Wall clock time and date at job start Sat Apr 11 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 H 1.09003 * 109.46782 * 305.00017 * 3 2 1 5 5 S 1.81401 * 109.47000 * 65.00139 * 3 2 1 6 6 C 1.81402 * 102.99711 * 185.00105 * 5 3 2 7 7 C 1.50700 * 109.46851 * 184.99919 * 3 2 1 8 8 O 1.21281 * 120.00193 * 329.99729 * 7 3 2 9 9 N 1.34777 * 119.99816 * 149.99834 * 7 3 2 10 10 C 1.46499 * 120.00127 * 179.97438 * 9 7 3 11 11 C 1.50703 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.35344 * 126.75240 * 94.71822 * 11 10 9 13 13 N 1.35316 * 106.17725 * 179.84936 * 12 11 10 14 14 C 1.46498 * 125.86755 * 180.18659 * 13 12 11 15 15 C 1.53938 * 113.74506 * 14.03422 * 14 13 12 16 16 N 1.47811 * 86.03942 * 222.08506 * 15 14 13 17 17 C 1.36939 * 134.46057 * 204.64803 * 16 15 14 18 18 H 1.07996 * 120.00187 * 173.34816 * 17 16 15 19 19 C 1.38811 * 119.99828 * 353.33920 * 17 16 15 20 20 N 1.31623 * 120.00093 * 5.06989 * 19 17 16 21 21 Si 1.86796 * 120.00041 * 185.06397 * 19 17 16 22 22 H 1.48497 * 109.47108 * 94.99235 * 21 19 17 23 23 H 1.48502 * 109.47243 * 214.99168 * 21 19 17 24 24 H 1.48503 * 109.47205 * 334.99414 * 21 19 17 25 25 C 1.47585 * 91.05046 * 24.54551 * 16 15 14 26 26 N 1.28718 * 108.25981 * 0.41417 * 13 12 11 27 27 N 1.28633 * 110.17886 * 359.73497 * 26 13 12 28 28 H 1.09005 * 109.46917 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47186 * 299.99619 * 1 2 3 30 30 H 1.08990 * 109.46944 * 60.00228 * 1 2 3 31 31 H 1.08993 * 109.46913 * 239.99794 * 2 1 3 32 32 H 1.08999 * 109.46811 * 120.00060 * 2 1 3 33 33 H 1.09001 * 109.47127 * 299.99775 * 6 5 3 34 34 H 1.09001 * 109.47239 * 59.99789 * 6 5 3 35 35 H 1.08999 * 109.47110 * 179.97438 * 6 5 3 36 36 H 0.97006 * 120.00017 * 0.02562 * 9 7 3 37 37 H 1.08997 * 109.46970 * 300.00169 * 10 9 7 38 38 H 1.08997 * 109.46817 * 60.00195 * 10 9 7 39 39 H 1.08008 * 126.91241 * 359.97438 * 12 11 10 40 40 H 1.09001 * 112.94407 * 145.62762 * 14 13 12 41 41 H 1.09002 * 113.76989 * 336.34559 * 15 14 13 42 42 H 1.08995 * 113.76894 * 107.74923 * 15 14 13 43 43 H 0.96992 * 120.00267 * 179.97438 * 20 19 17 44 44 H 1.08990 * 113.77269 * 221.14915 * 25 16 15 45 45 H 1.09005 * 113.86633 * 89.76745 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 16 1.5601 2.2535 1.5501 6 6 2.1077 3.9650 1.3016 7 6 3.5419 1.4443 -0.1238 8 8 4.1884 0.5206 0.3231 9 7 4.1668 2.4724 -0.7312 10 6 5.6268 2.4745 -0.8511 11 6 6.0705 3.7259 -1.5640 12 6 6.4711 4.8852 -0.9917 13 7 6.7762 5.7226 -2.0098 14 6 7.2616 7.0981 -1.8738 15 6 7.7362 7.4502 -0.4524 16 7 7.0393 8.7387 -0.6494 17 6 7.1739 9.9932 -0.1171 18 1 6.5936 10.8132 -0.5137 19 6 8.0561 10.2109 0.9322 20 7 8.8356 9.2359 1.3497 21 14 8.1373 11.8875 1.7517 22 1 7.2631 11.8946 2.9521 23 1 9.5371 12.1732 2.1570 24 1 7.6761 12.9278 0.7975 25 6 6.1421 8.1313 -1.6516 26 7 6.5620 5.1045 -3.1184 27 7 6.1406 3.9114 -2.8870 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.1850 3.9814 1.1363 34 1 1.6005 4.3864 0.4338 35 1 1.8664 4.5556 2.1854 36 1 3.6498 3.2115 -1.0884 37 1 6.0730 2.4454 0.1429 38 1 5.9460 1.6002 -1.4184 39 1 6.5363 5.0982 0.0652 40 1 7.9686 7.3784 -2.6546 41 1 7.2951 6.8266 0.3252 42 1 8.8183 7.5442 -0.3612 43 1 9.4523 9.3881 2.0827 44 1 5.9538 8.7679 -2.5159 45 1 5.2311 7.7077 -1.2288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107158885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:20 Heat of formation + Delta-G solvation = 95.401563 kcal Electronic energy + Delta-G solvation = -26781.775239 eV Core-core repulsion = 22964.047998 eV Total energy + Delta-G solvation = -3817.727241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.37975 -40.89938 -39.94974 -36.49955 -35.48804 -34.98775 -33.69012 -32.57811 -30.22320 -29.71081 -29.15383 -27.38121 -26.77615 -26.00513 -23.45020 -23.11056 -22.32241 -21.64030 -21.15439 -19.11516 -18.76920 -18.07919 -17.88420 -17.48373 -16.97325 -16.84115 -16.28822 -16.02858 -15.84670 -15.62503 -15.29957 -14.84233 -14.64873 -14.47794 -14.40881 -14.17727 -13.82898 -13.72729 -13.57697 -13.41383 -13.09740 -12.98014 -12.82568 -12.76120 -12.64190 -12.43691 -12.15730 -12.10710 -11.96837 -11.81122 -11.75761 -11.40572 -11.03748 -10.94140 -10.87815 -10.32731 -10.24124 -9.10515 -8.74218 -8.03343 -5.37630 0.32823 0.54074 1.17879 1.27005 1.27893 1.47383 1.49720 1.56995 1.89769 2.22451 2.42091 3.04957 3.09545 3.30233 3.31586 3.46616 3.64404 3.71682 3.89519 3.97686 4.03840 4.13889 4.26183 4.28715 4.39782 4.44183 4.50724 4.56003 4.58447 4.68071 4.81961 4.87086 4.89950 4.99658 5.03042 5.06596 5.10241 5.17244 5.22379 5.36749 5.43288 5.64075 5.75932 6.32952 6.79354 7.04048 7.43582 7.47784 8.33119 9.14030 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.002487 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.109640 B =11256.858563 C =12495.007359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.074 4.074 4 H 0.129 0.871 5 S -0.233 6.233 6 C -0.133 4.133 7 C 0.520 3.480 8 O -0.560 6.560 9 N -0.713 5.713 10 C 0.219 3.781 11 C -0.050 4.050 12 C -0.012 4.012 13 N -0.268 5.268 14 C 0.104 3.896 15 C 0.168 3.832 16 N -0.628 5.628 17 C -0.238 4.238 18 H 0.091 0.909 19 C -0.054 4.054 20 N -0.947 5.947 21 Si 0.977 3.023 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.266 1.266 25 C 0.126 3.874 26 N -0.107 5.107 27 N -0.280 5.280 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.409 0.591 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.206 0.794 40 H 0.138 0.862 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.253 0.747 44 H 0.076 0.924 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.511 -13.220 -3.308 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.205 4.205 4 H 0.147 0.853 5 S -0.007 6.007 6 C -0.302 4.302 7 C 0.304 3.696 8 O -0.438 6.438 9 N -0.366 5.366 10 C 0.094 3.906 11 C -0.189 4.189 12 C -0.166 4.166 13 N -0.060 5.060 14 C 0.001 3.999 15 C 0.042 3.958 16 N -0.355 5.355 17 C -0.366 4.366 18 H 0.109 0.891 19 C -0.249 4.249 20 N -0.594 5.594 21 Si 0.805 3.195 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.191 1.191 25 C 0.000 4.000 26 N -0.085 5.085 27 N -0.146 5.146 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.245 0.755 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.223 0.777 40 H 0.156 0.844 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.364 -13.901 -3.481 20.290 hybrid contribution 0.966 1.924 0.628 2.242 sum -13.398 -11.977 -2.853 18.196 Atomic orbital electron populations 1.21812 0.92940 1.02873 1.02972 1.21195 0.97621 0.90651 1.03460 1.23476 0.93235 1.03477 1.00331 0.85280 1.87183 1.78934 1.09682 1.24886 1.23658 1.04653 0.94125 1.07730 1.20748 0.90291 0.81592 0.76989 1.90708 1.67829 1.36466 1.48846 1.46046 1.07530 1.23708 1.59309 1.19275 0.80026 0.91755 0.99521 1.21870 1.09249 0.97224 0.90540 1.23817 1.04567 0.90402 0.97791 1.47722 1.40440 1.13325 1.04519 1.24733 0.99220 0.73657 1.02243 1.22556 0.98529 0.85350 0.89371 1.45887 1.36476 1.05409 1.47704 1.19320 1.20757 0.84574 1.11920 0.89103 1.25607 0.98829 1.01413 0.99011 1.69920 1.26165 1.33189 1.30111 0.85094 0.76514 0.79349 0.78579 1.21410 1.22221 1.19074 1.23018 0.92666 0.91418 0.92922 1.78294 1.18480 1.01541 1.10212 1.75016 1.15839 1.08063 1.15707 0.91284 0.91975 0.91362 0.90005 0.91715 0.90456 0.88454 0.86939 0.75521 0.88661 0.89956 0.77684 0.84395 0.93437 0.92230 0.93769 0.90616 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.74 71.98 0.70 -1.07 16 2 C -0.09 -1.44 4.91 30.60 0.15 -1.29 16 3 C -0.07 -1.20 2.62 29.85 0.08 -1.12 16 4 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 5 S -0.23 -4.12 20.59 -56.49 -1.16 -5.29 16 6 C -0.13 -1.87 10.54 113.37 1.20 -0.68 16 7 C 0.52 11.02 6.55 87.66 0.57 11.60 16 8 O -0.56 -16.17 16.28 -3.03 -0.05 -16.22 16 9 N -0.71 -13.22 4.90 -466.79 -2.29 -15.50 16 10 C 0.22 4.62 6.23 85.63 0.53 5.16 16 11 C -0.05 -1.23 6.61 41.60 0.28 -0.95 16 12 C -0.01 -0.32 10.72 83.49 0.89 0.58 16 13 N -0.27 -7.84 3.54 -332.05 -1.18 -9.01 16 14 C 0.10 3.28 5.14 46.75 0.24 3.52 16 15 C 0.17 6.60 6.81 86.44 0.59 7.19 16 16 N -0.63 -27.57 3.70 -716.72 -2.65 -30.23 16 17 C -0.24 -11.83 10.70 84.03 0.90 -10.93 16 18 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 19 C -0.05 -2.79 5.50 84.86 0.47 -2.32 16 20 N -0.95 -51.44 11.51 21.65 0.25 -51.19 16 21 Si 0.98 41.75 29.56 68.60 2.03 43.78 16 22 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.30 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 25 C 0.13 4.21 8.74 86.48 0.76 4.97 16 26 N -0.11 -3.38 13.17 37.02 0.49 -2.89 16 27 N -0.28 -8.40 12.41 -48.60 -0.60 -9.00 16 28 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.06 0.83 7.14 -2.38 -0.02 0.81 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.28 8.02 -2.39 -0.02 1.26 16 33 H 0.08 1.18 7.36 -2.39 -0.02 1.16 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.41 6.31 8.46 -92.70 -0.78 5.52 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.21 4.54 6.74 -2.91 -0.02 4.52 16 40 H 0.14 4.23 8.14 -2.39 -0.02 4.21 16 41 H 0.05 1.81 6.31 -2.39 -0.02 1.79 16 42 H 0.06 2.68 7.37 -2.39 -0.02 2.66 16 43 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -63.81 388.88 2.41 -61.40 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.22 Total: 19.49 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 7.35 Total: 14.66 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -5.98 Total: -117.82 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.05 Total: -16.22 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -1.16 Total: -5.29 kcal Total: -63.81 2.41 -61.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107158885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.804 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds