.93 -0.42 1.69 16 41 H 0.04 0.83 6.31 -51.93 -0.33 0.50 16 42 H 0.09 1.95 7.37 -51.93 -0.38 1.56 16 43 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 388.88 15.07 5.86 5.86 Total: -1.00 -29.99 388.88 -7.65 -37.64 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.77 Total: 3.34 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.27 Total: 4.09 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.69 Total: -54.49 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.09 Total: -7.57 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -2.21 Total: -4.18 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.99 -7.65 -37.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107158885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.905 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds