Wall clock time and date at job start Sat Apr 11 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46855 * 2 1 4 4 H 1.08994 * 109.47144 * 54.42462 * 3 2 1 5 5 S 1.81399 * 109.47217 * 294.41731 * 3 2 1 6 6 C 1.81401 * 103.00007 * 172.83789 * 5 3 2 7 7 C 1.50710 * 109.46801 * 174.42226 * 3 2 1 8 8 O 1.21276 * 120.00124 * 100.00196 * 7 3 2 9 9 N 1.34781 * 119.99401 * 279.99925 * 7 3 2 10 10 C 1.46499 * 119.99603 * 180.02562 * 9 7 3 11 11 C 1.50696 * 109.47320 * 180.02562 * 10 9 7 12 12 C 1.35344 * 126.75455 * 94.70915 * 11 10 9 13 13 N 1.35318 * 106.17939 * 179.85813 * 12 11 10 14 14 C 1.46495 * 125.87036 * 180.19000 * 13 12 11 15 15 C 1.53945 * 113.74374 * 14.03277 * 14 13 12 16 16 N 1.47817 * 86.03682 * 222.08697 * 15 14 13 17 17 C 1.36941 * 134.45637 * 204.64392 * 16 15 14 18 18 H 1.07997 * 119.99782 * 179.86200 * 17 16 15 19 19 C 1.38810 * 119.99857 * 359.86559 * 17 16 15 20 20 N 1.31623 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99907 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47437 * 59.99761 * 21 19 17 23 23 H 1.48501 * 109.47407 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47010 * 299.99766 * 21 19 17 25 25 C 1.47576 * 91.05162 * 24.54841 * 16 15 14 26 26 N 1.28716 * 108.25649 * 0.41298 * 13 12 11 27 27 N 1.28635 * 110.18067 * 359.74134 * 26 13 12 28 28 H 1.09005 * 109.46801 * 175.28382 * 1 2 3 29 29 H 1.08995 * 109.46950 * 295.28131 * 1 2 3 30 30 H 1.08996 * 109.47393 * 55.28677 * 1 2 3 31 31 H 1.09002 * 109.47061 * 240.00243 * 2 1 3 32 32 H 1.08998 * 109.47130 * 120.00146 * 2 1 3 33 33 H 1.08996 * 109.47414 * 175.08375 * 6 5 3 34 34 H 1.09004 * 109.46689 * 55.08490 * 6 5 3 35 35 H 1.09000 * 109.46988 * 295.09040 * 6 5 3 36 36 H 0.96994 * 120.00472 * 0.02562 * 9 7 3 37 37 H 1.09001 * 109.47388 * 300.00046 * 10 9 7 38 38 H 1.09002 * 109.47564 * 59.99740 * 10 9 7 39 39 H 1.08004 * 126.91013 * 0.02562 * 12 11 10 40 40 H 1.08995 * 112.94462 * 145.62630 * 14 13 12 41 41 H 1.09001 * 113.76940 * 336.34849 * 15 14 13 42 42 H 1.08992 * 113.77468 * 107.74737 * 15 14 13 43 43 H 0.96996 * 119.99972 * 180.02562 * 20 19 17 44 44 H 1.09003 * 113.77265 * 221.15896 * 25 16 15 45 45 H 1.08996 * 113.87322 * 89.76611 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5974 1.9843 0.8358 5 16 1.5749 2.2483 -1.5573 6 6 2.0600 3.9747 -1.2842 7 6 3.5407 1.4447 0.1381 8 8 4.2396 1.5944 -0.8416 9 7 4.1060 1.2804 1.3506 10 6 5.5648 1.2831 1.4849 11 6 5.9364 1.0819 2.9314 12 6 6.2385 -0.0916 3.5343 13 7 6.5091 0.2068 4.8261 14 6 6.8916 -0.7511 5.8664 15 6 7.3034 -2.1296 5.3187 16 7 6.5215 -2.6942 6.4389 17 6 6.5527 -3.8755 7.1308 18 1 5.8525 -4.0492 7.9345 19 6 7.4843 -4.8497 6.7992 20 7 8.3380 -4.6377 5.8200 21 14 7.5263 -6.4614 7.7424 22 1 6.2194 -7.1520 7.6011 23 1 8.6038 -7.3259 7.1976 24 1 7.7889 -6.1879 9.1782 25 6 5.6960 -1.4732 6.5139 26 7 6.3682 1.4763 4.9847 27 7 6.0269 2.0272 3.8735 28 1 -0.3633 -1.0243 -0.0845 29 1 -0.3633 0.4389 0.9292 30 1 -0.3634 0.5852 -0.8447 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.9045 4.5451 -2.1999 34 1 3.1128 4.0164 -1.0045 35 1 1.4545 4.4000 -0.4839 36 1 3.5470 1.1603 2.1341 37 1 5.9864 0.4757 0.8862 38 1 5.9600 2.2376 1.1373 39 1 6.2618 -1.0693 3.0758 40 1 7.5967 -0.3368 6.5870 41 1 6.8880 -2.3539 4.3362 42 1 8.3732 -2.3269 5.3847 43 1 8.9887 -5.3186 5.5881 44 1 5.4851 -1.1472 7.5325 45 1 4.8070 -1.5024 5.8840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107158886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:23 Heat of formation + Delta-G solvation = 116.760428 kcal Electronic energy + Delta-G solvation = -26542.325728 eV Core-core repulsion = 22725.524677 eV Total energy + Delta-G solvation = -3816.801051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.14614 -39.93238 -38.42231 -35.34815 -35.04605 -33.45426 -32.03626 -31.34101 -29.44266 -28.47547 -27.99033 -26.33703 -25.29973 -24.43811 -22.49809 -21.99614 -21.20644 -20.78684 -19.68711 -17.90419 -17.32242 -17.10744 -16.68900 -16.15497 -15.71139 -15.48275 -15.16680 -15.10303 -14.77144 -14.40929 -14.15809 -13.95008 -13.68349 -13.47022 -13.36314 -13.01681 -12.82963 -12.49708 -12.33650 -12.24632 -12.15831 -11.90072 -11.55503 -11.44490 -11.36509 -11.22433 -11.02475 -10.98136 -10.59960 -10.31449 -10.30501 -10.12456 -9.93003 -9.62281 -9.29079 -9.17352 -9.09841 -7.85076 -7.30982 -6.08917 -3.44663 1.26155 1.74110 2.11695 2.32623 2.48568 2.57389 3.22269 3.23974 3.28676 3.29790 4.17688 4.26775 4.36547 4.36983 4.61021 4.65029 4.68794 4.85586 4.88964 4.93791 4.93887 5.06206 5.07803 5.15565 5.34852 5.34985 5.43934 5.48990 5.53528 5.62750 5.67494 5.71592 5.94644 5.98899 6.04816 6.08524 6.13791 6.23179 6.47499 6.74382 6.96425 7.11252 7.21794 7.63167 7.94029 8.66322 8.70971 9.37439 10.14304 11.08219 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.002220 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.891912 B =12610.771668 C =13631.504504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 C -0.086 4.086 4 H 0.107 0.893 5 S -0.196 6.196 6 C -0.131 4.131 7 C 0.511 3.489 8 O -0.517 6.517 9 N -0.718 5.718 10 C 0.216 3.784 11 C -0.064 4.064 12 C -0.014 4.014 13 N -0.264 5.264 14 C 0.077 3.923 15 C 0.164 3.836 16 N -0.598 5.598 17 C -0.234 4.234 18 H 0.087 0.913 19 C 0.000 4.000 20 N -0.919 5.919 21 Si 0.920 3.080 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.281 1.281 25 C 0.120 3.880 26 N -0.088 5.088 27 N -0.268 5.268 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.403 0.597 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.191 0.809 40 H 0.132 0.868 41 H 0.041 0.959 42 H 0.092 0.908 43 H 0.260 0.740 44 H 0.062 0.938 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.144 11.900 -10.446 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.138 4.138 3 C -0.218 4.218 4 H 0.125 0.875 5 S 0.031 5.969 6 C -0.300 4.300 7 C 0.293 3.707 8 O -0.392 6.392 9 N -0.371 5.371 10 C 0.091 3.909 11 C -0.203 4.203 12 C -0.167 4.167 13 N -0.057 5.057 14 C -0.025 4.025 15 C 0.037 3.963 16 N -0.325 5.325 17 C -0.361 4.361 18 H 0.105 0.895 19 C -0.198 4.198 20 N -0.565 5.565 21 Si 0.749 3.251 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.207 1.207 25 C -0.007 4.007 26 N -0.067 5.067 27 N -0.134 5.134 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.237 0.763 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.208 0.792 40 H 0.150 0.850 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.865 12.409 -10.942 20.359 hybrid contribution 0.420 -1.392 1.381 2.005 sum -11.444 11.017 -9.561 18.541 Atomic orbital electron populations 1.21858 0.93991 1.02519 1.02834 1.21299 0.97412 0.91141 1.03924 1.23620 0.95272 1.02450 1.00494 0.87492 1.86664 1.79869 1.06906 1.23456 1.23472 1.04966 0.95500 1.06031 1.20477 0.90129 0.76886 0.83234 1.90765 1.63374 1.47922 1.37124 1.46019 1.07728 1.74004 1.09351 1.19299 0.79790 1.03528 0.88291 1.21696 1.11007 0.90196 0.97419 1.23513 1.05844 1.01909 0.85476 1.47929 1.41309 1.07176 1.09247 1.25315 1.01017 0.86816 0.89387 1.22747 1.00073 0.81881 0.91591 1.45664 1.35611 1.14753 1.36453 1.18950 1.15286 0.90110 1.11728 0.89529 1.24856 0.97806 0.98805 0.98336 1.69748 1.21306 1.35005 1.30423 0.86084 0.77454 0.82385 0.79160 1.20850 1.21289 1.20718 1.22926 0.92614 0.86252 0.98914 1.78277 1.18475 0.90759 1.19194 1.75018 1.15748 1.26929 0.95739 0.91968 0.92396 0.91168 0.90231 0.90012 0.87968 0.90078 0.90608 0.76267 0.89480 0.89748 0.79196 0.85008 0.94105 0.89003 0.92998 0.91964 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.82 37.16 0.36 -0.67 16 2 C -0.10 -0.77 5.38 -26.73 -0.14 -0.92 16 3 C -0.09 -0.75 2.60 -27.88 -0.07 -0.83 16 4 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 5 S -0.20 -1.93 19.79 -107.50 -2.13 -4.06 16 6 C -0.13 -1.06 10.61 101.05 1.07 0.01 16 7 C 0.51 5.65 6.66 -10.98 -0.07 5.57 16 8 O -0.52 -7.51 15.86 5.56 0.09 -7.42 16 9 N -0.72 -7.23 5.55 -61.47 -0.34 -7.58 16 10 C 0.22 2.45 6.23 -5.20 -0.03 2.41 16 11 C -0.06 -0.86 6.61 -82.78 -0.55 -1.41 16 12 C -0.01 -0.19 10.72 -17.05 -0.18 -0.37 16 13 N -0.26 -4.15 3.54 -56.30 -0.20 -4.35 16 14 C 0.08 1.28 5.14 -70.14 -0.36 0.92 16 15 C 0.16 3.27 6.90 -2.84 -0.02 3.26 16 16 N -0.60 -13.51 3.70 -177.87 -0.66 -14.17 16 17 C -0.23 -5.92 10.70 -15.06 -0.16 -6.09 16 18 H 0.09 2.11 7.83 -52.49 -0.41 1.70 16 19 C 0.00 -0.01 5.50 -17.43 -0.10 -0.10 16 20 N -0.92 -24.78 11.39 55.49 0.63 -24.15 16 21 Si 0.92 20.43 29.55 -169.99 -5.02 15.40 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.12 2.16 8.74 -2.97 -0.03 2.13 16 26 N -0.09 -1.48 13.17 60.35 0.79 -0.68 16 27 N -0.27 -4.27 12.41 33.28 0.41 -3.86 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.51 7.01 -51.93 -0.36 0.14 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.77 7.77 -51.92 -0.40 0.36 16 35 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.40 3.53 8.46 -40.82 -0.35 3.18 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.19 2.32 6.74 -52.48 -0.35 1.97 16 40 H 0.13 2.14 8.14 -51.93 -0.42 1.72 16 41 H 0.04 0.80 6.31 -51.93 -0.33 0.47 16 42 H 0.09 2.06 7.16 -51.93 -0.37 1.68 16 43 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 389.19 15.07 5.87 5.87 Total: -1.00 -30.28 389.19 -7.62 -37.90 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.79 Total: 3.18 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -0.28 Total: 3.92 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.64 Total: -54.79 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.09 Total: -7.42 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.13 Total: -4.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.28 -7.62 -37.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107158886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.658 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds