Wall clock time and date at job start Sat Apr 11 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46855 * 2 1 4 4 H 1.08994 * 109.47144 * 54.42462 * 3 2 1 5 5 S 1.81399 * 109.47217 * 294.41731 * 3 2 1 6 6 C 1.81401 * 103.00007 * 172.83789 * 5 3 2 7 7 C 1.50710 * 109.46801 * 174.42226 * 3 2 1 8 8 O 1.21276 * 120.00124 * 100.00196 * 7 3 2 9 9 N 1.34781 * 119.99401 * 279.99925 * 7 3 2 10 10 C 1.46499 * 119.99603 * 180.02562 * 9 7 3 11 11 C 1.50696 * 109.47320 * 180.02562 * 10 9 7 12 12 C 1.35344 * 126.75455 * 94.70915 * 11 10 9 13 13 N 1.35318 * 106.17939 * 179.85813 * 12 11 10 14 14 C 1.46495 * 125.87036 * 180.19000 * 13 12 11 15 15 C 1.53945 * 113.74374 * 14.03277 * 14 13 12 16 16 N 1.47817 * 86.03682 * 222.08697 * 15 14 13 17 17 C 1.36941 * 134.45637 * 204.64392 * 16 15 14 18 18 H 1.07997 * 119.99782 * 179.86200 * 17 16 15 19 19 C 1.38810 * 119.99857 * 359.86559 * 17 16 15 20 20 N 1.31623 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99907 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47437 * 59.99761 * 21 19 17 23 23 H 1.48501 * 109.47407 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47010 * 299.99766 * 21 19 17 25 25 C 1.47576 * 91.05162 * 24.54841 * 16 15 14 26 26 N 1.28716 * 108.25649 * 0.41298 * 13 12 11 27 27 N 1.28635 * 110.18067 * 359.74134 * 26 13 12 28 28 H 1.09005 * 109.46801 * 175.28382 * 1 2 3 29 29 H 1.08995 * 109.46950 * 295.28131 * 1 2 3 30 30 H 1.08996 * 109.47393 * 55.28677 * 1 2 3 31 31 H 1.09002 * 109.47061 * 240.00243 * 2 1 3 32 32 H 1.08998 * 109.47130 * 120.00146 * 2 1 3 33 33 H 1.08996 * 109.47414 * 175.08375 * 6 5 3 34 34 H 1.09004 * 109.46689 * 55.08490 * 6 5 3 35 35 H 1.09000 * 109.46988 * 295.09040 * 6 5 3 36 36 H 0.96994 * 120.00472 * 0.02562 * 9 7 3 37 37 H 1.09001 * 109.47388 * 300.00046 * 10 9 7 38 38 H 1.09002 * 109.47564 * 59.99740 * 10 9 7 39 39 H 1.08004 * 126.91013 * 0.02562 * 12 11 10 40 40 H 1.08995 * 112.94462 * 145.62630 * 14 13 12 41 41 H 1.09001 * 113.76940 * 336.34849 * 15 14 13 42 42 H 1.08992 * 113.77468 * 107.74737 * 15 14 13 43 43 H 0.96996 * 119.99972 * 180.02562 * 20 19 17 44 44 H 1.09003 * 113.77265 * 221.15896 * 25 16 15 45 45 H 1.08996 * 113.87322 * 89.76611 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5974 1.9843 0.8358 5 16 1.5749 2.2483 -1.5573 6 6 2.0600 3.9747 -1.2842 7 6 3.5407 1.4447 0.1381 8 8 4.2396 1.5944 -0.8416 9 7 4.1060 1.2804 1.3506 10 6 5.5648 1.2831 1.4849 11 6 5.9364 1.0819 2.9314 12 6 6.2385 -0.0916 3.5343 13 7 6.5091 0.2068 4.8261 14 6 6.8916 -0.7511 5.8664 15 6 7.3034 -2.1296 5.3187 16 7 6.5215 -2.6942 6.4389 17 6 6.5527 -3.8755 7.1308 18 1 5.8525 -4.0492 7.9345 19 6 7.4843 -4.8497 6.7992 20 7 8.3380 -4.6377 5.8200 21 14 7.5263 -6.4614 7.7424 22 1 6.2194 -7.1520 7.6011 23 1 8.6038 -7.3259 7.1976 24 1 7.7889 -6.1879 9.1782 25 6 5.6960 -1.4732 6.5139 26 7 6.3682 1.4763 4.9847 27 7 6.0269 2.0272 3.8735 28 1 -0.3633 -1.0243 -0.0845 29 1 -0.3633 0.4389 0.9292 30 1 -0.3634 0.5852 -0.8447 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.9045 4.5451 -2.1999 34 1 3.1128 4.0164 -1.0045 35 1 1.4545 4.4000 -0.4839 36 1 3.5470 1.1603 2.1341 37 1 5.9864 0.4757 0.8862 38 1 5.9600 2.2376 1.1373 39 1 6.2618 -1.0693 3.0758 40 1 7.5967 -0.3368 6.5870 41 1 6.8880 -2.3539 4.3362 42 1 8.3732 -2.3269 5.3847 43 1 8.9887 -5.3186 5.5881 44 1 5.4851 -1.1472 7.5325 45 1 4.8070 -1.5024 5.8840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107158886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:23 Heat of formation + Delta-G solvation = 97.351384 kcal Electronic energy + Delta-G solvation = -26543.167367 eV Core-core repulsion = 22725.524677 eV Total energy + Delta-G solvation = -3817.642691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.36845 -40.84297 -39.94084 -36.35573 -35.73334 -34.94695 -33.65095 -32.45342 -30.13171 -29.71486 -29.18041 -27.34817 -26.75586 -25.99634 -23.44165 -23.14143 -22.37731 -21.64656 -21.14289 -19.10325 -18.70274 -18.08597 -17.87933 -17.28100 -16.96915 -16.56025 -16.42126 -15.97731 -15.86238 -15.68218 -15.34173 -14.82522 -14.69395 -14.45515 -14.35601 -14.17269 -13.82017 -13.63228 -13.50013 -13.39999 -13.09105 -12.99552 -12.95355 -12.74919 -12.63798 -12.44406 -12.15915 -12.14271 -11.97707 -11.81487 -11.72102 -11.13796 -11.02671 -10.95490 -10.86954 -10.30070 -10.19921 -9.11016 -8.60541 -8.00972 -5.36270 0.51844 0.59382 1.19675 1.28085 1.41114 1.49093 1.50711 1.56445 1.63811 2.32410 2.43093 3.07092 3.10790 3.30752 3.32632 3.58336 3.70064 3.74532 3.90798 3.96327 3.99636 4.15041 4.29273 4.31708 4.36116 4.44633 4.48902 4.56298 4.58990 4.68416 4.78452 4.86601 4.90645 4.99916 5.04186 5.08944 5.09666 5.15345 5.25693 5.36622 5.42618 5.65134 5.77313 6.38752 6.80244 7.08919 7.44520 7.48969 8.33564 9.15567 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.002220 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.891912 B =12610.771668 C =13631.504504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.076 4.076 4 H 0.129 0.871 5 S -0.233 6.233 6 C -0.123 4.123 7 C 0.513 3.487 8 O -0.555 6.555 9 N -0.709 5.709 10 C 0.220 3.780 11 C -0.049 4.049 12 C -0.012 4.012 13 N -0.268 5.268 14 C 0.104 3.896 15 C 0.165 3.835 16 N -0.628 5.628 17 C -0.239 4.239 18 H 0.091 0.909 19 C -0.056 4.056 20 N -0.949 5.949 21 Si 0.979 3.021 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.276 1.276 25 C 0.126 3.874 26 N -0.108 5.108 27 N -0.281 5.281 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.412 0.588 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.207 0.793 40 H 0.138 0.862 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.253 0.747 44 H 0.076 0.924 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.651 12.343 -9.987 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 C -0.208 4.208 4 H 0.147 0.853 5 S -0.006 6.006 6 C -0.292 4.292 7 C 0.296 3.704 8 O -0.432 6.432 9 N -0.362 5.362 10 C 0.095 3.905 11 C -0.189 4.189 12 C -0.166 4.166 13 N -0.061 5.061 14 C 0.002 3.998 15 C 0.039 3.961 16 N -0.355 5.355 17 C -0.366 4.366 18 H 0.109 0.891 19 C -0.250 4.250 20 N -0.596 5.596 21 Si 0.807 3.193 22 H -0.203 1.203 23 H -0.222 1.222 24 H -0.201 1.201 25 C 0.000 4.000 26 N -0.086 5.086 27 N -0.147 5.147 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.248 0.752 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.224 0.776 40 H 0.155 0.845 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.413 12.891 -10.457 21.341 hybrid contribution 0.850 -1.428 1.181 2.039 sum -12.562 11.463 -9.276 19.372 Atomic orbital electron populations 1.21824 0.92978 1.02855 1.03123 1.21318 0.98234 0.90353 1.03685 1.23626 0.93478 1.03232 1.00442 0.85264 1.86801 1.79836 1.08824 1.25103 1.23488 1.04180 0.94224 1.07269 1.20839 0.90955 0.75881 0.82729 1.90754 1.64423 1.49703 1.38338 1.45905 1.07279 1.73416 1.09555 1.19264 0.80608 1.03680 0.86950 1.21882 1.09811 0.89439 0.97729 1.23839 1.05097 1.02805 0.84814 1.47718 1.41851 1.06904 1.09578 1.24700 1.00296 0.85808 0.88983 1.22617 0.98268 0.83707 0.91511 1.45903 1.37298 1.15233 1.37088 1.19293 1.14642 0.91053 1.11644 0.89121 1.25595 0.98071 1.01763 0.99551 1.69905 1.22127 1.35506 1.32065 0.85150 0.77121 0.78944 0.78102 1.20270 1.22159 1.20129 1.23018 0.92810 0.84160 1.00031 1.78289 1.19624 0.90946 1.19765 1.75008 1.16030 1.27557 0.96111 0.91467 0.91263 0.91857 0.91744 0.88936 0.86905 0.91576 0.88815 0.75205 0.88615 0.90204 0.77594 0.84482 0.93460 0.91869 0.93787 0.90620 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.82 71.98 0.71 -1.03 16 2 C -0.10 -1.36 5.38 30.59 0.16 -1.20 16 3 C -0.08 -1.20 2.60 29.85 0.08 -1.12 16 4 H 0.13 1.47 8.14 -2.39 -0.02 1.46 16 5 S -0.23 -4.37 19.79 -56.49 -1.12 -5.49 16 6 C -0.12 -1.84 10.61 113.37 1.20 -0.64 16 7 C 0.51 10.64 6.66 87.66 0.58 11.23 16 8 O -0.55 -15.80 15.86 -3.02 -0.05 -15.85 16 9 N -0.71 -12.90 5.55 -466.78 -2.59 -15.49 16 10 C 0.22 4.61 6.23 85.63 0.53 5.15 16 11 C -0.05 -1.23 6.61 41.59 0.28 -0.95 16 12 C -0.01 -0.31 10.72 83.49 0.89 0.58 16 13 N -0.27 -7.94 3.54 -332.03 -1.18 -9.12 16 14 C 0.10 3.35 5.14 46.75 0.24 3.59 16 15 C 0.17 6.54 6.90 86.44 0.60 7.14 16 16 N -0.63 -27.85 3.70 -716.66 -2.65 -30.51 16 17 C -0.24 -11.94 10.70 84.03 0.90 -11.04 16 18 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 19 C -0.06 -2.88 5.50 84.86 0.47 -2.41 16 20 N -0.95 -51.76 11.39 21.65 0.25 -51.51 16 21 Si 0.98 41.90 29.55 68.60 2.03 43.93 16 22 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 23 H -0.30 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 25 C 0.13 4.27 8.74 86.49 0.76 5.02 16 26 N -0.11 -3.44 13.17 37.02 0.49 -2.95 16 27 N -0.28 -8.47 12.41 -48.61 -0.60 -9.08 16 28 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.83 7.01 -2.39 -0.02 0.81 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.20 7.77 -2.39 -0.02 1.18 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.41 6.16 8.46 -92.71 -0.78 5.37 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.21 4.57 6.74 -2.91 -0.02 4.55 16 40 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 41 H 0.05 1.80 6.31 -2.39 -0.02 1.79 16 42 H 0.06 2.88 7.16 -2.39 -0.02 2.86 16 43 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 44 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -64.55 389.19 2.19 -62.35 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.22 Total: 19.39 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 7.40 Total: 14.31 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -6.29 Total: -118.65 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.05 Total: -15.85 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -1.12 Total: -5.49 kcal Total: -64.55 2.19 -62.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107158886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.706 kcal (2) G-P(sol) polarization free energy of solvation -64.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds